Chy7G137490.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy7G137490.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH07: 13077551 .. 13079478 (+)
Sequence length	282
RNA-Seq Expression	Chy7G137490.1
Synteny	Chy7G137490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGCTCCAAGCAGGGGTGTTGGTGCGATAACATAGGCAAAAAAAGTGGCAGGACTCCTAGGGAGGTTGACGAACAACAAGTGGATGAAGGGGAGAAACAGGGCAGTCCAAGCTGTGTGGAGGTGTTTGAAGCCGCCATTGATGAACTTCACAGGTAGATAAATTTTGACGCACAAATGGGGGATGTAACGACGTGGGTAAGAGCTGCGCTGACGGATGAAGATACTTGCATCGAAGGATTTGAAGGTGAAAGGGGAAAAGTAGTGAATTTGCTAAAGAATCGGTGGTGAAAGTTGGTTGTATTACAAGTAATGCACTTGCTTTGGTTAATAAATTGGTTGCCTCTAGTTTTAAAATTGCACTAAATATGTAAGGAGATTTGGAATTTCTCTTGAACTTGATGTGGAGATTGGATTTACATTTTATAAGATTGTATAACTTGTAATTATACTAATTGAAAGAATTAAAATTACATACTATTTTTGAATTGGAAATTAGATTATGATATCTTTGTTTTTTTTTTTTTTTTTTGTGTGTTGAAATAAAATTATGATCATTAATTGGGCTAGCTCTTTCTTGTATATCTTCCATGGAATTTAGACTATAATGGTGATGTTGGATAGTTTCTTCTTTGTTGCATATGGAGATTGATTCTCTTTTCTTTGTTTAAGGAGATGTTCCACTGTTGTTTCATGTCCTTCATAAATTGTACAAATATGCCAAAGGTTTTATGTCTCTTTTTATGATGCTTTACCCTAGTGGATTTGGGATGATCTCGATCTTGAATGGATTTCAAATCATTTTTGTTTGTTTGGATGCTTAAAAAAAATTGGAAATTTGAATTTTAGTTTAAGATTTCAAATGTTGATTTTGAACCAAGCAAGATGGATGTAGGTTTTATTTGTTGTAACTAATGAGTACATGTTGTTTTGATTTTTTTTTGTTTATCTTTGCTTTTGAATTCTTTTTCTTAATTTTTCACTTAATAATAATAACGACTTTAGTTAAGTTTTTTTAAACTAAATAATATGTTTTTATTATTATACATACAATTTAATTTGATATTAAAATAACGGGTAACAATTAAAATAAGCTATTACAACATAAAAAGTAATGGAATGGAATATGTAAATGACGGAATGGAATATGCGAATGACTAGATGTTGACGGAATGGAATATGCGAAATACTTGCCGAAGACGTCTACATAGTGGTCGAATTTACAACGTCATAATTAAGAAAATTAAGGCCAAATGATTTTAAGAAAAGTAAGATTATTTAATAAAATAAATTTGTGAAATTTGTGTATTGAATCTACATTATATATATTAGAAAAAAATATATTATAACACTACTATCATAACCCTTCCTCCAACCACATTTTATCATAACACTGTCACAATACTACCCACATAACCCTTCCCCCAAACACATCTTATTATAACACTATTATAAACCTACCCACATAACCCTTCCCCCAAACACCTCTTACCATAAAACTAGTTTTATCATAACAGTAGTTTTATCATAACTCTAACCCTTCCATAACCCAAGCCTTCCCCCAAACGCCCTCTAAGAGTTTGAGGTATATCTTTGATTAGAAGGACCTGAACTTGAGATAAAAAAGATGACTAGAGCTGATCAAGATTATGATTGCACCATAGAATACCATCCAGGCAAGGTTAACGTAGTGGTAAATGTCTTAAGTAGGAAGTCGAGACTTTTAAAGAGTGTTAAGGAGTTCCAAGGCAGCTGTGACTGTAGAGAGTTCAGAAAGCTTGTTAACATAGTTTCAAGTTAGGCCTTCTCTGATGGATGAGTTTGTGAGAAGGCAATTAGAAGACAGTCAACTTAATAAAAGGCTTGGAGAGTCCAAGCAGGGCCAAAAGGCTGAGTTTCATTTAAGGTCAGATAGAGCCCATAGTTAA

mRNA sequence

ATGGGCTCCAAGCAGGGGTGTTGGTGCGATAACATAGGCAAAAAAAGTGGCAGGACTCCTAGGGAGGTTGACGAACAACAAGTGGATGAAGGGGAGAAACAGGGCAGTCCAAGCTGTGTGGAGGTGTTTGAAGCCGCCATTGATGAACTTCACAGGCCTTCTCTGATGGATGAGTTTGTGAGAAGGCAATTAGAAGACAGTCAACTTAATAAAAGGCTTGGAGAGTCCAAGCAGGGCCAAAAGGCTGAGTTTCATTTAAGGTCAGATAGAGCCCATAGTTAA

Coding sequence (CDS)

ATGGGCTCCAAGCAGGGGTGTTGGTGCGATAACATAGGCAAAAAAAGTGGCAGGACTCCTAGGGAGGTTGACGAACAACAAGTGGATGAAGGGGAGAAACAGGGCAGTCCAAGCTGTGTGGAGGTGTTTGAAGCCGCCATTGATGAACTTCACAGGCCTTCTCTGATGGATGAGTTTGTGAGAAGGCAATTAGAAGACAGTCAACTTAATAAAAGGCTTGGAGAGTCCAAGCAGGGCCAAAAGGCTGAGTTTCATTTAAGGTCAGATAGAGCCCATAGTTAA

Protein sequence

MGSKQGCWCDNIGKKSGRTPREVDEQQVDEGEKQGSPSCVEVFEAAIDELHRPSLMDEFVRRQLEDSQLNKRLGESKQGQKAEFHLRSDRAHS*

Homology

[Close]

BLAST of Chy7G137490.1 vs. ExPASy TrEMBL
Match: A0A0A0L3A2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377150 PE=4 SV=1)

HSP 1 Score: 69.7 bits (169), Expect = 7.3e-09
Identity = 37/47 (78.72%), Postives = 39/47 (82.98%), Query Frame = 0


Query: 15 KSGRTPR---EVDEQQVDEGEKQGSPSCVEVFEAAIDELHRPSLMDE 59
          +S  TPR   EVDEQQVDEGEKQGS SCVEVFEAAIDELH P+L DE
Sbjct: 7  QSNTTPRSFGEVDEQQVDEGEKQGSSSCVEVFEAAIDELHSPALSDE 53

The following BLAST results are available for this feature:

BLAST of Chy7G137490.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy7G137490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0L3A2	7.3e-09	78.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G377150 PE=4 SV=1	[more]

BLAST of Chy7G137490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

BLAST of Chy7G137490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..36
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 15..31
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 70..93

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy7G137490	Chy7G137490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy7G137490.1.exon1	Chy7G137490.1.exon1	exon
Chy7G137490.1.exon2	Chy7G137490.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy7G137490.1.cds1	Chy7G137490.1.cds1	CDS
Chy7G137490.1.cds2	Chy7G137490.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy7G137490.1	Chy7G137490.1-protein	polypeptide