Chy5G103740.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy5G103740.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Dynein light chain
Location	chrH05: 17417774 .. 17419417 (+)
Sequence length	582
RNA-Seq Expression	Chy5G103740.1
Synteny	Chy5G103740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCCACCCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACCAATCTCGCGACGGAGGTCGTAATGTATCGTCACGTGAGCCTATTTCTATGAGTTCAGTGGATAAGACATCAATTTACAAGTATAACTGGTTGGGTAGGAAATCCAAGAAAGCAACTGATCAACACGGTGGTGGTGGTGGTGGTGGTGTCGGGGGCGTCAGAGAGGAGATAATGGGAGGAAGAAAAGTGGTGGTTGAAGGTAGGAAATCAGTTTCTCATGTGGAAACAAATTTGGGATCAGTAGCCTCCTTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAAATTATGCAAATTCAAGCTTTTAGAACTGCAAGGAGAAGTTATGATAGTTTGGAGAAGTTTAGCTCAAAACATATGGCTTACAATATTAAAAAGGTATTTATATATTTATCAGTTATATTGTTCACATTGGCATGTTTTGTTTAGTGGTTAGTTTTTCACAGAACTTCTGTCTTTTGGTGTATCATTTTTCTTTTCTAATCTTAGTTGTTATGAAATCAACAAGTAAAGAAAACAAGAAAACACAACATAGAGAATAATGTGTTAGTTATGTCCACAAACAAAGGAAAAGAGCAGTACGGATTGTAGAGACTTCAGTTTGGTTTACTGTATATAGAGAATTCCTTTAAACTCTAATGTCAAATTTACATATATTGATGGGGTTTGATCACAGAACGAAAAATTATAAGTAAAACTAGTTTTTTTGGCCTTTTTGGGCATTGGGAATTTCATATTAGATTTGGTCTTTTTGTGAGGAAATGTTGAAAGAAAAGGGGCAGAGCAGAAGCTCCTTTTGATTTGTTGCTTTCTTGATTTCCTTCTTTTGGTCATACTCAGAAAGAAAATCAACAAGTGGAAATGGATAATCGTAACTTTTCTAGCTGTCAGTCTTTCTATCGAGTATGGGAATTCAAACCTTCAACTTTAAAAAAATTTAGTAAATGACAAGTTTGAGTTAGGTTCATATTCGCTGTCTAAACTCGATTTGTTGTTCACTTAATTCCATCACTAAATCTGTGCTTTGTTTAATCAGAAACTAAGTTTTGAGACAGAATTCAAGTGGGCAATTGGTCAAAGGATCCGACAGCCCATGTGTGTTAGATCAGCGATTAGCACATATTTTAAAGCTAAAAATCCCATATTTTTCATTGAAATTGAAGCCCTTTTTCTGATCCATGTGCATTTCTTGATTGTTTAGTGTTCCTAATTTCTCTTACAATCATTCTGAAAGAATCTCACTCATTACTAAATTATTGTAACTGAGATTAGTTACGAGACTTGAATCAAGAAACAAGTGACAAAGTTCAAAGGTGTTTTTCTTTCGTAATTCAGCGAACTCATATAAAAAATTATATGATAAGAGTAAGTTTTAGAACAAATATTTGGTTTGACAGACTACATTGATTTATACTGATTAAAATTGGGGATTAATGGCAGGAATTTGATAAAGTATATGGGCCAGCTTGGCATTGTATTGTGGGATCAAGTTTTGGGTCATTTGTGACTCACTCAACAGGTTGTTTCCTTTATTTTTCAATGGAGAAATTGTACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTATTGAATGA

mRNA sequence

ATGGCCACCCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACCAATCTCGCGACGGAGGTCGTAATGTATCGTCACGTGAGCCTATTTCTATGAGTTCAGTGGATAAGACATCAATTTACAAGTATAACTGGTTGGGTAGGAAATCCAAGAAAGCAACTGATCAACACGGTGGTGGTGGTGGTGGTGGTGTCGGGGGCGTCAGAGAGGAGATAATGGGAGGAAGAAAAGTGGTGGTTGAAGGTAGGAAATCAGTTTCTCATGTGGAAACAAATTTGGGATCAGTAGCCTCCTTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAAATTATGCAAATTCAAGCTTTTAGAACTGCAAGGAGAAGTTATGATAGTTTGGAGAAGTTTAGCTCAAAACATATGGCTTACAATATTAAAAAGGAATTTGATAAAGTATATGGGCCAGCTTGGCATTGTATTGTGGGATCAAGTTTTGGGTCATTTGTGACTCACTCAACAGGTTGTTTCCTTTATTTTTCAATGGAGAAATTGTACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTATTGAATGA

Coding sequence (CDS)

ATGGCCACCCTAAACAAGCAAATGAAAGGATTCAAATCCTTCTACCAATCTCGCGACGGAGGTCGTAATGTATCGTCACGTGAGCCTATTTCTATGAGTTCAGTGGATAAGACATCAATTTACAAGTATAACTGGTTGGGTAGGAAATCCAAGAAAGCAACTGATCAACACGGTGGTGGTGGTGGTGGTGGTGTCGGGGGCGTCAGAGAGGAGATAATGGGAGGAAGAAAAGTGGTGGTTGAAGGTAGGAAATCAGTTTCTCATGTGGAAACAAATTTGGGATCAGTAGCCTCCTTTCTTCAAGTGAAGGTATTGGTATCAGATATGCCTGAAATTATGCAAATTCAAGCTTTTAGAACTGCAAGGAGAAGTTATGATAGTTTGGAGAAGTTTAGCTCAAAACATATGGCTTACAATATTAAAAAGGAATTTGATAAAGTATATGGGCCAGCTTGGCATTGTATTGTGGGATCAAGTTTTGGGTCATTTGTGACTCACTCAACAGGTTGTTTCCTTTATTTTTCAATGGAGAAATTGTACATTTTGTTGTTTAGAACTAAGATTCAGAAAGCTATTGAATGA

Protein sequence

MATLNKQMKGFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGGGGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKAIE*

Homology

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BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot
Match: O02414 (Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=1043166 PE=3 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 8.8e-14
Identity = 42/81 (51.85%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEIMQIQAFRTARRSYDSLEKFS-SKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVT 166
           +DMPE MQ  A   A +   +LEKF+  K +A  IKKEFDK Y P WHCIVG +FGS+VT
Sbjct: 11  ADMPEDMQQDAVDCATQ---ALEKFNIEKDIAAYIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEKLYILLFRT 187
           H T  F+YF + ++ +LLF++
Sbjct: 71  HETKHFIYFYLGQVAVLLFKS 88

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BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot
Match: Q86A88 (Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=3 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.2e-13
Identity = 40/84 (47.62%), Postives = 54/84 (64.29%), Query Frame = 0


Query: 102 VKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFG 161
           + V  +DMP+ MQ  A     ++++  E    + +A  IKKEFDK Y P WHCIVG SFG
Sbjct: 8   INVKNADMPDFMQQDATECTIKAFE--ETNIERDIAMIIKKEFDKKYSPTWHCIVGKSFG 67

Query: 162 SFVTHSTGCFLYFSMEKLYILLFR 186
           SFVTH T  F+YF++ K  +LLF+
Sbjct: 68  SFVTHETKNFIYFNINKHSVLLFK 89

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BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot
Match: P61285 (Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEIMQIQAFRTARRSYDSLEKFS-SKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVT 166
           +DM E MQ  +   A +   +LEK++  K +A +IKKEFDK Y P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEKLYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

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BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot
Match: P63167 (Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEIMQIQAFRTARRSYDSLEKFS-SKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVT 166
           +DM E MQ  +   A +   +LEK++  K +A +IKKEFDK Y P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEKLYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

[Close]

BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot
Match: P61273 (Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 7.5e-13
Identity = 40/81 (49.38%), Postives = 56/81 (69.14%), Query Frame = 0


