Chy6G118470.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy6G118470.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrotransposon protein
Location	chrH06: 12456595 .. 12457150 (+)
Sequence length	477
RNA-Seq Expression	Chy6G118470.1
Synteny	Chy6G118470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGAGAAGTTTCCTGGCACTAATATCCAAGGATCAGCGACTATAGATTGTCGTGTGAAATCCTTTAAAAACACCTACCAAGCAATTTTGGAAATGAAGGGGCCATTGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAGCGAGAGTTGTTTGATAGTTGGCTTAAGGTATTAATTTCACAGTACAATTTTATGTACTTCTATAATCCCAATCATCAACTAATTTGTTTGAATTATGTTTGTACAGATTCATCCTGTAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTATCCTATGTCTTCGGCAAAGATCGGGCAACAAGAGTACGTTTAAAGACCTTTGCTGATGTGGGATCTAATGTGCATTAAAATTTTAATGATGGTGTTCCCCTTGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGTAGGTCGATCAAGTGAAGGAAGAAATTGTTCAATTGGAAATAAGAGAAAA

mRNA sequence

ATGGCAGAGAAGTTTCCTGGCACTAATATCCAAGGATCAGCGACTATAGATTGTCGTGTGAAATCCTTTAAAAACACCTACCAAGCAATTTTGGAAATGAAGGGGCCATTGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAGCGAGAGTTGTTTGATAGTTGGCTTAAGATTCATCCTGTAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTATCCTATGTCTTCGGCAAAGATCGGGCAACAAGAGTACGTTTAAAGACCTTTGCTGATGTGGGATCTAATGTGCATTAAAATTTTAATGATGGTGTTCCCCTTGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGTAGGTCGATCAAGTGAAGGAAGAAATTGTTCAATTGGAAATAAGAGAAAA

Coding sequence (CDS)

ATGGCAGAGAAGTTTCCTGGCACTAATATCCAAGGATCAGCGACTATAGATTGTCGTGTGAAATCCTTTAAAAACACCTACCAAGCAATTTTGGAAATGAAGGGGCCATTGTGTAGTGGCTTTGGATGGAACGAAGAATATCAATGCATCATTGCAGAGCGAGAGTTGTTTGATAGTTGGCTTAAGATTCATCCTGTAGCCAAAGGCCTTCTACACAAATCATTTCCATATTATGATGATCTATCCTATGTCTTCGGCAAAGATCGGGCAACAAGAGTACGTTTAAAGACCTTTGCTGATGTGGGATCTAATGTGCATTAAAATTTTAATGATGGTGTTCCCCTTGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGACTGGATATGTCACTAGATGAGATGTTAGGAACACGTGTAGGTCGATCAAGTGAAGGAAGAAATTGTTCAATTGGAAATAAGAGAAAA

Protein sequence

MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSWLKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHDQDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK

Homology

[Close]

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PGTNIQ S+TIDC VKS K TY AI EM+GP CSGFGWNEE+QCIIAER+LFDSW
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP AKGLLHKSFPYYDDLSYVFGKDRAT  R +TF +VGSNV   FND +PLGDSHD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 160
           +DIPTMYSQG+ MS DEM G R G++SE RNCS  +KRK
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRK 210

[Close]

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 258.5 bits (659), Expect = 1.9e-65
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PGTNIQ S+TIDC VKS K TY AI EM+GP CSGFGWNEE+QCIIAER+LFDSW
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP AKGLLHKSFPYYDDLSYVFGKDRAT  R +TF +VGSNV   FND +PLGDSHD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 160
           +DIPTMYSQG+ MS DEM G R G++SE RNCS  +KRK
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRK 210

[Close]

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL
Match: A0A5A7TJS2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold335G00710 PE=4 SV=1)

HSP 1 Score: 211.1 bits (536), Expect = 3.5e-51
Identity = 96/136 (70.59%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           M +K   TNIQGS  +DCRVKS K    +   M+GP CSGFGWNE++QCIIAER+LFD+W
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP A+GLLHKSFPYYDDLSYVF KDRAT  RL+TFADVGSNV   FNDGVPLGDS+D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 QDIPTMYSQGLDMSLD 137
           QDIP MYSQG+ +S D
Sbjct: 343 QDIPAMYSQGVHISPD 358

[Close]

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL
Match: A0A5D3D8J6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold307G00030 PE=4 SV=1)

