Chy6G121830.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G121830.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 19191391 .. 19192205 (+)
Sequence length	375
RNA-Seq Expression	Chy6G121830.1
Synteny	Chy6G121830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTGGAAGAGATATGATAACCTCTCGTCGAGCCTTTCGCCTCTCAGATCTAGGGGGCCTACCCTACCTAGCGGCTTCCTTCTAACCAAGTATTCGGTATTTCGCTATTGAATTAGACTGATAATTCTCTCTTTCCAAGTTCGCAGCATAAGAAGGAATTCTCAGTTGCCTTTGAGTCCGCGAGACCCCTCCAAAATCATGAAATAGTGGTCCGGAGGCGCAATTCAATATGCAAGGCGCCATAAGACAGGTCCGAAGGACAGACGGGTTAATATGGATAGGACTGAGGACGGGGAAGGAAGTATCTTTATGAATAAGGGTTAGCATGAGAAGGAGAAAGAATAGGTTCAAAGAAAGCTGCTACACCGGCTCGAGTTTCATTCATCTTCTTGAGTTGGGTCCCCTAAACCAGGAACCCTTGCTCTAGCTAGATCTCTTTCATTCTCTCTTTCCGAAGCAAGAGCAGTTCTTGGAGTTCCGGAGAGAGCTGCTTTACCTAGGGGATCAGCAGAAGTCTCAGTTTTGGCAGCCTCAGTTGGGTCTGAGTTAGTGGCTTAGCTCTTCTTCCATCTCCATCAGTACTTTTTTTTCATGTGAGTAGGACTAGCCGGGAATGATAATCAGGATCACTTTCAAAGGAAGAAGGCAGATCTGCGGGATCGGAGGTTAGAGGTTCAAAGAATATTGACGAGACTGAGTTTACGAAGGAGAGGGAAGAGATGACGGCGACAAGGAAGACAAACTCGTCCTTTAATCAAGAGGCGAAAGTGGCTGAGGCTGACGTTCTGAGATCGGATCTTAGAGAAAGCACTCGG

mRNA sequence

ATGTGGAAGAGATATGATAACCTCTCGTCGAGCCTTTCGCCTCTCAGATCTAGGGGGCCTACCCTACCTAGCGGCTTCCTTCTAACCAAGTATTCGCAAGAGCAGTTCTTGGAGTTCCGGAGAGAGCTGCTTTACCTAGGGGATCAGCAGAAGTCTCAGTTTTGGCAGCCTCAGTTGGGTCTGAGATCACTTTCAAAGGAAGAAGGCAGATCTGCGGGATCGGAGGTTAGAGGTTCAAAGAATATTGACGAGACTGAGTTTACGAAGGAGAGGGAAGAGATGACGGCGACAAGGAAGACAAACTCGTCCTTTAATCAAGAGGCGAAAGTGGCTGAGGCTGACGTTCTGAGATCGGATCTTAGAGAAAGCACTCGG

Coding sequence (CDS)

ATGTGGAAGAGATATGATAACCTCTCGTCGAGCCTTTCGCCTCTCAGATCTAGGGGGCCTACCCTACCTAGCGGCTTCCTTCTAACCAAGTATTCGCAAGAGCAGTTCTTGGAGTTCCGGAGAGAGCTGCTTTACCTAGGGGATCAGCAGAAGTCTCAGTTTTGGCAGCCTCAGTTGGGTCTGAGATCACTTTCAAAGGAAGAAGGCAGATCTGCGGGATCGGAGGTTAGAGGTTCAAAGAATATTGACGAGACTGAGTTTACGAAGGAGAGGGAAGAGATGACGGCGACAAGGAAGACAAACTCGTCCTTTAATCAAGAGGCGAAAGTGGCTGAGGCTGACGTTCTGAGATCGGATCTTAGAGAAAGCACTCGG

Protein sequence

MWKRYDNLSSSLSPLRSRGPTLPSGFLLTKYSQEQFLEFRRELLYLGDQQKSQFWQPQLGLRSLSKEEGRSAGSEVRGSKNIDETEFTKEREEMTATRKTNSSFNQEAKVAEADVLRSDLRESTR

Homology

The following BLAST results are available for this feature:

BLAST of Chy6G121830.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G121830.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G121830.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G121830.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 65..110
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..97
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..18

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G121830	Chy6G121830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G121830.1.exon1	Chy6G121830.1.exon1	exon
Chy6G121830.1.exon2	Chy6G121830.1.exon2	exon
Chy6G121830.1.exon3	Chy6G121830.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G121830.1.cds1	Chy6G121830.1.cds1	CDS
Chy6G121830.1.cds2	Chy6G121830.1.cds2	CDS
Chy6G121830.1.cds3	Chy6G121830.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G121830.1	Chy6G121830.1-protein	polypeptide