Query: 107 SDMPEIMQIQAFRTARRSYDSLEKFS-SKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVT 166
           +DM E MQ  +   A +   +LEK++  K +A +IKKEFDK Y P WHCIVG +FGS+VT
Sbjct: 11  ADMSEEMQQDSVECATQ---ALEKYNIEKDIAAHIKKEFDKKYNPTWHCIVGRNFGSYVT 70

Query: 167 HSTGCFLYFSMEKLYILLFRT 187
           H T  F+YF + ++ ILLF++
Sbjct: 71  HETKHFIYFYLGQVAILLFKS 88

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BLAST of Chy5G103740.1 vs. ExPASy TrEMBL
Match: A0A0A0LKY0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 1.9e-99
Identity = 190/194 (97.94%), Postives = 193/194 (99.48%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQH-GG 60
           MATLNKQMKGFKSFY+SRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKAT+QH GG
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGGG 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
           GGGGGVGG+REEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR
Sbjct: 61  GGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 194
           YILLFRTKIQKAIE
Sbjct: 181 YILLFRTKIQKAIE 194

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BLAST of Chy5G103740.1 vs. ExPASy TrEMBL
Match: A0A1S3C671 (uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=4 SV=1)

HSP 1 Score: 355.5 bits (911), Expect = 1.4e-94
Identity = 184/194 (94.85%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRD-GGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGG 60
           MATLNKQMKGFKSFY+SRD GGRNVSSREP+S SSVDKTSIYKYNWLGRKSKKATDQH  
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQH-- 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
            GGGG GG+ EEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR
Sbjct: 61  SGGGGAGGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 194
           YILLFRTKIQKAIE
Sbjct: 181 YILLFRTKIQKAIE 192

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BLAST of Chy5G103740.1 vs. ExPASy TrEMBL
Match: A0A6J1G363 (uncharacterized protein LOC111450366 OS=Cucurbita moschata OX=3662 GN=LOC111450366 PE=4 SV=1)

HSP 1 Score: 303.1 bits (775), Expect = 8.1e-79
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGG-RNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGG 60
           MA+LNKQMKGFKSFY+SRDG   NV +R  +SMSSVDKTS+YKYNWL  KSKK +DQ+GG
Sbjct: 1   MASLNKQMKGFKSFYKSRDGAHHNVPARNLVSMSSVDKTSVYKYNWLNGKSKKTSDQNGG 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
           GGG           GGRKVVVEGRKSVS VETNL SVA+FLQVKVLVSDMPE+MQ++AFR
Sbjct: 61  GGG----------CGGRKVVVEGRKSVSQVETNLASVAAFLQVKVLVSDMPEMMQVEAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSK+MAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKYMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 194
           YILLFRTKIQKA E
Sbjct: 181 YILLFRTKIQKANE 184

[Close]

BLAST of Chy5G103740.1 vs. ExPASy TrEMBL
Match: A0A6J1CN34 (uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013113 PE=4 SV=1)

HSP 1 Score: 300.4 bits (768), Expect = 5.3e-78
Identity = 159/200 (79.50%), Postives = 177/200 (88.50%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHG-- 60
           MATLNKQ+KGFKSFY+SRDG R+ ++ +P   + +D+  +YKYNWLGRKSKKATDQHG  
Sbjct: 1   MATLNKQIKGFKSFYKSRDGARDTAAFDP---APLDRVPVYKYNWLGRKSKKATDQHGGR 60

Query: 61  ----GGGGGGVGGVREEIMGGRK-VVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIM 120
               GGGGGG GG   E MGGRK +VVEGRKSVSHVETNL SVA+FLQVKVLVSDMPE+M
Sbjct: 61  RGMEGGGGGGDGG---EGMGGRKLLVVEGRKSVSHVETNLASVAAFLQVKVLVSDMPEMM 120

Query: 121 QIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLY 180
           Q+QAFR+ARRSYDSLEKFSSKHMA++IKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLY
Sbjct: 121 QLQAFRSARRSYDSLEKFSSKHMAHSIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLY 180

Query: 181 FSMEKLYILLFRTKIQKAIE 194
           FSMEKLYILLFRTKIQKA E
Sbjct: 181 FSMEKLYILLFRTKIQKATE 194

[Close]

BLAST of Chy5G103740.1 vs. ExPASy TrEMBL
Match: A0A6J1HN27 (uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683 PE=4 SV=1)

HSP 1 Score: 292.0 bits (746), Expect = 1.9e-75
Identity = 159/200 (79.50%), Postives = 169/200 (84.50%), Query Frame = 0


Query: 1   MATLNKQMK-GFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHG- 60
           M T+NKQMK GFKSFY+SRDG  NV + E +   SVDK  +YKYNWLGRKSKKA  QHG 
Sbjct: 1   MTTVNKQMKGGFKSFYKSRDGACNVQACESV---SVDKAYVYKYNWLGRKSKKAVHQHGG 60

Query: 61  -----GGGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIM 120
                GGGGG  GG  E    GRK+VVEGRKSVSHVETNLGSVASFLQVKVLVSDMPE+M
Sbjct: 61  PRGAKGGGGGDEGGGTE----GRKMVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEMM 120

Query: 121 QIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLY 180
           QIQAFR ARRSYDSLEKFSSK MAYN+KKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLY
Sbjct: 121 QIQAFRCARRSYDSLEKFSSKLMAYNLKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLY 180

Query: 181 FSMEKLYILLFRTKIQKAIE 194
           FSME+LYILLFRTKIQKA E
Sbjct: 181 FSMEELYILLFRTKIQKATE 193

[Close]

BLAST of Chy5G103740.1 vs. NCBI nr
Match: XP_031736570.1 (uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetical protein Csa_019270 [Cucumis sativus])

HSP 1 Score: 370 bits (950), Expect = 7.37e-129
Identity = 190/198 (95.96%), Postives = 193/198 (97.47%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGGG 60
           MATLNKQMKGFKSFY+SRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKAT+QHGGG
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATEQHGGG 60

Query: 61  GGGG-----VGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQI 120
           GGGG     VGG+REEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQI
Sbjct: 61  GGGGGGGGGVGGIREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQI 120

Query: 121 QAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFS 180
           QAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFS
Sbjct: 121 QAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFS 180

Query: 181 MEKLYILLFRTKIQKAIE 193
           MEKLYILLFRTKIQKAIE
Sbjct: 181 MEKLYILLFRTKIQKAIE 198

[Close]

BLAST of Chy5G103740.1 vs. NCBI nr
Match: XP_008457739.1 (PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo])

HSP 1 Score: 356 bits (913), Expect = 2.61e-123
Identity = 184/194 (94.85%), Postives = 187/194 (96.39%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGG-RNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGG 60
           MATLNKQMKGFKSFY+SRDGG RNVSSREP+S SSVDKTSIYKYNWLGRKSKKATDQH G
Sbjct: 1   MATLNKQMKGFKSFYKSRDGGGRNVSSREPVSTSSVDKTSIYKYNWLGRKSKKATDQHSG 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
           GGG   GG+ EEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR
Sbjct: 61  GGG--AGGIGEEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 193
           YILLFRTKIQKAIE
Sbjct: 181 YILLFRTKIQKAIE 192

[Close]

BLAST of Chy5G103740.1 vs. NCBI nr
Match: XP_038890919.1 (uncharacterized protein LOC120080348 [Benincasa hispida])

HSP 1 Score: 340 bits (871), Expect = 5.15e-117
Identity = 173/193 (89.64%), Postives = 180/193 (93.26%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGRNVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGGG 60
           M TLNKQMKGFKSFY+SRDGGRNV +REP+S SS+DKTSIYKYNWLGRK+KKATDQHG G
Sbjct: 1   MTTLNKQMKGFKSFYKSRDGGRNVPTREPVSTSSMDKTSIYKYNWLGRKTKKATDQHGRG 60

Query: 61  GGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFRT 120
           G        EEIMGGRKVVVEGRKSVSHVETNLGSVA+FLQVKVLVSDMPEIMQIQAFRT
Sbjct: 61  G--------EEIMGGRKVVVEGRKSVSHVETNLGSVAAFLQVKVLVSDMPEIMQIQAFRT 120

Query: 121 ARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLY 180
           ARRSYDSLEKFSSKHMAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLY
Sbjct: 121 ARRSYDSLEKFSSKHMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLY 180

Query: 181 ILLFRTKIQKAIE 193
           ILLFRTKIQKA E
Sbjct: 181 ILLFRTKIQKATE 185

[Close]

BLAST of Chy5G103740.1 vs. NCBI nr
Match: KAG7030397.1 (hypothetical protein SDJN02_08744, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 306 bits (785), Expect = 6.81e-104
Identity = 160/194 (82.47%), Postives = 173/194 (89.18%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGR-NVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGG 60
           MA+LNKQMKGFKSFY+SRDG   NV +R P+SMSSVDKTS+YKYNWL  KSKKA+DQ+GG
Sbjct: 1   MASLNKQMKGFKSFYKSRDGAHHNVPARNPVSMSSVDKTSVYKYNWLNGKSKKASDQNGG 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
           GGG G GG        R VVVEGRKSVS VETNL SVA+FLQVKVLVSDMPE+MQ++AFR
Sbjct: 61  GGGCGCGG--------RTVVVEGRKSVSQVETNLASVAAFLQVKVLVSDMPEMMQVEAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSK+MAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKYMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 193
           YILLFRTKIQKA E
Sbjct: 181 YILLFRTKIQKANE 186

[Close]

BLAST of Chy5G103740.1 vs. NCBI nr
Match: XP_022946213.1 (uncharacterized protein LOC111450366 [Cucurbita moschata])

HSP 1 Score: 303 bits (776), Expect = 1.49e-102
Identity = 158/194 (81.44%), Postives = 171/194 (88.14%), Query Frame = 0


Query: 1   MATLNKQMKGFKSFYQSRDGGR-NVSSREPISMSSVDKTSIYKYNWLGRKSKKATDQHGG 60
           MA+LNKQMKGFKSFY+SRDG   NV +R  +SMSSVDKTS+YKYNWL  KSKK +DQ+GG
Sbjct: 1   MASLNKQMKGFKSFYKSRDGAHHNVPARNLVSMSSVDKTSVYKYNWLNGKSKKTSDQNGG 60

Query: 61  GGGGGVGGVREEIMGGRKVVVEGRKSVSHVETNLGSVASFLQVKVLVSDMPEIMQIQAFR 120
           GGG           GGRKVVVEGRKSVS VETNL SVA+FLQVKVLVSDMPE+MQ++AFR
Sbjct: 61  GGG----------CGGRKVVVEGRKSVSQVETNLASVAAFLQVKVLVSDMPEMMQVEAFR 120

Query: 121 TARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180
           TARRSYDSLEKFSSK+MAYNIKKEFDKV+GPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL
Sbjct: 121 TARRSYDSLEKFSSKYMAYNIKKEFDKVHGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKL 180

Query: 181 YILLFRTKIQKAIE 193
           YILLFRTKIQKA E
Sbjct: 181 YILLFRTKIQKANE 184

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BLAST of Chy5G103740.1 vs. TAIR 10
Match: AT5G20110.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 165.6 bits (418), Expect = 3.9e-41
Identity = 80/115 (69.57%), Postives = 94/115 (81.74%), Query Frame = 0


Query: 81  EGRKSVSHVE----TNLGSVASFLQVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHM 140
           EGRKSVSHVE      + + A  L V++L +DMP  MQ  AFR AR + DSLEKFSSKHM
Sbjct: 92  EGRKSVSHVERDTAARIEAAAEMLTVRILAADMPGFMQAHAFRCARMTLDSLEKFSSKHM 151

Query: 141 AYNIKKEFDKVYGPAWHCIVGSSFGSFVTHSTGCFLYFSMEKLYILLFRTKIQKA 192
           A+N+KKEFDK YGPAWHCIVGSSFGSFVTHSTGCF+YFSM+KLY+LLF+TK++ A
Sbjct: 152 AFNLKKEFDKGYGPAWHCIVGSSFGSFVTHSTGCFIYFSMDKLYVLLFKTKVRPA 206

[Close]