HSP 1 Score: 206.5 bits (524), Expect = 8.5e-50
Identity = 93/130 (71.54%), Postives = 106/130 (81.54%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           M +K   TNIQGS  +DCRVKS K    +   ++GP CSGFGWNE++QCIIAER+LFD+W
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRIRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP A+GLLHKSFPYYDDLSYVF KDRAT  RL+TFADVGSNV   FNDGVPLGDS+D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 QDIPTMYSQG 131
           QDIP MYSQG
Sbjct: 343 QDIPAMYSQG 352

[Close]

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL
Match: A0A5A7TFA4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00550 PE=4 SV=1)

HSP 1 Score: 199.1 bits (505), Expect = 1.4e-47
Identity = 90/159 (56.60%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PG  ++ +  IDCR+K+ K T+QAI+EM+GP CSGFGWN+E +CI+AE+ELFD+W
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           ++ HP AKGLL+K FPYYD+L+YVFG+DRAT    +TFADVGSN      D   +GD  +
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEPGGGYDRFDMGDG-N 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 160
           +D P +YSQG+D+S D++  +R  R+SEGR  S G+KRK
Sbjct: 172 EDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209

[Close]

BLAST of Chy6G118470.1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 254 bits (650), Expect = 3.15e-82
Identity = 120/159 (75.47%), Postives = 133/159 (83.65%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PGTNIQ S+TIDC VKS K TY AI EM+GP CSGFGWNEE+QCIIAER+LFDSW
Sbjct: 52  MAEKLPGTNIQESSTIDCHVKSLKKTYHAIAEMRGPSCSGFGWNEEFQCIIAERDLFDSW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP AKGLLHKSFPYYDDLSYVFGKDRAT  R +TF +VGSNV   FND +PLGDSHD
Sbjct: 112 IKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTIPLGDSHD 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 159
           +DIPTMYSQG+ MS DEM G R G++SE RNCS  +KRK
Sbjct: 172 EDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRK 210

[Close]

BLAST of Chy6G118470.1 vs. NCBI nr
Match: KAA0043564.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 206 bits (524), Expect = 1.63e-62
Identity = 96/136 (70.59%), Postives = 110/136 (80.88%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           M +K   TNIQGS  +DCRVKS K    +   M+GP CSGFGWNE++QCIIAER+LFD+W
Sbjct: 223 MVKKLSDTNIQGSLPMDCRVKSLKKHLPSNFRMRGPSCSGFGWNEKFQCIIAERDLFDNW 282

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           +K HP A+GLLHKSFPYYDDLSYVF KDRAT  RL+TFADVGSNV   FNDGVPLGDS+D
Sbjct: 283 VKSHPTAEGLLHKSFPYYDDLSYVFDKDRATEARLETFADVGSNVLNMFNDGVPLGDSYD 342

Query: 121 QDIPTMYSQGLDMSLD 136
           QDIP MYSQG+ +S D
Sbjct: 343 QDIPAMYSQGVHISPD 358

[Close]

BLAST of Chy6G118470.1 vs. NCBI nr
Match: TYK10915.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (495), Expect = 2.09e-59
Identity = 90/159 (56.60%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PG  ++ +  IDCR+K+ K T+QAI EM+GP CSGFGWN+E +CI+AE+ELFD+W
Sbjct: 2   MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIVAEKELFDNW 61

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           ++ HP AKGLL+K FPYYD+L+YVFG+DRAT    +TFADVGSN      D   +GD + 
Sbjct: 62  VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN- 121

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 159
           +D P +YSQG+D+S D++  +R  R+SEGR  S G+KRK
Sbjct: 122 EDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 159

[Close]

BLAST of Chy6G118470.1 vs. NCBI nr
Match: KAA0041588.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 196 bits (497), Expect = 4.50e-59
Identity = 90/159 (56.60%), Postives = 121/159 (76.10%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PG  ++ +  IDCR+K+ K T+QAI+EM+GP CSGFGWN+E +CI+AE+ELFD+W
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIVEMRGPACSGFGWNDEEKCIVAEKELFDNW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           ++ HP AKGLL+K FPYYD+L+YVFG+DRAT    +TFADVGSN      D   +GD + 
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATDRFAETFADVGSNEPGGGYDRFDMGDGN- 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 159
           +D P +YSQG+D+S D++  +R  R+SEGR  S G+KRK
Sbjct: 172 EDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209

[Close]

BLAST of Chy6G118470.1 vs. NCBI nr
Match: KAA0066208.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 195 bits (496), Expect = 6.37e-59
Identity = 91/159 (57.23%), Postives = 120/159 (75.47%), Query Frame = 0


Query: 1   MAEKFPGTNIQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSW 60
           MAEK PG  ++ +  IDCR+K+ K T+QAI EM+GP CSGFGWN+E +CIIAE+ELFD+W
Sbjct: 52  MAEKLPGCQVRATTVIDCRIKTLKRTFQAIAEMRGPACSGFGWNDEEKCIIAEKELFDNW 111

Query: 61  LKIHPVAKGLLHKSFPYYDDLSYVFGKDRATRVRLKTFADVGSNVH*NFNDGVPLGDSHD 120
           ++ HP AKGLL+K FPYYD+L+YVFG+DRAT    +TFADVGSN      D   +GD + 
Sbjct: 112 VRSHPAAKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGN- 171

Query: 121 QDIPTMYSQGLDMSLDEMLGTRVGRSSEGRNCSIGNKRK 159
           +D P +YSQG+D+S D++  +R  R+SEGR  S G+KRK
Sbjct: 172 EDFPPVYSQGVDISQDDVRASRPSRASEGRTGSSGSKRK 209

[Close]

BLAST of Chy6G118470.1 vs. TAIR 10
Match: AT4G02210.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2); Has 791 Blast hits to 465 proteins in 19 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 17; Plants - 748; Viruses - 0; Other Eukaryotes - 26 (source: NCBI BLink). )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 22/76 (28.95%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 10  IQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSWLKIHPVAKG 69
           + G   +  R K+ +N ++++  +   +  GF W++  Q ++A+  ++D +LKIHP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLHKSFPYYDDLSYVF 86
              KS P Y DL  V+
Sbjct: 120 FRIKSIPCYKDLCLVY 133

[Close]

BLAST of Chy6G118470.1 vs. TAIR 10
Match: AT4G02210.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G24960.2). )

HSP 1 Score: 50.8 bits (120), Expect = 1.1e-06
Identity = 22/76 (28.95%), Postives = 43/76 (56.58%), Query Frame = 0


Query: 10  IQGSATIDCRVKSFKNTYQAILEMKGPLCSGFGWNEEYQCIIAERELFDSWLKIHPVAKG 69
           + G   +  R K+ +N ++++  +   +  GF W++  Q ++A+  ++D +LKIHP ++ 
Sbjct: 60  LYGKDVLKNRHKTLRNLFKSVNNLL--IEDGFSWDDTRQMVVADNCVWDEYLKIHPDSRS 119

Query: 70  LLHKSFPYYDDLSYVF 86
              KS P Y DL  V+
Sbjct: 120 FRIKSIPCYKDLCLVY 133

[Close]

BLAST of Chy6G118470.1 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 46.2 bits (108), Expect = 2.8e-05
Identity = 15/50 (30.00%), Postives = 33/50 (66.00%), Query Frame = 0


Query: 39  SGFGWNEEYQCIIAERELFDSWLKIHPVAKGLLHKSFPYYDDLSYVFGKD 89
           +GF W+     +IA+ ++++++++ HP A+    K+ P Y +L ++FGK+
Sbjct: 399 NGFSWDARRDMVIADDDIWNTYIQAHPEARSYRVKTIPSYPNLCFIFGKE 448

[Close]

BLAST of Chy6G118470.1 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 6.3e-05
Identity = 19/46 (41.30%), Postives = 29/46 (63.04%), Query Frame = 0


Query: 40  GFGWNEEYQCIIAERELFDSWLKIHPVAKGLLHKSFPYYDDLSYVF 86
           GF W+E    I A+  ++DS++K HP+A+    KS P Y+DL  +F
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIF 290

The following BLAST results are available for this feature:

BLAST of Chy6G118470.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy6G118470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	1.9e-65	75.47	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	1.9e-65	75.47	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5A7TJS2	3.5e-51	70.59	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3D8J6	8.5e-50	71.54	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7TFA4	1.4e-47	56.60	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]

BLAST of Chy6G118470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	3.15e-82	75.47	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0043564.1	1.63e-62	70.59	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK10915.1	2.09e-59	56.60	retrotransposon protein [Cucumis melo var. makuwa] >TYK15088.1 retrotransposon p...	[more]
KAA0041588.1	4.50e-59	56.60	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0066208.1	6.37e-59	57.23	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Chy6G118470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G02210.1	1.1e-06	28.95	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT4G02210.2	1.1e-06	28.95	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.2	2.8e-05	30.00	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT2G24960.1	6.3e-05	41.30	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 1..131
None	No IPR available	PANTHER	PTHR46250:SF3	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN	coord: 1..131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy6G118470	Chy6G118470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G118470.1.exon1	Chy6G118470.1.exon1	exon
Chy6G118470.1.exon2	Chy6G118470.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy6G118470.1.cds1	Chy6G118470.1.cds1	CDS
Chy6G118470.1.cds2	Chy6G118470.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy6G118470.1	Chy6G118470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane