Chy6G120410.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy6G120410.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
DescriptionUnknown protein
LocationchrH06: 16574327 .. 16574530 (-)
Sequence length204
RNA-Seq ExpressionChy6G120410.1
SyntenyChy6G120410.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGGGTTTCTGAACTCAACCGGGATGCTTCTAATAGGTGTGAAAGAGAAAGGAGTGATCGAAGCTCTAGAGAGACTTCAGTCTCACCCATCGACACTGTGTTAGAGGTCAACTTGGAAGATTTATCGAGTTTTTCGAAATGGAAAATGGGTTATAGGTACTTCCCTGAGCTCATGGCATTGGAGCGAGTAGCAAACTTGTAA

mRNA sequence

ATGAGGGTTTCTGAACTCAACCGGGATGCTTCTAATAGGTGTGAAAGAGAAAGGAGTGATCGAAGCTCTAGAGAGACTTCAGTCTCACCCATCGACACTGTGTTAGAGGTCAACTTGGAAGATTTATCGAGTTTTTCGAAATGGAAAATGGGTTATAGGTACTTCCCTGAGCTCATGGCATTGGAGCGAGTAGCAAACTTGTAA

Coding sequence (CDS)

ATGAGGGTTTCTGAACTCAACCGGGATGCTTCTAATAGGTGTGAAAGAGAAAGGAGTGATCGAAGCTCTAGAGAGACTTCAGTCTCACCCATCGACACTGTGTTAGAGGTCAACTTGGAAGATTTATCGAGTTTTTCGAAATGGAAAATGGGTTATAGGTACTTCCCTGAGCTCATGGCATTGGAGCGAGTAGCAAACTTGTAA

Protein sequence

MRVSELNRDASNRCERERSDRSSRETSVSPIDTVLEVNLEDLSSFSKWKMGYRYFPELMALERVANL*
Homology
[Close]
BLAST of Chy6G120410.1 vs. NCBI nr
Match: KAE8650781.1 (hypothetical protein Csa_017536 [Cucumis sativus])

HSP 1 Score: 115 bits (287), Expect = 7.56e-32
Identity = 59/67 (88.06%), Postives = 62/67 (92.54%), Query Frame = 0 

Query: 1  MRVSELNRDASNRCERERSDRSSRETSVSPIDTVLEVNLEDLSSFSKWKMGYRYFPELMA 60
          M+VSELNRDASNRCER RSDRSSRE SVSP+D VLEVNLEDLSSFSKWKMG RYFP+LMA
Sbjct: 1  MKVSELNRDASNRCERGRSDRSSREISVSPLDNVLEVNLEDLSSFSKWKMGCRYFPDLMA 60

Query: 61 LERVANL 67
          LE VANL
Sbjct: 61 LELVANL 67

The following BLAST results are available for this feature:
BLAST of Chy6G120410.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G120410.1 vs.
Match NameE-valueIdentityDescription
BLAST of Chy6G120410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
KAE8650781.17.56e-3288.06hypothetical protein Csa_017536 [Cucumis sativus][more]
BLAST of Chy6G120410.1 vs. NCBI nr
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy6G120410Chy6G120410gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G120410.1.exon1Chy6G120410.1.exon1exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy6G120410.1.cds1Chy6G120410.1.cds1CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy6G120410.1Chy6G120410.1-proteinpolypeptide