Chy4G079740.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy4G079740.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH04: 19071347 .. 19071759 (+)
Sequence length	390
RNA-Seq Expression	Chy4G079740.1
Synteny	Chy4G079740.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGGATCTCTCAAAAGGAAGTGTCTGAAAGAGAAGGGCAGAATCATCCATACCTCTTTCAGCCCTTGTTCATTGAGGCGGTTAGGAGCAAGACAACGAGTTGGATCGGACAGCTCACTATCAGAGTTGGGCCTAGTAAGGATAGGTTTGAATTGCAGGTCTCGGCCCTCGGGTTTCGGAAGAAGAAAGAGAAAGCCCTTGTTCATTGAGGCGGGCAGACAGGGAGAAGAAGGGAATGGGGCGTGGAAAGGCCACTAAAGCGAGAGGTTCAAATCCTTCCGTCCCAGTCTTCGATGAGAGATGGGAGCTTCTCGTCATTCTTGACGAAGAATGCAGAATGAACTCAATCGGTACTCCACCCAGGAGCTCATTCAAACTCCCCAACCAAGGCGCGATAAGCTGCTCGACTTAG

mRNA sequence

ATGGGGATCTCTCAAAAGGAAGTGTCTGAAAGAGAAGGGCAGAATCATCCATACCTCTTTCAGCCCTTGTTCATTGAGGCGGTTAGGAGCAAGACAACGAGTTGGATCGGACAGCTCACTATCAGAGTTGGGCCTAGTCTCGGCCCTCGGGTTTCGGAAGAAGAAAGAGAAAGCCCTTGTTCATTGAGGCGGGCAGACAGGGAGAAGAAGGGAATGGGGCGTGGAAAGGCCACTAAAGCGAGAGGTTCAAATCCTTCCGTCCCAGTCTTCGATGAGAGATGGGAGCTTCTCGTCATTCTTGACGAAGAATGCAGAATGAACTCAATCGGTACTCCACCCAGGAGCTCATTCAAACTCCCCAACCAAGGCGCGATAAGCTGCTCGACTTAG

Coding sequence (CDS)

ATGGGGATCTCTCAAAAGGAAGTGTCTGAAAGAGAAGGGCAGAATCATCCATACCTCTTTCAGCCCTTGTTCATTGAGGCGGTTAGGAGCAAGACAACGAGTTGGATCGGACAGCTCACTATCAGAGTTGGGCCTAGTCTCGGCCCTCGGGTTTCGGAAGAAGAAAGAGAAAGCCCTTGTTCATTGAGGCGGGCAGACAGGGAGAAGAAGGGAATGGGGCGTGGAAAGGCCACTAAAGCGAGAGGTTCAAATCCTTCCGTCCCAGTCTTCGATGAGAGATGGGAGCTTCTCGTCATTCTTGACGAAGAATGCAGAATGAACTCAATCGGTACTCCACCCAGGAGCTCATTCAAACTCCCCAACCAAGGCGCGATAAGCTGCTCGACTTAG

Protein sequence

MGISQKEVSEREGQNHPYLFQPLFIEAVRSKTTSWIGQLTIRVGPSLGPRVSEEERESPCSLRRADREKKGMGRGKATKARGSNPSVPVFDERWELLVILDEECRMNSIGTPPRSSFKLPNQGAISCST*

Homology

The following BLAST results are available for this feature:

BLAST of Chy4G079740.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G079740.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G079740.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G079740.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..86
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 49..75

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy4G079740	Chy4G079740	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy4G079740.1.exon1	Chy4G079740.1.exon1	exon
Chy4G079740.1.exon2	Chy4G079740.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy4G079740.1.cds1	Chy4G079740.1.cds1	CDS
Chy4G079740.1.cds2	Chy4G079740.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy4G079740.1	Chy4G079740.1-protein	polypeptide