BLAST of Chy5G103740.1 vs. TAIR 10
Match: AT1G23220.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 99.4 bits (246), Expect = 3.4e-21
Identity = 47/89 (52.81%), Postives = 66/89 (74.16%), Query Frame = 0


Query: 102 VKVLVSDMPEIMQIQAFRTARRSYDSLE-KFSSKHMAYNIKKEFDKVYGPAWHCIVGSSF 161
           V+V  SDMP   Q +AF  +R   ++   K  +K +A+ +KK+FD  YGPAWHCIVG+SF
Sbjct: 36  VRVRASDMPLPQQNRAFSLSREILNATPGKADNKRLAHALKKDFDSAYGPAWHCIVGTSF 95

Query: 162 GSFVTHSTGCFLYFSMEKLYILLFRTKIQ 190
           GS+VTHSTG FLYF ++K+Y+LLF+T ++
Sbjct: 96  GSYVTHSTGGFLYFQIDKVYVLLFKTAVE 124

[Close]

BLAST of Chy5G103740.1 vs. TAIR 10
Match: AT1G52240.2 (RHO guanyl-nucleotide exchange factor 11 )

HSP 1 Score: 84.0 bits (206), Expect = 1.5e-16
Identity = 43/88 (48.86%), Postives = 58/88 (65.91%), Query Frame = 0


Query: 100 LQVKVLV--SDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVG 159
           L+ K +V  SDMP  MQ+QA   A ++ D  + F  K +A +IKKEFD+ YG  W C+VG
Sbjct: 2   LEGKAMVEDSDMPVKMQMQAMAFASQALDLFDVFDCKSIAGHIKKEFDERYGSGWQCVVG 61

Query: 160 SSFGSFVTHSTGCFLYFSMEKLYILLFR 186
           S+FG F THS G F+YF +E L  L+F+
Sbjct: 62  SNFGCFFTHSKGTFIYFQLETLKFLIFK 89

[Close]

BLAST of Chy5G103740.1 vs. TAIR 10
Match: AT3G16120.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 82.0 bits (201), Expect = 5.7e-16
Identity = 40/85 (47.06%), Postives = 56/85 (65.88%), Query Frame = 0


Query: 101 QVKVLVSDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSF 160
           + KV  +DMP  MQ+QA + A +S D  + F S  +A +IKKEFD+ YG  W C+VG++F
Sbjct: 5   KAKVEETDMPVKMQMQAMKIASQSLDLFDVFDSISIAAHIKKEFDERYGSGWQCVVGTNF 64

Query: 161 GSFVTHSTGCFLYFSMEKLYILLFR 186
           G F THS G F+YF +  L  L+F+
Sbjct: 65  GCFFTHSKGTFIYFHLGTLNFLIFK 89

[Close]

BLAST of Chy5G103740.1 vs. TAIR 10
Match: AT4G27360.1 (Dynein light chain type 1 family protein )

HSP 1 Score: 77.8 bits (190), Expect = 1.1e-14
Identity = 37/82 (45.12%), Postives = 52/82 (63.41%), Query Frame = 0


Query: 107 SDMPEIMQIQAFRTARRSYDSLEKFSSKHMAYNIKKEFDKVYGPAWHCIVGSSFGSFVTH 166
           +DM + M+  A   A ++ D  +      +A  IKKEFD+ YG  W CIVG+ FGSFVTH
Sbjct: 11  TDMKQTMKEDALSLASKALDCFDVTEPTQIARFIKKEFDRSYGSGWQCIVGTHFGSFVTH 70

Query: 167 STGCFLYFSMEKLYILLFRTKI 189
            +GCF++FS+  L ILLF+  +
Sbjct: 71  CSGCFIHFSVGSLTILLFKGSV 92

The following BLAST results are available for this feature:

BLAST of Chy5G103740.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O02414	8.8e-14	51.85	Dynein light chain LC6, flagellar outer arm OS=Heliocidaris crassispina OX=10431...	[more]
Q86A88	1.2e-13	47.62	Dynein light chain, cytoplasmic OS=Dictyostelium discoideum OX=44689 GN=dlcB PE=...	[more]
P61285	7.5e-13	49.38	Dynein light chain 1, cytoplasmic OS=Bos taurus OX=9913 GN=DYNLL1 PE=1 SV=1	[more]
P63167	7.5e-13	49.38	Dynein light chain 1, cytoplasmic OS=Homo sapiens OX=9606 GN=DYNLL1 PE=1 SV=1	[more]
P61273	7.5e-13	49.38	Dynein light chain 1, cytoplasmic OS=Macaca fascicularis OX=9541 GN=DYNLL1 PE=3 ...	[more]

BLAST of Chy5G103740.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LKY0	1.9e-99	97.94	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G006120 PE=4 SV=1	[more]
A0A1S3C671	1.4e-94	94.85	uncharacterized protein LOC103497357 OS=Cucumis melo OX=3656 GN=LOC103497357 PE=...	[more]
A0A6J1G363	8.1e-79	81.44	uncharacterized protein LOC111450366 OS=Cucurbita moschata OX=3662 GN=LOC1114503...	[more]
A0A6J1CN34	5.3e-78	79.50	uncharacterized protein LOC111013113 OS=Momordica charantia OX=3673 GN=LOC111013...	[more]
A0A6J1HN27	1.9e-75	79.50	uncharacterized protein LOC111465683 OS=Cucurbita maxima OX=3661 GN=LOC111465683...	[more]

BLAST of Chy5G103740.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_031736570.1	7.37e-129	95.96	uncharacterized protein LOC101208065 [Cucumis sativus] >KAE8651528.1 hypothetica...	[more]
XP_008457739.1	2.61e-123	94.85	PREDICTED: uncharacterized protein LOC103497357 [Cucumis melo]	[more]
XP_038890919.1	5.15e-117	89.64	uncharacterized protein LOC120080348 [Benincasa hispida]	[more]
KAG7030397.1	6.81e-104	82.47	hypothetical protein SDJN02_08744, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022946213.1	1.49e-102	81.44	uncharacterized protein LOC111450366 [Cucurbita moschata]	[more]

BLAST of Chy5G103740.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20110.1	3.9e-41	69.57	Dynein light chain type 1 family protein	[more]
AT1G23220.1	3.4e-21	52.81	Dynein light chain type 1 family protein	[more]
AT1G52240.2	1.5e-16	48.86	RHO guanyl-nucleotide exchange factor 11	[more]
AT3G16120.1	5.7e-16	47.06	Dynein light chain type 1 family protein	[more]
AT4G27360.1	1.1e-14	45.12	Dynein light chain type 1 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001372	Dynein light chain, type 1/2	SMART	SM01375	Dynein_light_2	coord: 97..186 e-value: 2.1E-38 score: 143.6
IPR001372	Dynein light chain, type 1/2	PFAM	PF01221	Dynein_light	coord: 102..186 e-value: 1.8E-30 score: 105.2
IPR001372	Dynein light chain, type 1/2	PANTHER	PTHR11886	DYNEIN LIGHT CHAIN	coord: 69..192
IPR037177	Dynein light chain superfamily	GENE3D	3.30.740.10	Protein Inhibitor Of Neuronal Nitric Oxide Synthase;	coord: 100..186 e-value: 1.9E-31 score: 110.1
IPR037177	Dynein light chain superfamily	SUPERFAMILY	54648	DLC	coord: 99..186
None	No IPR available	PANTHER	PTHR11886:SF37	DYNEIN LIGHT CHAIN-LIKE PROTEIN	coord: 69..192

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy5G103740	Chy5G103740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy5G103740.1.exon1	Chy5G103740.1.exon1	exon
Chy5G103740.1.exon2	Chy5G103740.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy5G103740.1.cds1	Chy5G103740.1.cds1	CDS
Chy5G103740.1.cds2	Chy5G103740.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy5G103740.1	Chy5G103740.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0007017	microtubule-based process
cellular_component	GO:0030286	dynein complex
cellular_component	GO:0005737	cytoplasm
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005874	microtubule
molecular_function	GO:0045505	dynein intermediate chain binding
molecular_function	GO:0051959	dynein light intermediate chain binding