Chy2G041380.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy2G041380.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Flocculation protein FLO11-like
Location	chrH02: 21288538 .. 21289304 (-)
Sequence length	672
RNA-Seq Expression	Chy2G041380.1
Synteny	Chy2G041380.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATTTCGGCTTGCAATCCTTTGAGAAGACCGCACAGAATTAGTGAGATTCCAAAATCTTCATCCTTTGAGTCTTCTCACTCTTTGCATGAAGCTTCTTCGGTTATCACTTCTCGTCCTCCTAGCTCTCCGAGCAAGGTATCAGGCAAGGGTACTTTTCCTATCAAAGCTTTTGTGGCTTCTCGTGCATCATCATCTCGACGCTCTAGATTTAATGTTTCTGACTCTGCATCTGTTGAGACAATTGTTGTTGATTCCGACTCCACTAGTGAAGACAATGTGGTTCTCTCTGATGTTTTGAAGAGGAAAGCATCTAACAATGTTTCTCTTCCCAAGAAGCCAAATTCTATAAAAGTTAATAAATCTTTTGTCTCTCATCCCTCCAATGCTGATGATCTGTATGAAGCCTTGTTTGGAACTCATTCTCCACCACGCTAGACGTCATCCAGTGTCTAGTTTTGAATACTTCTGCTCCTGTCTCATCCAATGCTCAGAAATCTATTGATACCACTATTGAGGACTTGTTCACAAAATTTGCTTGGGACCCTAAGGTTCTAGACTCTGGTGGTCACCCACACTCATCTTCTGCTAACACCGCTACTGAATCGGCTCCACATCCTGGTTTCACATCTACCTCTATACTTAATCCTGCACATATTAGTGATGAGCACAACAATCCGGGAACTAAACAAATTGCTACCAAGTTAGTTCTTGGTTCCTCCCCTGGTCCTTTAAAGTTTAAGGCTCGTGTCCCTTTTTGTGGGTAA

mRNA sequence

ATGATTTCGGCTTGCAATCCTTTGAGAAGACCGCACAGAATTAGTGAGATTCCAAAATCTTCATCCTTTGAGTCTTCTCACTCTTTGCATGAAGCTTCTTCGGTTATCACTTCTCGTCCTCCTAGCTCTCCGAGCAAGGTATCAGGCAAGGGTACTTTTCCTATCAAAGCTTTTGTGGCTTCTCGTGCATCATCATCTCGACGCTCTAGATTTAATGTTTCTGACTCTGCATCTGTTGAGACAATTGTTGTTGATTCCGACTCCACTAGTGAAGACAATGTGGTTCTCTCTGATGTTTTGAAGAGGAAAGCATCTAACAATGTTTCTCTTCCCAAGAAGCCAAATTCTATAAAATGTCTAGTTTTGAATACTTCTGCTCCTGTCTCATCCAATGCTCAGAAATCTATTGATACCACTATTGAGGACTTGTTCACAAAATTTGCTTGGGACCCTAAGGTTCTAGACTCTGGTGGTCACCCACACTCATCTTCTGCTAACACCGCTACTGAATCGGCTCCACATCCTGGTTTCACATCTACCTCTATACTTAATCCTGCACATATTAGTGATGAGCACAACAATCCGGGAACTAAACAAATTGCTACCAAGTTAGTTCTTGGTTCCTCCCCTGGTCCTTTAAAGTTTAAGGCTCGTGTCCCTTTTTGTGGGTAA

Coding sequence (CDS)

ATGATTTCGGCTTGCAATCCTTTGAGAAGACCGCACAGAATTAGTGAGATTCCAAAATCTTCATCCTTTGAGTCTTCTCACTCTTTGCATGAAGCTTCTTCGGTTATCACTTCTCGTCCTCCTAGCTCTCCGAGCAAGGTATCAGGCAAGGGTACTTTTCCTATCAAAGCTTTTGTGGCTTCTCGTGCATCATCATCTCGACGCTCTAGATTTAATGTTTCTGACTCTGCATCTGTTGAGACAATTGTTGTTGATTCCGACTCCACTAGTGAAGACAATGTGGTTCTCTCTGATGTTTTGAAGAGGAAAGCATCTAACAATGTTTCTCTTCCCAAGAAGCCAAATTCTATAAAATGTCTAGTTTTGAATACTTCTGCTCCTGTCTCATCCAATGCTCAGAAATCTATTGATACCACTATTGAGGACTTGTTCACAAAATTTGCTTGGGACCCTAAGGTTCTAGACTCTGGTGGTCACCCACACTCATCTTCTGCTAACACCGCTACTGAATCGGCTCCACATCCTGGTTTCACATCTACCTCTATACTTAATCCTGCACATATTAGTGATGAGCACAACAATCCGGGAACTAAACAAATTGCTACCAAGTTAGTTCTTGGTTCCTCCCCTGGTCCTTTAAAGTTTAAGGCTCGTGTCCCTTTTTGTGGGTAA

Protein sequence

MISACNPLRRPHRISEIPKSSSFESSHSLHEASSVITSRPPSSPSKVSGKGTFPIKAFVASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSDVLKRKASNNVSLPKKPNSIKCLVLNTSAPVSSNAQKSIDTTIEDLFTKFAWDPKVLDSGGHPHSSSANTATESAPHPGFTSTSILNPAHISDEHNNPGTKQIATKLVLGSSPGPLKFKARVPFCG*

Homology

[Close]

BLAST of Chy2G041380.1 vs. ExPASy TrEMBL
Match: A0A0A0K752 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1)

HSP 1 Score: 92.4 bits (228), Expect = 2.5e-15
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 121 VLNTSAPVSSNAQKSIDTTIEDLFTKFAWDPKVLDSGGHPHSSSANTATESAPHPGFTST 180
           V  T A  SS+A++S DT I++LF +FA DP+VL    H HSS A++A ESAPHP FTST
Sbjct: 7   VTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTST 66

Query: 181 SILNPAHISDEHNNPGTKQIATKLVLGSSPGPLKFKARV 220
           SI  P  + DE+   G K  A +LV   S GPLKF+A V
Sbjct: 67  SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHV 105

[Close]

BLAST of Chy2G041380.1 vs. ExPASy TrEMBL
Match: A0A5A7UBA4 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold60G00390 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 76/215 (35.35%), Postives = 100/215 (46.51%), Query Frame = 0


Query: 1   MISACNPLRRPHRISEIP-KSSSFESSHSLH-EASSVITSRPPSSPSKVSGKGTFPIKAF 60
           MI A +P  R    SEIP  SSS ESS SLH E+ +        +P K +    F +   
Sbjct: 19  MILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTIYTNFHVIPP 78

Query: 61  VASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSDVLKRKAS--------NNVSL 120
             S  SS R+ R  + DS S+ETIVVDS+S  EDNVVLS VLKRKA+        +    
Sbjct: 79  SFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPER 138

Query: 121 PKKPNSIKCLVLNT------SAPVSSNAQKS------------------IDTTIEDLFTK 180
           PKKP + +   +          P+SS+   S                   D TI++LF K
Sbjct: 139 PKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLSSSKIPPTTDETIDNLFAK 198

Query: 181 FAWDPKVLDSGGHPHSSSANTATESAPHPGFTSTS 182
           F   P + DS    HS+      E AP   FT+++
Sbjct: 199 FFHAPGLHDSCVPHHSTQNEPIFELAPPSPFTTSN 233

[Close]

BLAST of Chy2G041380.1 vs. ExPASy TrEMBL
Match: A0A5D3BFA1 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold234G00410 PE=4 SV=1)

HSP 1 Score: 68.9 bits (167), Expect = 3.0e-08
Identity = 76/215 (35.35%), Postives = 100/215 (46.51%), Query Frame = 0


Query: 1   MISACNPLRRPHRISEIP-KSSSFESSHSLH-EASSVITSRPPSSPSKVSGKGTFPIKAF 60
           MI A +P  R    SEIP  SSS ESS SLH E+ +        +P K +    F +   
Sbjct: 19  MILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTIYTNFHVIPP 78

Query: 61  VASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSDVLKRKAS--------NNVSL 120
             S  SS R+ R  + DS S+ETIVVDS+S  EDNVVLS VLKRKA+        +    
Sbjct: 79  SFSCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDTPER 138

Query: 121 PKKPNSIKCLVLNT------SAPVSSNAQKS------------------IDTTIEDLFTK 180
           PKKP + +   +          P+SS+   S                   D TI++LF K
Sbjct: 139 PKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLSSSKIPPTTDETIDNLFAK 198

Query: 181 FAWDPKVLDSGGHPHSSSANTATESAPHPGFTSTS 182
           F   P + DS    HS+      E AP   FT+++
Sbjct: 199 FFHAPGLHDSCVPHHSTQNEPIFELAPPSPFTTSN 233

[Close]

BLAST of Chy2G041380.1 vs. ExPASy TrEMBL
Match: A0A5A7TP88 (Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold75G001210 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 2.1e-06
Identity = 60/177 (33.90%), Postives = 78/177 (44.07%), Query Frame = 0


Query: 39  RPPSSPSKVSGKGTFPIKAFVASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSD 98
           +PP+SP K S        +F  +  S  RRS   +SD   +ET+VV+S  +++DNVVLSD
Sbjct: 11  KPPNSPLKPSTVTNTHSPSFRFANFSHQRRSSVIISDFEFIETVVVNSKLSNDDNVVLSD 70

Query: 99  VLKRKASNNVS--------LPKKPN------------------------SIKCLVLNTSA 158
           V+K K S+  S        L K P                         S  C   NTSA
Sbjct: 71  VMKWKVSDKASICKEGVSDLSKNPRVRRSSNADKLYKELFGIPPLGHKASFTCKAHNTSA 130

Query: 159 PVSSNAQKSIDTTIEDLFTKFAWDPKVLDSGGHPHSSSANTATESAPHPGFTSTSIL 184
             SS    S D TI+DLFTKF      L+S    H      +  S P P FT++  L
Sbjct: 131 SSSSKPALSNDETIKDLFTKFYHAFDRLNSNVPQHLFQNEPSLNSIPQPPFTASEAL 187

[Close]

BLAST of Chy2G041380.1 vs. NCBI nr
Match: KGN44137.1 (hypothetical protein Csa_015624 [Cucumis sativus])

HSP 1 Score: 93.6 bits (231), Expect = 1.61e-19
Identity = 52/99 (52.53%), Postives = 65/99 (65.66%), Query Frame = 0


Query: 121 VLNTSAPVSSNAQKSIDTTIEDLFTKFAWDPKVLDSGGHPHSSSANTATESAPHPGFTST 180
           V  T A  SS+A++S DT I++LF +FA DP+VL    H HSS A++A ESAPHP FTST
Sbjct: 7   VTTTFALASSHAKQSTDTMIDNLFVEFARDPEVLGYCAHLHSSFADSAIESAPHPDFTST 66

Query: 181 SILNPAHISDEHNNPGTKQIATKLVLGSSPGPLKFKARV 219
           SI  P  + DE+   G K  A +LV   S GPLKF+A V
Sbjct: 67  SIPGPPSVCDEYTASGAKPTAIELVPSFSHGPLKFQAHV 105

[Close]

BLAST of Chy2G041380.1 vs. NCBI nr
Match: TYJ97943.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.34e-10
Identity = 79/217 (36.41%), Postives = 101/217 (46.54%), Query Frame = 0


Query: 1   MISACNPLRRPHRISEIP-KSSSFESSHSLHEASSVI----TSRPPSSPSKVSGKGTFPI 60
           MI A +P  R    SEIP  SSS ESS SLH  S       TS+ P  P+  +     P 
Sbjct: 19  MILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTIYTNFHVIP- 78

Query: 61  KAFVASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSDVLKRKAS--------NN 120
            +F  S  SS R+ R  + DS S+ETIVVDS+S  EDNVVLS VLKRKA+        + 
Sbjct: 79  PSF--SCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDT 138

Query: 121 VSLPKKPNSIKCLVLNT------SAPVSSNAQKS------------------IDTTIEDL 180
              PKKP + +   +          P+SS+   S                   D TI++L
Sbjct: 139 PERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLSSSKIPPTTDETIDNL 198

[Close]

BLAST of Chy2G041380.1 vs. NCBI nr
Match: KAA0051667.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 69.7 bits (169), Expect = 9.42e-10
Identity = 79/217 (36.41%), Postives = 101/217 (46.54%), Query Frame = 0


Query: 1   MISACNPLRRPHRISEIP-KSSSFESSHSLHEASSVI----TSRPPSSPSKVSGKGTFPI 60
           MI A +P  R    SEIP  SSS ESS SLH  S       TS+ P  P+  +     P 
Sbjct: 19  MILARHPYHRLRHASEIPLPSSSTESSKSLHLESGAEFDKDTSKTPLKPTIYTNFHVIP- 78

Query: 61  KAFVASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSDVLKRKAS--------NN 120
            +F  S  SS R+ R  + DS S+ETIVVDS+S  EDNVVLS VLKRKA+        + 
Sbjct: 79  PSF--SCLSSQRKPRVIILDSESIETIVVDSESFDEDNVVLSHVLKRKATAIAPCAKGDT 138

Query: 121 VSLPKKPNSIKCLVLNT------SAPVSSNAQKS------------------IDTTIEDL 180
              PKKP + +   +          P+SS+   S                   D TI++L
Sbjct: 139 PERPKKPKTTRPTNVEELYEKLFGTPISSHEAPSSGKHPSKSTLSSSKIPPTTDETIDNL 198

[Close]

BLAST of Chy2G041380.1 vs. NCBI nr
Match: KAA0043039.1 (flocculation protein FLO11-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 4.42e-08
Identity = 60/177 (33.90%), Postives = 78/177 (44.07%), Query Frame = 0


Query: 39  RPPSSPSKVSGKGTFPIKAFVASRASSSRRSRFNVSDSASVETIVVDSDSTSEDNVVLSD 98
           +PP+SP K S        +F  +  S  RRS   +SD   +ET+VV+S  +++DNVVLSD
Sbjct: 11  KPPNSPLKPSTVTNTHSPSFRFANFSHQRRSSVIISDFEFIETVVVNSKLSNDDNVVLSD 70

Query: 99  VLKRKASNNVS--------LPKKPN------------------------SIKCLVLNTSA 158
           V+K K S+  S        L K P                         S  C   NTSA
Sbjct: 71  VMKWKVSDKASICKEGVSDLSKNPRVRRSSNADKLYKELFGIPPLGHKASFTCKAHNTSA 130

Query: 159 PVSSNAQKSIDTTIEDLFTKFAWDPKVLDSGGHPHSSSANTATESAPHPGFTSTSIL 183
             SS    S D TI+DLFTKF      L+S    H      +  S P P FT++  L
Sbjct: 131 SSSSKPALSNDETIKDLFTKFYHAFDRLNSNVPQHLFQNEPSLNSIPQPPFTASEAL 187

[Close]

BLAST of Chy2G041380.1 vs. NCBI nr
Match: KAA0032272.1 (uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK17076.1 uncharacterized protein E5676_scaffold1327G00250 [Cucumis melo var. makuwa])

HSP 1 Score: 53.9 bits (128), Expect = 3.22e-05
Identity = 54/150 (36.00%), Postives = 76/150 (50.67%), Query Frame = 0


Query: 28  SLHE----ASSVITSRPPSSPSKVSGKGTFPIKAFVASRASSSRRSRFNVSDSASVETIV 87
           S+HE    ASS  T++PP  P  V+   + P   F     S  RR R  +SDS S+E + 
Sbjct: 2   SMHEESVVASSKETTKPPLKPLTVTDTQS-PSSRFA--NFSHQRRPRIIISDSKSIEIVA 61

Query: 88  VDSDSTSEDNVVLSDVLKRKASNNVSLPKKPNSIKCLVLNTSAPVSSNAQKSIDTTIEDL 147
            +S+S+ +DNVVLS+VLKRKAS+   + K+  S+  L        SSNA +      E+L
Sbjct: 62  AESESSEDDNVVLSNVLKRKASSKAPICKE--SVSDLSKKPGVGRSSNANE----LYEEL 121

Query: 148 FTKFAWDPKVLDSGGHPHSSSANTATESAP 173
           F         + S GH  SS++      AP
Sbjct: 122 FG--------ISSLGHKASSASKVQNTYAP 134

The following BLAST results are available for this feature:

BLAST of Chy2G041380.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy2G041380.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0K752	2.5e-15	52.53	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G201890 PE=4 SV=1	[more]
A0A5A7UBA4	3.0e-08	35.35	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]
A0A5D3BFA1	3.0e-08	35.35	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A5A7TP88	2.1e-06	33.90	Flocculation protein FLO11-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_...	[more]

BLAST of Chy2G041380.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN44137.1	1.61e-19	52.53	hypothetical protein Csa_015624 [Cucumis sativus]	[more]
TYJ97943.1	9.34e-10	36.41	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0051667.1	9.42e-10	36.41	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0043039.1	4.42e-08	33.90	flocculation protein FLO11-like [Cucumis melo var. makuwa]	[more]
KAA0032272.1	3.22e-05	36.00	uncharacterized protein E6C27_scaffold219G001100 [Cucumis melo var. makuwa] >TYK...	[more]

BLAST of Chy2G041380.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 155..196
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..51
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..49
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 159..196

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy2G041380	Chy2G041380	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy2G041380.1.exon2	Chy2G041380.1.exon2	exon
Chy2G041380.1.exon1	Chy2G041380.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy2G041380.1.cds2	Chy2G041380.1.cds2	CDS
Chy2G041380.1.cds1	Chy2G041380.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy2G041380.1	Chy2G041380.1-protein	polypeptide