Chy6G120510.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G120510.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH06: 16847560 .. 16850317 (+)
Sequence length	339
RNA-Seq Expression	Chy6G120510.1
Synteny	Chy6G120510.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

CTAAGACGAAGGAGGTCTGAGATCTGGGGAAGATCAGAGATGTTGAAGATTGGAGATGTCGAAGTTGGAGGAGATGTCGAAGGAGACGAAGGAGATCTAAGATTGAAGGAGATGGAGGAACTGAGATCTGAGATCAGCCTAACGAAGGAGATAAAGGAGGAGAGACAAAGTTGAGACGGAGGAGACGTCGAAGATGTTGAGTGTGACGACCCAGACTTTTCAGACCTTGTCTAAGTCGTTACTTTTACTCAAAACCGTTTGTTGACAAAAGACATAGCAAAATTCAGTTGAAACCGTAAGAAAACGAAGGAAAATTTTAATCGGGCCCTATTTCCAAAATACAAAATTTCAAATGTTGTTTACCAAAAATTTTAACTATTTGTAAACTTAGTTCAATCAAAATATTTTTAAACCGTCAGCGGAAGCAGTTAGAAGACAGTCCCCTATGGCAAATCACGATTCTTTCTTGTCCCTCATCGGTCTGCCCCTCGTATTACCTTTGCTTGAAAATTAAACATAAAAAGGGTGAGTATTAATATACCCAGTAAGAGACCCACTACTGGTCCCGTTAGGGGAAAAATAAATTATTAATTTCCTATGGGGTACCCTGCACAATCACAGTCTTGTGATCCCGTAGAATACACATATCAGTCTAGTGCTCCCGAAGGATGCACAAAAGGGTGATAATCCCGTAGGACACCCGCAAGGTAACTACCCCCTAGGAAACCAATAATTTACCCCTCAGTCCCTTCTATACCCTTAACAGTAATTTATAATCCAGTTAAACGTCCTTGTCACGTAAACTCTTCACTTAACCTCGAACAACCATTTCATCCAATTTAACCTAAGGTCAGTCAAGAAACACGTCGATACATCAGTCAACAACTAAAATAATCCTAACATTCATCTCAGTCTACAATGGCACTACCATGATGTCTCTTCCGTTCACAATAACACTACCATAGTTGTATATCATACATTCGGTTTACACAACCATCTACCAGTTCAAGCCACACCTTATATGAGCCACATCTACAAGGATCAGTCATTCCCACATCCTTACAATTGTACATATACATAACCAGACAGTCATAACATACATTCAACCACAAGTCTACATTCAAACATACACATCATGGTCGTTATCCCTACTCAGTATAACAGTACGATCTATGCAGCCAATACATCCAAATATTTTTTATTGAGTCCAGTAGAAAGCCCCTTACCTCACTTTTATGCAAGTTCTTCAATCGAGCAATTTCAAATGAATAAATTCCTAAACATAATCAAACGTAAAATTAACATCCTTCTAAATAGTTTCATCCATTCAATTCACCCATACGTAAACTCCACAACTTACCCAAGAAGTGGAGAGACGACTCCAACGAAGCTTATGGCAAAACTCAAAGTCCCAATTATTCAAATCTCCTATATCGCCTTCAAGAACAAACATCCAAACACCCAATTAAACAACATCAACTAATCGAGATTTCAATGAAGACTCTTAAATCCATCAATTTCTTTCTTACCCAACAAATTTACAACGACATAGAGGCAACGACACACAAGACTAGGGCAAGCGACATTGTGCAAATCGATTTGGGCATGGGTCGGCTTCCAATCCACGCTGCTGGGCTTCACGGATCGAGATGCAGCGCGGCTCGGACGGATTGCTGCGCGCGGCTGGCTGGGCTTCGTCGGAATGCTGGGACGGAGGCATGCGGCGGCGGACAGAGACGTAGGGTAGGACAGATCTGAGGAGGGGGGGATTTCGGTTGGTTCCGGCTGGCAGACGAGGCATCGCGGCGGCGGCGCGGACGTGGGACAGACGCGGTCGGAGCGCCGTTTAGGCGGTCGGCGTGAGGTTGAGCGGGGGAGAAGAGAGGAAGGGGTGGCCGGCGGCTAGGGCAAAGAGAAGGAGAAGAAGAAAGAAAATAAAAAGAAAAATGAAGGGGGGGGCTGGGCACACGGGGAAGAAAGGGAAGAGAGGGAGAGAAAATTTCATTTTTTTTTTGGTTTTATTAATAATAATAATAATAATAATAATAATAATAAATATATATTATGATAATTATTATATCATAATTATTAATACATTTCCATTTCTTTTTCTTTTTAAATCCTTTTCTTTTTCATCAATTCATTTTCTTTTCCTCACCAAACTTCAACATACAATACATTCAAAAAAATAGTTTTAAATTTATTTTTTTTTCAATTTAAAATAAGATAATTACACTTTAGAATTACATCAAAATTTTGGGGCGTTACATTGAGGCGCACGAGGGAGAGTCAGAGGTGAAGTGTCGTGTGACGACTTGAGAACTAAGAAGATGAGGTGAAGTGTCACGTGACGTCGTGAGAACTAAGAAGATGGTTTCACGTGGGCCGTGAGAAGTGAAATGGAAAACTGAGAAAACCTAATTAGTAAATTTTCTTTTCTTATTAAATAAATGATATATAAAAATATAAATATATTATATTAATTTGGGTTGGGTTGGGTTGGGTTGAACTGAATTTTTCAACCCCAACCTGAGACCCAACCCAACCCAACTCAAAAAAATCCTATTTTTTTAACCCATCCCAATCCACATTTTAACCTAACCCAACCCTTATAATATAGGTTGGGTAGTATAGATTATTCGGGTTCAACCCATATTCTTACACCCCTAACACGTACAATAATGACAACGATTGCAATAATCACAAAGACTACAATGATAACTATGTCGCATCAATTGACTTGGGTAATGACAACCAT

mRNA sequence

CTAAGACGAAGGAGGTCTGAGATCTGGGGAAGATCAGAGATGTTGAAGATTGGAGATGTCGAAGTTGGAGGAGATGTCGAAGGAGACGAAGGAGATCTAAGATTGAAGGAGATGGAGGAACTGAGATCTGAGATCAGCCTAACGAAGGAGATAAAGGAGGAGAGACAAAGTTGAGACGGAGGAGACGTCGAAGATGTTGAGTGCGCACGAGGGAGAGTCAGAGGTGAAGTGTCGTGTGACGACTTGAGAACTAAGAAGAATAATGACAACGATTGCAATAATCACAAAGACTACAATGATAACTATGTCGCATCAATTGACTTGGGTAATGACAACCAT

Coding sequence (CDS)

CTAAGACGAAGGAGGTCTGAGATCTGGGGAAGATCAGAGATGTTGAAGATTGGAGATGTCGAAGTTGGAGGAGATGTCGAAGGAGACGAAGGAGATCTAAGATTGAAGGAGATGGAGGAACTGAGATCTGAGATCAGCCTAACGAAGGAGATAAAGGAGGAGAGACAAAGTTGAGACGGAGGAGACGTCGAAGATGTTGAGTGCGCACGAGGGAGAGTCAGAGGTGAAGTGTCGTGTGACGACTTGAGAACTAAGAAGAATAATGACAACGATTGCAATAATCACAAAGACTACAATGATAACTATGTCGCATCAATTGACTTGGGTAATGACAACCAT

Protein sequence

LRRRRSEIWGRSEMLKIGDVEVGGDVEGDEGDLRLKEMEELRSEISLTKEIKEERQS*DGGDVEDVECARGRVRGEVSCDDLRTKKNNDNDCNNHKDYNDNYVASIDLGNDNH

Homology

The following BLAST results are available for this feature:

BLAST of Chy6G120510.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G120510.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G120510.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G120510.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 35..55

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G120510	Chy6G120510	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G120510.1.exon1	Chy6G120510.1.exon1	exon
Chy6G120510.1.exon2	Chy6G120510.1.exon2	exon
Chy6G120510.1.exon3	Chy6G120510.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G120510.1.cds1	Chy6G120510.1.cds1	CDS
Chy6G120510.1.cds2	Chy6G120510.1.cds2	CDS
Chy6G120510.1.cds3	Chy6G120510.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G120510.1	Chy6G120510.1-protein	polypeptide