Chy6G120490.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G120490.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	30S ribosomal protein S21, chloroplastic-like
Location	chrH06: 16703257 .. 16704922 (-)
Sequence length	552
RNA-Seq Expression	Chy6G120490.1
Synteny	Chy6G120490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCGTCGAATCACGCCGCCGCTAAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGTCTCTTTCTACAATTTCTCTTTGGGACTTATCTTCTTACTTCTCAAACTCTGTTACACCTTTTTTTGTTGAGATTTTGATTGATTATGATTCTTCTCCCCTTCAAGCTGTTTTGGATTCGTGTCTGTTTGAATTTGATTGCTTGGAAGAAATAGATACCTTGTCAACAGCTGGCTTCGGAATTTTAAGATTTCCTAGAGATTTGCAGGGTCTTATCTTTTTACTCTTCCGATCAACTTAGGTTATGGGCAATAGAGAGTGAAAAAACAGTATCTAAGTGGACTAGAGAGAACCTCTCTGTGTGTTACGAATAATGCCATGAGTGTATGAGCGCACTTACTCTAGGTGGACTAATCTCATTGGACAATCTACGGTATCTTGTAATGTTTTAGAATGTCAAGGAAACTGGTAGGTCACTGAATCATTGATATTAACACTTGTTAGATGCATGAGAAAGAAGTATCTCAAATTAATGTAGTGGTTATTTGGGAGATGTAGTTTGAGTTTGCATCCAACAGTAATAGTTATTTATTGTGAGGTAGCTGAGTTGTGGTAGTCCCATTGAATAATTTGTTTGAAACTAAACCAGACTCTCGAAACCGTGTATATTTTTTCAATCCAAACATATCATTGTAGAGAAAGGTACATATTCCCATCTCAAAGGTTACAAAGGTCTATAGTCAATACATGCACAAAAGTCCATTTTTTCCATTGTTTTTCTACTTATTACAGTGGAACTTGTAGAATTTACAGAAGACTTAAAACAGGATAACTGTGTTTAAGAAGATTATAAATTTGTCTCGTGTAATTTTATTTCCTTGGGCCCTTCTTTTTTTTTTTTTTTTTTCGTTTTAGTTATTATATGTAACACTTCAGATCATGCAGAACCTTCAAATTCCTAACATCTTTATCATAAAACCAAATACCACTATGAAGCTTCTACTCAAGTTGGAAGATTGTTGGAGAGTGTCTTATTAGAGATTTTTATTGCCCAATTAAGTGAATTATTGAGGCCCCAGTTAGCTAATTACAATGTTTTGTCGAAGGAAAATGGATGAGATTTATGTGATAAGTTTGTATCATGCAACTAAGTTACGATTTGGTTGATGAACAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAATTAA

mRNA sequence

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCGTCGAATCACGCCGCCGCTAAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAATTAA

Coding sequence (CDS)

ATGGCTTCTCTCTCCAGCTTCTTCTCCTTCCTCTTACCCTCTAAACCACCGCCCCCAAAACCCCACCAGCCCTTCATTGCCTCCTCCCCTTCTCCGTCGAATCACGCCGCCGCTAAGTTTCAAACACTGAAATCCAGGGATGGATCGGTTGCCCTAAAGCCTCAACAGGGTCCCAACCATTCGGAGCCCTTATCCGCGGAATTGGCCTCCGTTATTTGTCCCTCCCTCGCCTTCGCCAACACAATGTTCTTCAGATCCGCATATAATGTTCAGGTGGTTGTGGATGATAATGAACCCGAGGAGCGCCTTCTGAACAGATTCCGGCGAGAGGTTATGCGGGCCGGCGTGATTCAGGAGTGTAAGAGACGGAGATTCTTTGAGAATACTCAAGATGTTAGGAAGCGCAAGACTCGCGAGGCTGCTAAACGCAACCGCCGCAGGCGGCCACAGGCAAGATTTACACCACAGAACAAGCAGGATGTGCCTGCAACCAAGCAAGAAGCTGATGATGACAACTGGGATTTACCTGAAGATGAGGACATTCCTAATTAA

Protein sequence

MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNHSEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDEDIPN*

Homology

[Close]

BLAST of Chy6G120490.1 vs. ExPASy Swiss-Prot
Match: P82024 (30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 PE=1 SV=2)

HSP 1 Score: 150.2 bits (378), Expect = 2.3e-35
Identity = 95/183 (51.91%), Postives = 117/183 (63.93%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPN- 60
           MAS SS  +FL P  P           S P  SN       +L S+  S+++  ++  N 
Sbjct: 1   MASTSSLLNFLSPLFPSN--------TSLPPSSNPKFPNPNSLSSQQNSISISSKKHENA 60

Query: 61  ---HSEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGV 120
                E    +L +V+CPSLAF+NT++FRSAYNVQV+VDDNE EERLLNRFRREVMRAGV
Sbjct: 61  AIAKKEEYPGDLMAVVCPSLAFSNTLYFRSAYNVQVLVDDNENEERLLNRFRREVMRAGV 120

Query: 121 IQECKRRRFFENTQDVRKRKTREAAKRNRRRR--PQARFTPQNKQDVPATKQEADDDNWD 178
           IQECKRRR+FEN Q+ +KRK REAAKRN RRR  P     P  ++     K+E D DNWD
Sbjct: 121 IQECKRRRYFENKQEEKKRKHREAAKRNSRRRRGPFRGPFPGKEEATKVDKKEDDGDNWD 175

[Close]

BLAST of Chy6G120490.1 vs. ExPASy Swiss-Prot
Match: P48949 (30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=rpsU PE=3 SV=1)

HSP 1 Score: 47.4 bits (111), Expect = 2.1e-04
Identity = 28/58 (48.28%), Postives = 38/58 (65.52%), Query Frame = 0


Query: 91  QVVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRRR 149
           QVVV  NEP E  L RF+R+V +AG+  + K+ +FFE  Q+  KRK  EA +R +R R
Sbjct: 3   QVVVGQNEPIESALRRFKRQVAKAGIYTDFKKHQFFETPQEKHKRK--EATRRRQRSR 58

[Close]

BLAST of Chy6G120490.1 vs. ExPASy Swiss-Prot
Match: B8GPU0 (30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX=396588 GN=rpsU PE=3 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 4.6e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 92  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 148
           V V +NEP E  L RF+R   +AGV+ E +RR F+E   ++RKRK   A KR  +R
Sbjct: 4   VRVKENEPFEVALRRFKRTCEKAGVLTEVRRREFYEKPTEIRKRKAAAAVKRQAKR 59

[Close]

BLAST of Chy6G120490.1 vs. ExPASy Swiss-Prot
Match: A1WW12 (30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=349124 GN=rpsU PE=3 SV=1)

HSP 1 Score: 45.4 bits (106), Expect = 7.9e-04
Identity = 26/56 (46.43%), Postives = 35/56 (62.50%), Query Frame = 0


Query: 92  VVVDDNEPEERLLNRFRREVMRAGVIQECKRRRFFENTQDVRKRKTREAAKRNRRR 148
           V V +NEP E  L RF+R   +AGV+ E +RR ++E    VRKRK   A KR+ +R
Sbjct: 4   VKVRENEPFEVALRRFKRSCEKAGVLSEIRRREYYEKPTQVRKRKQAAAVKRHMKR 59

[Close]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL
Match: Q8VWX5 (Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAA +FQTLKSRDGSVAL PQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPN 184
           IP+
Sbjct: 188 IPS 190

[Close]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL
Match: A0A0A0LDL7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1)

HSP 1 Score: 344.0 bits (881), Expect = 3.9e-91
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAA +FQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPN 184
           IP+
Sbjct: 181 IPS 183

[Close]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL
Match: A0A5D3C287 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold108G001120 PE=3 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 8.8e-91
Identity = 177/182 (97.25%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAAA+FQTLKSRDGSVALKPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 182

[Close]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL
Match: A0A1S3BNG4 (uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=3 SV=1)

HSP 1 Score: 340.5 bits (872), Expect = 4.4e-90
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAAA+FQTLKSRDGSVALKPQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 183
           IP
Sbjct: 229 IP 230

[Close]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL
Match: A0A6J1J5C2 (30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC111481494 PE=3 SV=1)

HSP 1 Score: 303.9 bits (777), Expect = 4.5e-79
Identity = 162/182 (89.01%), Postives = 170/182 (93.41%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKP QP IA SPSP+N AAA+FQTLKSRDGSVAL PQQ P H
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPLQPLIA-SPSPANQAAAQFQTLKSRDGSVALSPQQAPKH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRR+FFEN  D++KRK+REAAKRNRRRRPQ RFTPQ+KQDVPATKQEADDDNWDLPE E 
Sbjct: 121 KRRKFFENPHDIKKRKSREAAKRNRRRRPQQRFTPQDKQDVPATKQEADDDNWDLPE-EG 180

Query: 181 IP 183
           IP
Sbjct: 181 IP 180

[Close]

BLAST of Chy6G120490.1 vs. NCBI nr
Match: XP_004145671.1 (30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypothetical protein Csa_017561 [Cucumis sativus])

HSP 1 Score: 343 bits (880), Expect = 1.36e-118
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAA +FQTLKSRDGSVAL PQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180

Query: 181 IPN 183
           IP+
Sbjct: 181 IPS 183

[Close]

BLAST of Chy6G120490.1 vs. NCBI nr
Match: AAL35983.1 (ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Protein S21 [Spinacia oleracea])

HSP 1 Score: 343 bits (880), Expect = 1.74e-118
Identity = 178/183 (97.27%), Postives = 181/183 (98.91%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAA +FQTLKSRDGSVAL PQQGPNH
Sbjct: 8   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAPQFQTLKSRDGSVALNPQQGPNH 67

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLA+ANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 68  SEPLSAELASVICPSLAYANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 127

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED
Sbjct: 128 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 187

Query: 181 IPN 183
           IP+
Sbjct: 188 IPS 190

[Close]

BLAST of Chy6G120490.1 vs. NCBI nr
Match: KAA0042889.1 (hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK05292.1 hypothetical protein E5676_scaffold108G001120 [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (876), Expect = 5.54e-118
Identity = 177/182 (97.25%), Postives = 180/182 (98.90%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAAA+FQTLKSRDGSVALKPQQGPNH
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 60

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 120

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ED
Sbjct: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEED 180

Query: 181 IP 182
           IP
Sbjct: 181 IP 182

[Close]

BLAST of Chy6G120490.1 vs. NCBI nr
Match: XP_008450090.2 (PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo])

HSP 1 Score: 339 bits (870), Expect = 2.45e-116
Identity = 176/182 (96.70%), Postives = 179/182 (98.35%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           MASLSSFFSFLLPSKPPPPKPHQP IASSPSP NHAAA+FQTLKSRDGSVALKPQQGPNH
Sbjct: 49  MASLSSFFSFLLPSKPPPPKPHQPLIASSPSPPNHAAAQFQTLKSRDGSVALKPQQGPNH 108

Query: 61  SEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQEC 120
           SEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQEC
Sbjct: 109 SEPLSAELASVICPSLAFANTMFFRSAYNVQVIVDDNEPEERLLNRFRREVMRAGVIQEC 168

Query: 121 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEDED 180
           KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+ D
Sbjct: 169 KRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEEAD 228

Query: 181 IP 182
           IP
Sbjct: 229 IP 230

[Close]

BLAST of Chy6G120490.1 vs. NCBI nr
Match: XP_038900112.1 (30S ribosomal protein S21, chloroplastic [Benincasa hispida])

HSP 1 Score: 328 bits (840), Expect = 1.83e-112
Identity = 172/184 (93.48%), Postives = 179/184 (97.28%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAA--KFQTLKSRDGSVALKPQQGP 60
           MASLSSFFSFLLPSKPPPPKPHQP I SSPSP+NHAAA  + QTLKS+DGSV+LKPQQGP
Sbjct: 1   MASLSSFFSFLLPSKPPPPKPHQPLIVSSPSPANHAAAAAQCQTLKSKDGSVSLKPQQGP 60

Query: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQ 120
           NHSEPLSAELASVICPSLAFANTMFFRSAYNVQV+VDDNEPEERLLNRFRREVMRAGVIQ
Sbjct: 61  NHSEPLSAELASVICPSLAFANTMFFRSAYNVQVLVDDNEPEERLLNRFRREVMRAGVIQ 120

Query: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPED 180
           ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPE+
Sbjct: 121 ECKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPATKQEADDDNWDLPEE 180

Query: 181 EDIP 182
           E+IP
Sbjct: 181 ENIP 184

[Close]

BLAST of Chy6G120490.1 vs. TAIR 10
Match: AT3G27160.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 158.7 bits (400), Expect = 4.5e-39
Identity = 95/185 (51.35%), Postives = 131/185 (70.81%), Query Frame = 0


Query: 3   SLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNHSE 62
           SL+SF SF+ P K    KP  P   + PSP+       Q  ++     ++  ++  + + 
Sbjct: 6   SLTSFISFISPFK-SQTKPTPPPNLTLPSPTIS-----QRRRNDLAIESMAVEETSSTAS 65

Query: 63  PLSAELASVICPSLAFANTMFFRSAYNVQVVVDDNEPEERLLNRFRREVMRAGVIQECKR 122
            LS+ELASVICPSLA++NT+FF S YNVQV V+DNE EERL+NRFRREVMR GVIQECKR
Sbjct: 66  SLSSELASVICPSLAYSNTLFFSSGYNVQVFVEDNESEERLVNRFRREVMRTGVIQECKR 125

Query: 123 RRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDVPAT----KQEADDDNWDLPED 182
           RR+FEN QD +KR+TR+AAKRN++RRPQARFT + +++  A     K++ ++DNW++P  
Sbjct: 126 RRYFENKQDEKKRRTRDAAKRNKKRRPQARFTQETREEAAAATKSKKKDEEEDNWEMP-G 183

Query: 183 EDIPN 184
            D+P+
Sbjct: 186 GDVPS 183

[Close]

BLAST of Chy6G120490.1 vs. TAIR 10
Match: AT5G63300.1 (Ribosomal protein S21 family protein )

HSP 1 Score: 99.0 bits (245), Expect = 4.3e-21
Identity = 75/189 (39.68%), Postives = 111/189 (58.73%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           + SLS   S LL SKPP P   +P       PS+ +A   Q L      +  +      H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITL----PSSVSARTSQHLSMTTKILTAE------H 65

Query: 61  SEPLSAELASVICPSLAFANTMFFRSA-YNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+VV  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRRRPQARFTPQNKQDV-----PATKQEADDDNWD 180
            +RRRFFE++ + + RKT+EAAK+ R+RRP  +  P +  ++      A++++  DD+W+
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKRRPNPKPKPLSTSEIRKHNRNASREDEQDDHWE 180

Query: 181 L-PEDEDIP 183
           L PED +IP
Sbjct: 186 LPPEDIEIP 180

[Close]

BLAST of Chy6G120490.1 vs. TAIR 10
Match: AT5G63300.2 (Ribosomal protein S21 family protein )

HSP 1 Score: 84.3 bits (207), Expect = 1.1e-16
Identity = 62/148 (41.89%), Postives = 87/148 (58.78%), Query Frame = 0


Query: 1   MASLSSFFSFLLPSKPPPPKPHQPFIASSPSPSNHAAAKFQTLKSRDGSVALKPQQGPNH 60
           + SLS   S LL SKPP P   +P       PS+ +A   Q L      +  +      H
Sbjct: 6   IVSLSELLSSLLSSKPPSPSSLKPITL----PSSVSARTSQHLSMTTKILTAE------H 65

Query: 61  SEPLSAELASVICPSLAFANTMFFRSA-YNVQVVVDDNEPEERLLNRFRREVMRAGVIQE 120
            + ++     V  PSLA AN +FF+S+ YNV+VV  D E EE+L+N F+R   RAGV+QE
Sbjct: 66  DDVIN----RVAYPSLANANLVFFKSSYYNVEVVPKDGESEEQLVNDFKRSCFRAGVLQE 125

Query: 121 CKRRRFFENTQDVRKRKTREAAKRNRRR 148
            +RRRFFE++ + + RKT+EAAK+ R+R
Sbjct: 126 SRRRRFFESSLEKKTRKTKEAAKKYRKR 139

The following BLAST results are available for this feature:

BLAST of Chy6G120490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P82024	2.3e-35	51.91	30S ribosomal protein S21, chloroplastic OS=Spinacia oleracea OX=3562 GN=rps21 P...	[more]
P48949	2.1e-04	48.28	30S ribosomal protein S21 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=111...	[more]
B8GPU0	4.6e-04	46.43	30S ribosomal protein S21 OS=Thioalkalivibrio sulfidiphilus (strain HL-EbGR7) OX...	[more]
A1WW12	7.9e-04	46.43	30S ribosomal protein S21 OS=Halorhodospira halophila (strain DSM 244 / SL1) OX=...	[more]

BLAST of Chy6G120490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
Q8VWX5	3.9e-91	97.27	Ribosome-like protein (Fragment) OS=Cucumis sativus OX=3659 GN=rpo1 PE=2 SV=1	[more]
A0A0A0LDL7	3.9e-91	97.27	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G588450 PE=3 SV=1	[more]
A0A5D3C287	8.8e-91	97.25	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BNG4	4.4e-90	96.70	uncharacterized protein LOC103491780 OS=Cucumis melo OX=3656 GN=LOC103491780 PE=...	[more]
A0A6J1J5C2	4.5e-79	89.01	30S ribosomal protein S21, chloroplastic-like OS=Cucurbita maxima OX=3661 GN=LOC...	[more]

BLAST of Chy6G120490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145671.1	1.36e-118	97.27	30S ribosomal protein S21, chloroplastic [Cucumis sativus] >KGN58186.1 hypotheti...	[more]
AAL35983.1	1.74e-118	97.27	ribosome-like protein, partial [Cucumis sativus] >4V61_AU Chain AU, Ribosomal Pr...	[more]
KAA0042889.1	5.54e-118	97.25	hypothetical protein E6C27_scaffold44G004060 [Cucumis melo var. makuwa] >TYK0529...	[more]
XP_008450090.2	2.45e-116	96.70	PREDICTED: uncharacterized protein LOC103491780, partial [Cucumis melo]	[more]
XP_038900112.1	1.83e-112	93.48	30S ribosomal protein S21, chloroplastic [Benincasa hispida]	[more]

BLAST of Chy6G120490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G27160.1	4.5e-39	51.35	Ribosomal protein S21 family protein	[more]
AT5G63300.1	4.3e-21	39.68	Ribosomal protein S21 family protein	[more]
AT5G63300.2	1.1e-16	41.89	Ribosomal protein S21 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001911	Ribosomal protein S21	PRINTS	PR00976	RIBOSOMALS21	coord: 93..101 score: 43.52 coord: 101..110 score: 43.33 coord: 125..135 score: 37.88 coord: 113..123 score: 38.64
IPR001911	Ribosomal protein S21	PFAM	PF01165	Ribosomal_S21	coord: 91..145 e-value: 1.7E-19 score: 69.3
IPR001911	Ribosomal protein S21	TIGRFAM	TIGR00030	TIGR00030	coord: 90..147 e-value: 4.2E-13 score: 46.9
IPR001911	Ribosomal protein S21	PANTHER	PTHR21109	MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S21	coord: 2..179
IPR001911	Ribosomal protein S21	HAMAP	MF_00358	Ribosomal_S21	coord: 89..145 score: 14.068398
IPR038380	Ribosomal protein S21 superfamily	GENE3D	1.20.5.1150	Ribosomal protein S8	coord: 104..142 e-value: 2.3E-12 score: 48.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 14..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 138..152
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 130..183
None	No IPR available	PANTHER	PTHR21109:SF17	PROTEIN S21 FAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..179

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G120490	Chy6G120490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G120490.1.exon2	Chy6G120490.1.exon2	exon
Chy6G120490.1.exon1	Chy6G120490.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G120490.1.cds2	Chy6G120490.1.cds2	CDS
Chy6G120490.1.cds1	Chy6G120490.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G120490.1	Chy6G120490.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
molecular_function	GO:0003735	structural constituent of ribosome