Chy4G077900.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy4G077900.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Retrotransposon protein
Location	chrH04: 16062890 .. 16063404 (-)
Sequence length	465
RNA-Seq Expression	Chy4G077900.1
Synteny	Chy4G077900.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTGTTTGGGAAAGATCGTGCTACGGGACACGTGTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATGTATAATCAGGGACTAGATATGTCGCCTAACGACATAATGGGCACACGACCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

mRNA sequence

GTGTTTGGGAAAGATCGTGCTACGGGACACGTGTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

Coding sequence (CDS)

GTGTTTGGGAAAGATCGTGCTACGGGACACGTGTAGAGTCATTTGTCGATGTGGGGTCGAATGTGCCTGTAGGGTACAAAAAAATTTCCGCTGACAATGGAAATGATTCGGAGATCCCTATGATCTGGTCGCTCAAGTGAGAGTATGAATGCTTAAAGTGAAAGCAAGACGAAGCAGAAAGGCCAGACGGCTGAAACTGTGAAAATCATTCGCAATGCAATGGAATATGAGAATGACCATTTGAAGGCCATTGTAGAATGGCCGAATGTACAATGTCAAGAAGAGAAGGCCTCCTGTGCAGAATTTGTGAAACAGTTGTAGGGAATCAATGAACTAAGCACCCGCGATAGGGTACACCTTATGCGGATAATAATGTGCAATGTCAATGACATGAAATCATTCTTGGAGATACCCGACGAGCTTAAATTAGACTACTACACGGTCATGCTCGAAGATAATGCTTAA

Protein sequence

VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRSL*SGRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA*

Homology

[Close]

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL
Match: A0A0A0LEB9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.9e-26
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 49  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*G 108
           MNA S SK K+ GQTAET+KIIRN M+Y ND  +AIVEWP+VQ Q + A  AE +KQL  
Sbjct: 1   MNASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQA 60

Query: 109 INELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 155
           I ELST DR  LM  +MCNV+DMK+  EI +ELKLDY TVMLEDNA
Sbjct: 61  IPELSTHDRRCLMWTLMCNVHDMKALWEISNELKLDYCTVMLEDNA 106

[Close]

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL
Match: A0A5A7V469 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold420G00340 PE=4 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.9e-25
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 44  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFV 103
           RS+E     S SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V
Sbjct: 54  RSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVV 113

Query: 104 KQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 155
           +QL  I ELS  DRV  M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 114 RQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

[Close]

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL
Match: A0A5A7VIQ2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold90G00470 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 43  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEF 102
           G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE 
Sbjct: 44  GHLSEGRNASSRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEV 103

Query: 103 VKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 155
           + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 104 MSQLQGIPKLSTRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

[Close]

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL
Match: A0A5D3C5I7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold606G00500 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.4e-25
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 43  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEF 102
           G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE 
Sbjct: 44  GHLSEGRNASSRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEV 103

Query: 103 VKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 155
           + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 104 MSQLQGIPKLSTRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

[Close]

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL
Match: A0A5D3D513 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold119G001660 PE=4 SV=1)

HSP 1 Score: 117.1 bits (292), Expect = 6.6e-23
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 1   VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESM 60
           VFGKDRATG     L   G+  L GT    LT+  IR S           + + R SE  
Sbjct: 134 VFGKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRIRTSSLCMSPDELMRIRNARVSEGR 193

Query: 61  NA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GI 120
              S SK K+KGQ A++  I+R A+EY N+ L  I +W  +Q Q+   +  E V+QL  I
Sbjct: 194 YVSSGSKRKRKGQAADSGDILRTAIEYGNEQLNRIAKWLVLQRQDASQTRQEVVRQLDAI 253

Query: 121 NELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 154
            EL+  DR  LMRI+M NV+DMK+FLE+PD +K  Y +++L++N
Sbjct: 254 PELTLMDRCRLMRILMHNVDDMKAFLEVPDNMKYPYCSIILQEN 297

[Close]

BLAST of Chy4G077900.1 vs. NCBI nr
Match: KGN58436.1 (hypothetical protein Csa_000900 [Cucumis sativus])

HSP 1 Score: 126 bits (317), Expect = 1.82e-34
Identity = 69/106 (65.09%), Postives = 80/106 (75.47%), Query Frame = 0


Query: 49  MNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*G 108
           MNA S SK K+ GQTAET+KIIRN M+Y ND  +AIVEWP+VQ Q + A  AE +KQL  
Sbjct: 1   MNASSRSKRKRGGQTAETMKIIRNTMKYVNDQSEAIVEWPSVQHQSKDAFYAEVMKQLQA 60

Query: 109 INELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 154
           I ELST DR  LM  +MCNV+DMK+  EI +ELKLDY TVMLEDNA
Sbjct: 61  IPELSTHDRRCLMWTLMCNVHDMKALWEISNELKLDYCTVMLEDNA 106

[Close]

BLAST of Chy4G077900.1 vs. NCBI nr
Match: KAA0060529.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 124 bits (312), Expect = 5.76e-33
Identity = 66/111 (59.46%), Postives = 80/111 (72.07%), Query Frame = 0


Query: 44  RSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFV 103
           RS+E     S SK KQ GQ  ET++IIRN ME+ ND LKAIVEW NVQ Q+  A   E V
Sbjct: 54  RSTEGRTGSSGSKRKQGGQAVETMEIIRNVMEHSNDRLKAIVEWLNVQRQDASARLVEVV 113

Query: 104 KQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 154
           +QL  I ELS  DRV  M+I+MCNV+DMK+FL+I DELKLDY T++ +DNA
Sbjct: 114 RQLQRIPELSRYDRVRSMQILMCNVDDMKAFLDILDELKLDYCTIIFQDNA 164

[Close]

BLAST of Chy4G077900.1 vs. NCBI nr
Match: KAA0065601.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 1.79e-32
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 43  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEF 102
           G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE 
Sbjct: 44  GHLSEGRNASSRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEV 103

Query: 103 VKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 154
           + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 104 MSQLQGIPKLSTRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

[Close]

BLAST of Chy4G077900.1 vs. NCBI nr
Match: TYK07171.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 123 bits (308), Expect = 1.79e-32
Identity = 70/112 (62.50%), Postives = 81/112 (72.32%), Query Frame = 0


Query: 43  GRSSESMNA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEF 102
           G  SE  NA S SK K   QT ETVKII NA+EY N  LKAI +  NVQ Q + AS AE 
Sbjct: 44  GHLSEGRNASSRSKRKWGDQTTETVKIICNAIEYTNGQLKAIAKRSNVQRQADDASRAEV 103

Query: 103 VKQL*GINELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDNA 154
           + QL GI +LSTRDRV L+ IIM NV++M++FLE+PDELKLDY T MLEDNA
Sbjct: 104 MSQLQGIPKLSTRDRVRLLWIIMHNVHNMRAFLEVPDELKLDYCTTMLEDNA 155

[Close]

BLAST of Chy4G077900.1 vs. NCBI nr
Match: TYK18628.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 117 bits (292), Expect = 1.56e-28
Identity = 69/164 (42.07%), Postives = 95/164 (57.93%), Query Frame = 0


Query: 1   VFGKDRATGHV*SHLSMWGRMCL*GTKKFPLTMEMIRRS-----------L*SGRSSESM 60
           VFGKDRATG     L   G+  L GT    LT+  IR S           + + R SE  
Sbjct: 134 VFGKDRATGGRPRVLQTLGQTILLGTSHLSLTLRRIRTSSLCMSPDELMRIRNARVSEGR 193

Query: 61  NA*SESKTKQKGQTAETVKIIRNAMEYENDHLKAIVEWPNVQCQEEKASCAEFVKQL*GI 120
              S SK K+KGQ A++  I+R A+EY N+ L  I +W  +Q Q+   +  E V+QL  I
Sbjct: 194 YVSSGSKRKRKGQAADSGDILRTAIEYGNEQLNRIAKWLVLQRQDASQTRQEVVRQLDAI 253

Query: 121 NELSTRDRVHLMRIIMCNVNDMKSFLEIPDELKLDYYTVMLEDN 153
            EL+  DR  LMRI+M NV+DMK+FLE+PD +K  Y +++L++N
Sbjct: 254 PELTLMDRCRLMRILMHNVDDMKAFLEVPDNMKYPYCSIILQEN 297

The following BLAST results are available for this feature:

BLAST of Chy4G077900.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy4G077900.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEB9	4.9e-26	65.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G643760 PE=4 SV=1	[more]
A0A5A7V469	1.9e-25	59.46	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VIQ2	5.4e-25	62.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3C5I7	5.4e-25	62.50	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3D513	6.6e-23	42.07	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of Chy4G077900.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58436.1	1.82e-34	65.09	hypothetical protein Csa_000900 [Cucumis sativus]	[more]
KAA0060529.1	5.76e-33	59.46	retrotransposon protein [Cucumis melo var. makuwa] >TYK00769.1 retrotransposon p...	[more]
KAA0065601.1	1.79e-32	62.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK07171.1	1.79e-32	62.50	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK18628.1	1.56e-28	42.07	retrotransposon protein [Cucumis melo var. makuwa]	[more]

BLAST of Chy4G077900.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 38..60

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy4G077900	Chy4G077900	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy4G077900.1.exon2	Chy4G077900.1.exon2	exon
Chy4G077900.1.exon1	Chy4G077900.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy4G077900.1.cds2	Chy4G077900.1.cds2	CDS
Chy4G077900.1.cds1	Chy4G077900.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy4G077900.1	Chy4G077900.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane