Chy3G058120.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy3G058120.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	ribosome maturation protein SBDS
Location	chrH03: 11524681 .. 11526012 (+)
Sequence length	669
RNA-Seq Expression	Chy3G058120.1
Synteny	Chy3G058120.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTAGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGTAAGCTCCCTTAAACTCTATCGTTTCATCTCTCTCAATTATCGGATTTTCTCTAGTTGTTTGGTGGGTTATTATGATTGAGAAGATGGTATAGCTTTGATGTTATAATAGGATAGAAATTGCAACCAATTTATGATTTATTTGTTAAATGGAGGATCCCCTTGGCTAACGGATTAAGAAAAGGAAAGCATCTTCTAATTGCTAGTCACAACATTAGTTGGAGTGGTAAATTGTTGAAGTACATGGATATGAGTATAATCCATCAGATCAGTTTTAGATTTTAGGGCTCGATTTGCAATGTGTACTATTTGACATACTTTGTACTGGTTTACTTTATATTTTATTATTTGTGTTGTATAGTTAAATTTGACCAATATGAACTTCAAAATGTATGTTGTAACAGGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAACATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGGTTGGTGGAATTCCTGAATGAGTTTTCTTTTTTTTTTTAATGTTTTTATATCACATCTAGTAATTTATGGATGATTCTTCTTTTTTTTTTTGGTGTGTGCATTTGTGTTCATTTTTTTAACTGACGAGATTGTCAACTTCCTGGTACTAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGACTAATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGTAGGTTGATACTTTTTGCTGAATGTGAGATGAACATTCTTCTGCTTTGGATTTTTATAACTATTAATTCAAGGCCACAATTTTCGGCTGATGTTTTTTATGATATGCAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTCCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACATAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCGTTTCCGATGACCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCCGTGTTTCTTCACTGCAATTGTTGCT

mRNA sequence

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTAGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAACATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGACTAATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTCCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACATAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCGTTTCCGATGACCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCCGTGTTTCTTCACTGCAATTGTTGCT

Coding sequence (CDS)

ATGTCCCGATCGCTGGTGCAGCCGATCGGGCAGAAGCGGCTGACCAACGTCGCCGTAGTTCGTTTGAAGAAACATGGTCTTCGCTTCGAGATTGCCTGTTACAAGAACAAGGTCCTTTCATGGCGCTCTGGCGTGGAGAGAGATTTGGATGAGGTCTTGCAATCGCAAATTGTTTATTCGAATGTTTCAAAAGGAGTTCTTGCAAAAACAAAACATTTGAAAGCAGCTTTTGGTACAGATGATCAGACGGAAATTTGTTTGAAGATTCTTAAAGAAGGGGAACTTCAAGTTGCAGGGAAGGAGAGGGAGGCTCAATTATCCAATCAGTTTCGTGATATTGCAACTATTGTTATGCAGAAGACCTTCAATCCTGAAACTAAACGCCCTTACACCATTAGCATGATTGAACGACTAATGCGTGAAATTCATTTTGCTGTTGATCCAAATCACAGCTCAAAGAAACAGGCACTAGAGGTTATTCATGAGCTCCAGAAACACTTCCCAATTAAACGGTCACCTATGAGGTTACGATATATCGTACCTGAACATAACGTTCCATCTCTCCTTGATAAGTTAAATGCTTGGAGTGCTAGTATCGTTTCCGATGACCAGTCTGGAAATCAGCAACGAAGCATTGTGAGTCCGTGTTTCTTCACTGCAATTGTTGCT

Protein sequence

MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIVSPCFFTAIVA

Homology

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BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot
Match: P70122 (Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4)

HSP 1 Score: 235.3 bits (599), Expect = 6.5e-61
Identity = 123/210 (58.57%), Postives = 156/210 (74.29%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK + L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEH 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIV 214
               L +KL      + S+D S  QQ  IV
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIV 209

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BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot
Match: Q5RK30 (Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1)

HSP 1 Score: 234.6 bits (597), Expect = 1.1e-60
Identity = 122/210 (58.10%), Postives = 156/210 (74.29%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRGGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK + L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEH 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L++   I+R+ MRLR+++P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFLLPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIV 214
               L +KL      + S+D S  QQ  IV
Sbjct: 182 EGKKLKEKLKPLMKVVESEDYS--QQLEIV 209

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BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot
Match: Q3SWZ6 (Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1)

HSP 1 Score: 234.2 bits (596), Expect = 1.4e-60
Identity = 123/210 (58.57%), Postives = 155/210 (73.81%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK + L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEH 183
           PETKRPYT+ +IER M++IH++V PN S+K+QALEVI +L++   I+R+ MRLR+I+P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKPNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIV 214
               L +KL      I S+D    QQ  IV
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIV 209

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BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot
Match: Q9Y3A5 (Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 122/210 (58.10%), Postives = 154/210 (73.33%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK + L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEH 183
           PETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIV 214
               L +KL      I S+D    QQ  IV
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIV 209

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BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot
Match: Q5RAZ2 (Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 1.2e-59
Identity = 122/210 (58.10%), Postives = 154/210 (73.33%), Query Frame = 0


Query: 4   SLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYSNVS 63
           S+  P  Q RLTNVAVVR+K+ G RFEIACYKNKV+ WRSGVE+DLDEVLQ+  V+ NVS
Sbjct: 2   SIFTPTNQIRLTNVAVVRMKRAGKRFEIACYKNKVVGWRSGVEKDLDEVLQTHSVFVNVS 61

Query: 64  KGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQKTFN 123
           KG +AK + L +AFGTDDQTEIC +IL +GE+QV+ KER  QL   FRDIATIV  K  N
Sbjct: 62  KGQVAKKEDLISAFGTDDQTEICKQILTKGEVQVSDKERHTQLEQMFRDIATIVADKCVN 121

Query: 124 PETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIVPEH 183
           PETKRPYT+ +IER M++IH++V  N S+K+QALEVI +L++   I+R+ MRLR+I+P +
Sbjct: 122 PETKRPYTVILIERAMKDIHYSVKTNKSTKQQALEVIKQLKEKMKIERAHMRLRFILPVN 181

Query: 184 NVPSLLDKLNAWSASIVSDDQSGNQQRSIV 214
               L +KL      I S+D    QQ  IV
Sbjct: 182 EGKKLKEKLKPLIKVIESEDY--GQQLEIV 209

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BLAST of Chy3G058120.1 vs. ExPASy TrEMBL
Match: A0A0A0KIY6 (C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G397690 PE=3 SV=1)

HSP 1 Score: 412.9 bits (1060), Expect = 8.4e-112
Identity = 211/221 (95.48%), Postives = 214/221 (96.83%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 219
           PE NVPSLLDKLNAWSASIVSDDQSGNQQRSI+    P F+
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. ExPASy TrEMBL
Match: A0A5A7UXA4 (Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00400 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 209/221 (94.57%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 219
           PE NVPSLLDKLNAWSASIVS+DQSGNQQRSI+    P F+
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. ExPASy TrEMBL
Match: A0A1S3CRW0 (ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV=1)

HSP 1 Score: 407.5 bits (1046), Expect = 3.5e-110
Identity = 209/221 (94.57%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 219
           PE NVPSLLDKLNAWSASIVS+DQSGNQQRSI+    P F+
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. ExPASy TrEMBL
Match: A0A6J1IK36 (ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.4e-106
Identity = 199/221 (90.05%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 219
           PE N PSLLDKLN+WSASI+S+DQSGNQQRS++    P F+
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. ExPASy TrEMBL
Match: A0A6J1F6G6 (ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 PE=3 SV=1)

HSP 1 Score: 394.8 bits (1013), Expect = 2.4e-106
Identity = 199/221 (90.05%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 219
           PE N PSLLDKLN+WSASI+S+DQSGNQQRS++    P F+
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. NCBI nr
Match: XP_004146781.1 (ribosome maturation protein SBDS [Cucumis sativus] >KGN47741.1 hypothetical protein Csa_004177 [Cucumis sativus])

HSP 1 Score: 412 bits (1059), Expect = 1.74e-142
Identity = 211/221 (95.48%), Postives = 214/221 (96.83%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKELKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMR+IHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMRDIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 218
           PE NVPSLLDKLNAWSASIVSDDQSGNQQRSI+    P F+
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSDDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. NCBI nr
Match: XP_008466694.1 (PREDICTED: ribosome maturation protein SBDS [Cucumis melo] >KAA0059838.1 ribosome maturation protein SBDS [Cucumis melo var. makuwa] >TYK24793.1 ribosome maturation protein SBDS [Cucumis melo var. makuwa])

HSP 1 Score: 407 bits (1045), Expect = 2.34e-140
Identity = 209/221 (94.57%), Postives = 213/221 (96.38%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMRLRYIV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRLRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 218
           PE NVPSLLDKLNAWSASIVS+DQSGNQQRSI+    P F+
Sbjct: 181 PEQNVPSLLDKLNAWSASIVSNDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. NCBI nr
Match: XP_038886377.1 (ribosome maturation protein SBDS [Benincasa hispida])

HSP 1 Score: 400 bits (1029), Expect = 6.36e-138
Identity = 204/221 (92.31%), Postives = 211/221 (95.48%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAF TDDQTEICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQTEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RYIV
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYIV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 218
           PE N PSLLDKLNAWSASI+S+DQSGNQQRSI+    P F+
Sbjct: 181 PEQNFPSLLDKLNAWSASIISNDQSGNQQRSIICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. NCBI nr
Match: XP_022975304.1 (ribosome maturation protein SBDS [Cucurbita maxima])

HSP 1 Score: 394 bits (1012), Expect = 2.53e-135
Identity = 199/221 (90.05%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 218
           PE N PSLLDKLN+WSASI+S+DQSGNQQRS++    P F+
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. NCBI nr
Match: XP_022936066.1 (ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome maturation protein SBDS, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 394 bits (1012), Expect = 2.53e-135
Identity = 199/221 (90.05%), Postives = 209/221 (94.57%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MSRSLVQPIGQKRLTNVAVVRLK+HGLRFEIACYKNKVLSWRSGVE+DLDEVLQSQIVYS
Sbjct: 1   MSRSLVQPIGQKRLTNVAVVRLKRHGLRFEIACYKNKVLSWRSGVEKDLDEVLQSQIVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAKTK LKAAF TDDQ EICLKILKEGELQ+AGKEREAQLSNQFRDIATIVMQK
Sbjct: 61  NVSKGVLAKTKDLKAAFDTDDQAEICLKILKEGELQIAGKEREAQLSNQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQK FPIKRSPMR+RY V
Sbjct: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKQFPIKRSPMRIRYTV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSIV---SPCFF 218
           PE N PSLLDKLN+WSASI+S+DQSGNQQRS++    P F+
Sbjct: 181 PEQNFPSLLDKLNSWSASIISNDQSGNQQRSVICELDPSFY 221

[Close]

BLAST of Chy3G058120.1 vs. TAIR 10
Match: AT1G43860.1 (sequence-specific DNA binding transcription factors )

HSP 1 Score: 327.0 bits (837), Expect = 1.2e-89
Identity = 161/212 (75.94%), Postives = 185/212 (87.26%), Query Frame = 0


Query: 1   MSRSLVQPIGQKRLTNVAVVRLKKHGLRFEIACYKNKVLSWRSGVERDLDEVLQSQIVYS 60
           MS++LVQP+GQKRLTNVAVVRLKK G RFEIACYKNKVLSWRSGVE+D+DEVLQS  VYS
Sbjct: 1   MSKTLVQPVGQKRLTNVAVVRLKKQGNRFEIACYKNKVLSWRSGVEKDIDEVLQSHTVYS 60

Query: 61  NVSKGVLAKTKHLKAAFGTDDQTEICLKILKEGELQVAGKEREAQLSNQFRDIATIVMQK 120
           NVSKGVLAK+K L  +FG+DD T+IC+ IL++GELQVAGKERE+Q S+QFRDIATIVMQK
Sbjct: 61  NVSKGVLAKSKDLMKSFGSDDHTKICIDILEKGELQVAGKERESQFSSQFRDIATIVMQK 120

Query: 121 TFNPETKRPYTISMIERLMREIHFAVDPNHSSKKQALEVIHELQKHFPIKRSPMRLRYIV 180
           T NPET+RPYTISM+ERLM EIHFAVDP+ +SKKQAL+VI ELQKHFPIKRSPMRLR  V
Sbjct: 121 TINPETQRPYTISMVERLMHEIHFAVDPHSNSKKQALDVIRELQKHFPIKRSPMRLRLTV 180

Query: 181 PEHNVPSLLDKLNAWSASIVSDDQSGNQQRSI 213
           P  N PSLL+KL  W  S+VS D+SG Q  ++
Sbjct: 181 PVQNFPSLLEKLKEWDGSVVSKDESGTQMSTV 212

The following BLAST results are available for this feature:

BLAST of Chy3G058120.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P70122	6.5e-61	58.57	Ribosome maturation protein SBDS OS=Mus musculus OX=10090 GN=Sbds PE=1 SV=4	[more]
Q5RK30	1.1e-60	58.10	Ribosome maturation protein SBDS OS=Rattus norvegicus OX=10116 GN=Sbds PE=2 SV=1	[more]
Q3SWZ6	1.4e-60	58.57	Ribosome maturation protein SBDS OS=Bos taurus OX=9913 GN=SBDS PE=2 SV=1	[more]
Q9Y3A5	1.2e-59	58.10	Ribosome maturation protein SBDS OS=Homo sapiens OX=9606 GN=SBDS PE=1 SV=4	[more]
Q5RAZ2	1.2e-59	58.10	Ribosome maturation protein SBDS OS=Pongo abelii OX=9601 GN=SBDS PE=2 SV=1	[more]

BLAST of Chy3G058120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KIY6	8.4e-112	95.48	C2H2-type domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G397690 P...	[more]
A0A5A7UXA4	3.5e-110	94.57	Ribosome maturation protein SBDS OS=Cucumis melo var. makuwa OX=1194695 GN=E5676...	[more]
A0A1S3CRW0	3.5e-110	94.57	ribosome maturation protein SBDS OS=Cucumis melo OX=3656 GN=LOC103504043 PE=3 SV...	[more]
A0A6J1IK36	2.4e-106	90.05	ribosome maturation protein SBDS OS=Cucurbita maxima OX=3661 GN=LOC111474460 PE=...	[more]
A0A6J1F6G6	2.4e-106	90.05	ribosome maturation protein SBDS OS=Cucurbita moschata OX=3662 GN=LOC111442780 P...	[more]

BLAST of Chy3G058120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004146781.1	1.74e-142	95.48	ribosome maturation protein SBDS [Cucumis sativus] >KGN47741.1 hypothetical prot...	[more]
XP_008466694.1	2.34e-140	94.57	PREDICTED: ribosome maturation protein SBDS [Cucumis melo] >KAA0059838.1 ribosom...	[more]
XP_038886377.1	6.36e-138	92.31	ribosome maturation protein SBDS [Benincasa hispida]	[more]
XP_022975304.1	2.53e-135	90.05	ribosome maturation protein SBDS [Cucurbita maxima]	[more]
XP_022936066.1	2.53e-135	90.05	ribosome maturation protein SBDS [Cucurbita moschata] >KAG7025021.1 Ribosome mat...	[more]

BLAST of Chy3G058120.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G43860.1	1.2e-89	75.94	sequence-specific DNA binding transcription factors	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR018978	Ribosome maturation protein Sdo1/SBDS, C-terminal	PFAM	PF09377	SBDS_C	coord: 110..221 e-value: 9.1E-27 score: 93.3
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	GENE3D	3.30.1250.10		coord: 1..96 e-value: 4.1E-39 score: 134.5
IPR036786	Ribosome maturation protein SBDS, N-terminal domain superfamily	SUPERFAMILY	89895	FYSH domain	coord: 13..96
IPR019783	Ribosome maturation protein Sdo1/SBDS, N-terminal	PFAM	PF01172	SBDS	coord: 16..102 e-value: 6.8E-29 score: 99.8
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	GENE3D	1.10.10.900		coord: 100..172 e-value: 1.4E-30 score: 107.1
IPR037188	Ribosome maturation protein Sdo1/SBDS, central domain superfamily	SUPERFAMILY	109728	Hypothetical protein AF0491, middle domain	coord: 98..171
IPR002140	Ribosome maturation protein Sdo1/SBDS	TIGRFAM	TIGR00291	TIGR00291	coord: 13..199 e-value: 1.3E-48 score: 163.4
IPR039100	Ribosome maturation protein Sdo1/SBDS-like	PANTHER	PTHR10927	RIBOSOME MATURATION PROTEIN SBDS	coord: 1..212
None	No IPR available	PANTHER	PTHR10927:SF3	BNAANNG06530D PROTEIN	coord: 1..212
IPR018023	Ribosome maturation protein SBDS, conserved site	PROSITE	PS01267	UPF0023	coord: 46..65

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy3G058120	Chy3G058120	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G058120.1.exon1	Chy3G058120.1.exon1	exon
Chy3G058120.1.exon2	Chy3G058120.1.exon2	exon
Chy3G058120.1.exon3	Chy3G058120.1.exon3	exon
Chy3G058120.1.exon4	Chy3G058120.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy3G058120.1.cds1	Chy3G058120.1.cds1	CDS
Chy3G058120.1.cds2	Chy3G058120.1.cds2	CDS
Chy3G058120.1.cds3	Chy3G058120.1.cds3	CDS
Chy3G058120.1.cds4	Chy3G058120.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy3G058120.1	Chy3G058120.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042256	mature ribosome assembly
biological_process	GO:0042254	ribosome biogenesis
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding