Chy1G015670.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy1G015670.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chrH01: 21636614 .. 21645560 (-)
Sequence length	477
RNA-Seq Expression	Chy1G015670.1
Synteny	Chy1G015670.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATGCGTTCATATCCTATCCGCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCAAAGATTAACCATTACTCTCAACTATTTTCTCTCTATAATAAAATGCACCTTGCTGGACTTTCCCCCGATCTCTTCACACTGAATATATTGGAGAATTGTTTTTGTAATTTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGCTATATTCCTGTTATAGTCACATATAACACCTTGATTAAGGATTGTGTAGGGACCATAGGATTAGTGTAGCCACACGGTTTTTTCTGAGAATGCAAAAGTTAAGGTTGTACGCCCAATATTTTTTATTTGATTTATATTTAATATTTTGTACTATGTCATTGATACATTTTTTTTTATATATGCCATCATGCATTTACACACACTCACAAGCCCTCTACCTAGGCTACAACCTTATAGAACTGGAATTGAGGATGGAGTAGTGTTGACTTTCAAGGGGTTTCGACCCCATGCAAGCACATAAAAATAACATTAGAATAAGTTTGAGGGTCTTTCCCTTATAGGGGTGTAAATACCAACACCATGACATTTTTCTTTTAGCATATTTTATTTTATGAGTCAACTTTCGAAATTATTATTTTTTATTTTTTTAAAACAAAATTTCTTATTTTTCTAAAATTTCAAATCATACATATTTTCTCTCTCTCTTTTTTTTAAAAGTTCAATCATAGTATTTTCTACATTATTGATATATTTTTTTTCTTAAGAAAATTTTGCTTAGATTTTTATTTATCTTAGTACATAAAAATCTTATTTTATTTGATTTTTGATTTTTGAATTTTGATTCGTTCTAATTCGTTCTGATTCGTTCTATTCTTTTGATTCTTTTGATTCTGTTGATATTTTTTATTTTCTCTCTCCTCCCTTTCTTTTTGTTCTTCAAAGTTTTCAAAATAATCAAAGGAAAGCATAGCTCGTCCTACCCCAATTCGTCATCCTTACAATATAAGGCATAAAAGACGAATAATTGAAGAACAAGATGAAGACATGAATAGAATGAGACAAGATATTAATAATCTTGGGAAACAAGTTTCAAAAGTACTGGAATTGCTTTCAGCATAAAAAGAAAAAGTCGTCGTAGAAATAACACAATCAATCAATCGAGTTCAGGACAACGATGATCCCATTTATCCCCTAGGATTTACGCCACGCCATGCCACATGAATGTTCCACAGTCTCAAACCACTCAACACTATGTTGTTATGAATCCGCTTTTTGTTGTTCCACCTCCTGTCCCAGATATAGAACAATTGGAAGCTCAAGCTAAAATTCAAGACATGGGACAAAATGAGAACACTCCGGCTAAGCAAAAACTAGATGTTTTGGAAGAAAGGTTGCGAGCAATTGAAGGGACTAACGTTTATGGAAATATAGATGCAACACAGTTGTCCTTAGTGTCAAGCTTGATTATTCCAACAAAGTGTAAAGTTTTTGAATTTGACAAACATGATGGATCATCGTGTCCAAGAAGTCATCTTATAATGTATTGTGGAAAGATGGCAACGCTTATTGGTAATGATAAATTGTTGATCCATTGCTTTCAAGACATTTTGACTGGTCCAACTACTCGTTGGTATATTCAATTAGATAATGCACATTCATGTTTGGAAGGATTTAGCTTATGCATTTTTAAAGCAATACAAACATAATATTGTTATGGCTCCAGATCGTTTAGACCTACAACGGATGAAGAAGAAGAGTTCATAAAGATTTAAAGAATATGCTCAACGATGGAGAGATATGGCTGCAGAGGTTTAGCCACAATTAACAGACAAAAAAATGACATCTATGTTTATGAATACTTTGCGGGCGTCGTTCTATGATCGAATGATTGGTAATGCTACAACCAATTTTTCTGACATTATTGTTATTGGTGAAAAAATTGAATATGGGATAAAACACGGAAGGTTAACAGAGACTTCAGCTGAGTATGAGGGATTAAAGAAAGGAACAACATCTAAGAAGAAAGAAAGTGAGGTTCATGCAATTGGTTTTCCTAATTCAGGGAACCACAAGTCAATTTTTTGCCAAAGAAAACATGACCAAAATTTTCCTTCATATATAAGCAATGTTTCTCATATCCCTTATAACAACTATGTACTAGCTCACTATTTCTTTGGAGCCCCAAAACCTGTTAATTCAAACTATTCTTGACCATTTGTACAAGGTCAGGGTAGTGAGACCAACTCAGATACATGACGATTTGATCCAATTCCCATGATATATATAGAGCTTTTACCTCAGCTAATTCAAAATCGACAGTTAGCTCCTATCCCAATAAATCCTATACAACATCCTTATCCAAAATGGTATGATTCAAATGCTCAATGTGATTATCATGCCGGAGGAGCGAGACACCCAAATGAAAATTGTTTGGCTTTAAAAATGAAGGTGTAATCTTTAATAAATTCTGGATGGTTAAACTTCAAAAAAGCTGGTGAGAAGCCGGATGTCAACAACAATCCATTGCCTAATCATGAAAATTCAAAAGTGAACGTTGTAGATTGTTTTGTTGAAAAATGTAAAAATGAAGGCGAAACAGTTTATACATGTCCACCTGATTTCGAGCTTAACAATTGGGATATTGTAGATCTACCTACATTTTCAAAAGAATTTCAAGAGTAATGATTAAGCTTTTATTTGTCAAATTTCTTTAATTTTCTAATGGCTCTACCCAATGCCACAATATTTTGTTTGCTTTACAACATGAATGTACTTTTCTTTTGTTATTTAATGAAATCTTCGCATTTTCCTTTCATTATTTCTAATTTCTTCTTCTCTCTGCTTTATTTATTGCATTTTGCAAATTAAACACAAAAGTTCAAACTTTTTCATAGACAACATTCATAAGAACGAAAATGTTAGTAATTTTAGTTCTACCATTGATACCTTAATATACACTATGGAATCTAACAAAGAGAATGACGATGAAGATGTCGGGGGAATATTCGCAGAATTGTTAAGATTAGTAGAAGAAGAAGATAAGGTCCTAGGTCCTCACCAAGAGCTAGTTGAAGTAATCAATTTGGGTTCTCAAGAGGAATCAAAAGAGGTAAAAATTGGTACATCGATGACCAGTGAAACTCGAAAAAAAATGATCAATTTGTTACGTGAGTACTTAGGTATTTTTGCTTGAAGTTATCAGGATATGCCGGGGTTAAATACGGATATTGTAGTACATCGTGTTTCTTTGAAGCCAGAATGCAACCTAGTAAGACAAAAGCTACGTAAAATGAAGTTTGACGTATTGATTAAAATAAAAGAGGAAGTACAAAAACAAATTGAACAGGGTTCCTCACAGTCTCCAAATATCCTGAATGGATGACAAACATTGTTCCAGTACCCAAAAAAGACGAAAAAGTGAGAATGTGTGTGACTATAGAGATTGAAATCGAGCCAGTCCAAAAGACAACTTCCCTTTACCTCATATCGACATGTTGGTGGATAACACGACAGGATTCTCAACTTTCTCCTTCATGGATGGTTTTTAAGGATATAATCAAATCAAAATGGCTGAATAAGATAGAGAAAAAAACAACATTCAGCCTCAAAGTAATGCATTTTTGTTTAAAAAAATGTTGGGGTCACATATCAACGAGCAATGATTACACTTTTTCATGATATGGTGCATAAGGAAATAGAGGTGTATAGTGATGATATGATTGCAAAATTCAACGCAAATGAAGAACATACAACTATACTCCAAAAATTATTTAATCGATTGAGAAAGTATCAATTGAAATTATATCCATCCAAATGTACATTTGGGGCAACATCGGGAAAAATGTTGGGATCCATTGTCAGTGAAGAAGGGATCAAAGTAGACCCAAATAAAGTGAAGACTATCATGGAAATGTCATCCCTTGAAACAAAAAAAGAAGTTTGAGGTTTTCTTGGAAAATTGAACTACATATCCAGATTTATCTCGCATTGGACACCAACATGCGAACCAATCTTCAAGCTTTTACGTAAAAACAATCCAGGAAAATGGAATGAGGATTGTGAAGAAGCTTTCAACAAAATTAAGCACTATTTGCAGCGCCCACCTGTATTGATACCTCTAACTCTAGGACGACCGTTAATCCTATACTTGACAGTATTAAAAGATTCTATAGGTGGTGTTCTAGGACAACATAACTTATCAGGAAAGAAAGAACACGCTATTTATTATTTGAGCAAACAAAAAATCATCGATTATGAGTCGAAATACTCAATGTTAGAGCGAACTTGTTATGCTTTGGCATGGACCGCTCACCATTTGAGACAATATATGTTATATCATATAGCATGACTTATTTCAAAAATGGATCCAATAAAATATATTTTTGAGAAACCGTCATTATCTTGGATGATTGCAAAATGACAAGTTTTGTTGTCGGAGTATGATATTGTTTATGTTACTAAAAAAAACAATAAAGGGAAGTGCACTTTCTGATCATTTAGCTGCCCAACCAGTAGCAGATTATGAGCCAATGAGGGTTGATTTTTCAGATAAAAACATATTTTTAGTTGAAAATGATGCTATAGATTATGAGACATGGATTATGCTTCTTGATGATCATTCAAAGGAAGTATTAGAAGTCAGTGCATGTCATGCTATCAGCATAAAAGAAGTCGACCACAATTATGCATATTCTGAAGAAATCGACAATTCAAAATAAATTAAGCAAAGGACTTCTATCTTTGATCGTATCAAGCCTTCAACTACTCGATCTTCAAAATTTCAAAGATTGAGTATGGCCACGAAAGAAGAAGAAAATCAATGTCCAACGTCTACTTCCACTCAAACTTCAGTTTTCAAAAGGTTAAGTATCTTCACATCAAAGAAAGATCGACATTCAACATCTGCTTTTGATCGTCTAAAGATGTCAAGTGATCGACACGAAAGAGATGTAAACTTTGAAGGCAAAACCATTTCATGAAGAAAACAAGAACGATGAGATTCACAATCGTGTCCCATCACGCATGAAGAGGAGCTTGTCTATTGTTATAAATACAGAAGGTTCCTTGATAGTGAAGCCAAGAGTTATTATATTCACCAATTCTACAAATAAAGAAGGTGAACAAATCCTTGATGGGAATATGAGCTGCTAAATATGCAAAGCTCCTTATCGCAAGAGCCTAAACTACATGGTGCTCCTAGCCCACAAGAGCTTAAAAGGTGAATGGCAAGAAAAAAAAAACTTGAACTACGTTATGACTTGATCCCTCCATTATAAAAGGATACGTAGGCAACTTAAAGGAAACTTTAAGTTCAATCTAGCAGAACAAAAAAAAAAAAAAAACTTCAAATGTCATGGCTTGATTCTTTTCTTTAAAAGATGTTCATCTCTACTAAGGAATCATAACAAATTGGGGGCAAATTCCTAAATTCAAGATGTTCATTCCTAGTAACGATGTGATGCAATAAATTGAAGATGTACACAATTTGTGCAAAGACTATTTACAAGTTGAGTGCATGTAAAAAAAAAAGTCTCAAGATAGCTCAAAGGCTTCATTGATGATCCCTCATATTCAAGCTTGAAGGTTTCATTGATAATTCCTCAAATTCAAGCTCAAAGGTTTCATCGATGATTCCTTATATTCAAGCTTGAAGGCTTCATCGAGCAGCTCCACCTCTTTGAGAGGACGACGATCTTGCAGCTCCGCCTTCACCTCTCCAAGACGACGACAACGATGTAGCACCACTTCAGCCTCTTCAAGAAGATGCATACAATGGTAAAGCTTCAACCTCTACTTCATTTTTTATGTGTTGCAACCGAGAGGATTCATCTTCATCTTCTTCCAGGAGTCGCAATCGAGAGAATTCATCTTCATCTTCTCTCAGGTGCTACAATTGAAGAGGATTCATCTTCATCTTCTCCTATATGTCGTAGCCGAGAGCATTCATCTTTATCTTCTTCAATGTGCTGTAATCGAAGAGGATTCATCTTCATCTTCTCCTATAGTCGTAGCCGAGAGCATTCATCTTTATCTTCTTCCAGGTGCTGTAACCGAAGAAGATTCATCTTCATCTTCTCATATATGTCGTAGTCGAGATCATTCATTTTTATCTTCTTCCATGTATTGCAGTCGAGAGGATTCATCTTCATCTTCTCCCATGTGTCGCAGTCGAAGAGGATTCATCTTTATCTTCTTCATGTGCTGCAGTCGAAAGGATTCATCTTCATCTTCTTTTTGTGCTACAGTCGAAAAGATTGAAGCTCTTTTGAAGATAGAAACTAGAAGACTTCCTAACTTCAAAGTCGACCATCCTCGAAGATTGAAGCTCCTTTGAAGATATAAACTTTCTTCCAAGACTCCAACTTCCCTCGAAGATTGAAGCTCCTTTGAAGATACAAACTTTCTTTTAAGACTCCAACTTCAAGAACATCACGTGCTCCGCTTCTTCAAGTCAAGCGTATGCATTCAACCAACTTGAAGAACATCACGTGCTCCGCTTCTCCAAATTAAGCATAGACGTTCAACAAACTTCAAGAACATCATGTGCTATGCTTCTTCAAATCAAGCGTAAGCATCCAATCGAGAGAGAATCAGAATGATCAAAATTCTAGAGATTGAACCATATCGCATCAAATAAAAAAAAAGTACAACACCAACTCAAGTTCAACACCACGAATCAAATTTCTTCGAAAATCTCGTGCGAACAAATTGGCACGCCCAGTAGGACAATCTCTACCTATCATCTCTCTCTCAAAACTCAACTCAACAAACCAACAAATGGCATTAAATAAAGTTGCATCTAAATCTTCTGTTTCAAGCGATGCTTACGGGAGATCTTTCATCTACAATCGTTCAAAGGGGATCATCCAAGAGCAGGATCAAGATTCTGTCATCGCGCAAAACATTCTTAAGCAATTGATGGAATCTCCTAAAGGCGGGATCATCATCAAAGAAAATCATTTGTTCAACAACTTTACTCCTACTTCTGATCTATCAGAGCAAGAATCAGACCTTGGAGTAGTGTCTGTCATGACGGCTGATGTAATTGTTGAGGTCGCCATGGCGGAGATGGAAAGGAAAATAAATTTCCTAACGAAAGTTGTCGAGGACCGAGAACATGAAATTGCTGCCTTGAAAGACTAAATGAAAGCTTGTGAAACTGATAAGTCGAGCAAAACTTCTGTTGTCAAAGCTGACGACAAAGGAAAAGCTGTGTTACAGGAAAATCAGACGCAACAATCCATCTCTGTCACCTCTCTGTCAGTCCAACAATTGCAGGATATGATCACAAGCTCCATAAGAGCTTAGTATGGAGGACCGCCACAAACTTCTTTTATGTACTCCAAGCCATATACTAAGAGAATCAATGGCCTGCTAATGCCTGTTGGGTATCAACCTCTAAAGTTTCAACAATTCAACGGAAAGGGCAATCCAAAGCAACACATTGCTCACTTTGTTGAAACATGTGAGAACGCAGGATCAAGAGGAGACCAACTAGTCAGGCAGTTTGTTCGAAGCTTGAAAGGAAATGCTTTCGAGTGATATACTGATCTGGAGCCAGAAGTCATTGACATTTGGGAACAACTAGAAAATGAATTCCTCAACCGTGTCTACAACACCAGACGCACTGTAAGCATGATGGAGCTTACAAACATGAGACAGCGAAAGGGAGAGCTAGTCATTGACTACATGAATCGATGGAGAGCTTTAAGCTTGGATTGCAAAGACAAGCTCACAAAACTGTCTGCAGTGAAGATGTGCACCCAAGGCATGCACTGGAAACTTTTTTATATTTTGCAAGGAATAAAACCTCGTATATTTGAAGAACTAGCAACTCGTGCCCACGACATGGAATTGAGCATCGCTAATAGAAGAACTAAAGATTTCTTAATCTCTGAAGTAAAAAAGGGAAACAATGAAATGAACAACACTAGAAAGATCACAAATAGTGTCATAAATGAATCTATGGTTGTTCATGAGTCTCCATTGAAATCTTTCTCCAAAAGAAAAGAAACAAAAATTGAAAGAAAGCATGATGGCGAAGAGAAGCATCGACCATTTTCTGACTCTGATGTTGCAGACATGTTAGAGCAGATGCTAGACAAACAACTTATTCAGTTGCCAGAATGCAAACGACTGGAACAAGCAGGAAAAGTAGATGATCCCAACTACTGTAAGTACCATTGGGTCATTAGCCATTCTGTTGAAAAGTGTTTCGTTTTGAAGGAGCTGATTCTAAAGTTGGCTCGTGAAAAGAAGATCGAATTGGATATGGATGAAGTAGCTCGGACGAATCATGTTGCAATTGAGATGACTTCAAGTACTCTGCCATCAACGCTGCCTTATGATCAATGGAAAAACTTGATTCAGTTTGGAACTTTCGAACCTATACTTGTTCGATTCCAATAAAAGTTCGTGACGACAGACTCTCAAAACAAAGAAAAACCTATTGAAGATGATTGCAAAGGATGGATAGTCATAACTCGTAAAAAGGGGAGACAACCAAATTACTTACAAACGAAGTTGCACTTCCATCAGAAGCATGGAAAAGGAAGCGACTCTCGAAAAAAAGGAGAAAAGAAATAAGAAGATGTGGAAGCCTAAACCTATCAAAGGAAAAGACGAGAACTTCTTTCGACCTCGACGGTTAATAAATTTGATAGAATGCCTCCCAAGAAGCTTCTTTGATGATCATCTAAAGGAAATATTAGAAGTCACTACATGTCATGCTATCAGCATAAAAGAAGTCGACAACAATTATGCATTTTCTGAAAAATCGACAATTCAAAATAAATTACGCAAAGGACTTATGTCTTTGATCGTATCAAACCTTCAACTACTCGATCTTCAGTATTTCAAAGATCGAGTATGGCCACGAAAGAAGAAGAAAATCGATGTCCAACGTCTACTTCCATTCGAACTTCAGTTTTCAAAAGGCTAA

mRNA sequence

ATGATGCGTTCATATCCTATCCGCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCAAAGATTAACCATTACTCTCAACTATTTTCTCTCTATAATAAAATGCACCTTGCTGGACTTTCCCCCGATCTCTTCACACTGAATATATTGGAGAATTGTTTTTGTAATTTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGCTATATTCCTGGAAGTGCACTTTCTGATCATTTAGCTGCCCAACCAGTAGCAGATTATGAGCCAATGAGGGTTGATTTTTCAGATAAAAACATATTTTTAGTTGAAAATGATGCTATAGATTATGAGACATGGATTATGCTTCTTGATGATCATTCAAAGGAATATTTCAAAGATCGAGTATGGCCACGAAAGAAGAAGAAAATCGATGTCCAACGTCTACTTCCATTCGAACTTCAGTTTTCAAAAGGCTAA

Coding sequence (CDS)

ATGATGCGTTCATATCCTATCCGCCCCATTTCTTCTTTCAATCGCTTACTTGGTGGCCTTGCAAAGATTAACCATTACTCTCAACTATTTTCTCTCTATAATAAAATGCACCTTGCTGGACTTTCCCCCGATCTCTTCACACTGAATATATTGGAGAATTGTTTTTGTAATTTGAATCGGGTTAGCGAAGGTCTTGCGGCCATGGCGGGGATTTTAAGGAGAGGCTATATTCCTGGAAGTGCACTTTCTGATCATTTAGCTGCCCAACCAGTAGCAGATTATGAGCCAATGAGGGTTGATTTTTCAGATAAAAACATATTTTTAGTTGAAAATGATGCTATAGATTATGAGACATGGATTATGCTTCTTGATGATCATTCAAAGGAATATTTCAAAGATCGAGTATGGCCACGAAAGAAGAAGAAAATCGATGTCCAACGTCTACTTCCATTCGAACTTCAGTTTTCAAAAGGCTAA

Protein sequence

MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNRVSEGLAAMAGILRRGYIPGSALSDHLAAQPVADYEPMRVDFSDKNIFLVENDAIDYETWIMLLDDHSKEYFKDRVWPRKKKKIDVQRLLPFELQFSKG*

Homology

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BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot
Match: Q9C8T7 (Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX=3702 GN=At1g63330 PE=2 SV=2)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
          M++S P+  I  FN+LL  +AK+  +  + SL  KM   G+S +L+T NIL NCFC  ++
Sbjct: 1  MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 61 VSEGLAAMAGILRRGYIP 79
          +S  LA +  +++ GY P
Sbjct: 61 ISLALALLGKMMKLGYEP 78

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BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 66.2 bits (160), Expect = 3.7e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P+  I  FN+LL  +AK+  +  + SL  KM   G+S +L+T NIL NCFC  ++
Sbjct: 76  MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 135

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +  +++ GY P
Sbjct: 136 ISLALALLGKMMKLGYEP 153

[Close]

BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P   I  FN+LL  +AK+N +  + SL  +M   G+S DL+T +I  NCFC  ++
Sbjct: 74  MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQ 133

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +A +++ GY P
Sbjct: 134 LSLALAVLAKMMKLGYEP 151

[Close]

BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P   I  FN+LL  +AK+N +  + SL  +M   G+S DL+T +I  NCFC  ++
Sbjct: 74  MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQ 133

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +A +++ GY P
Sbjct: 134 LSLALAVLAKMMKLGYEP 151

[Close]

BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot
Match: Q9LQ15 (Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g62914 PE=2 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 4.9e-10
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M +S P   I  F++LL  +AK+N +  + S   KM + G+S +L+T NIL NCFC  +R
Sbjct: 69  MAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSR 128

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +  +++ GY P
Sbjct: 129 LSLALALLGKMMKLGYEP 146

[Close]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL
Match: A0A1S4E1M9 (LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial OS=Cucumis melo OX=3656 GN=LOC107991456 PE=4 SV=1)

HSP 1 Score: 142.1 bits (357), Expect = 2.0e-30
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
          MMRSYP  P+SSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPD+FTLNIL NC C +NR
Sbjct: 1  MMRSYPPPPLSSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDIFTLNILVNCLCKVNR 60

Query: 61 VSEGLAAMAGILRRGYIP 79
          VSE LAAM GILRRGYIP
Sbjct: 61 VSEALAAMVGILRRGYIP 78

[Close]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 137.5 bits (345), Expect = 4.9e-29
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M+RSYPI PISSFNRLLGGLAKINHYSQLFSLYNKM LAGLSP + TLNIL NC CN+NR
Sbjct: 31  MVRSYPISPISSFNRLLGGLAKINHYSQLFSLYNKMCLAGLSPSVVTLNILVNCLCNVNR 90

Query: 61  VSEGLAAMAGILRRGYIP 79
           VSE LAA+AGILRRGYIP
Sbjct: 91  VSEALAALAGILRRGYIP 108

[Close]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL
Match: A0A5D3DRB9 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G001320 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 8.3e-29
Identity = 67/77 (87.01%), Postives = 69/77 (89.61%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           MMRSYPI PI SFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPD FTLNIL NC CN+NR
Sbjct: 59  MMRSYPIPPIFSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDTFTLNILVNCLCNVNR 118

Query: 61  VSEGLAAMAGILRRGYI 78
           VSE LAA+ GILRR YI
Sbjct: 119 VSEALAAITGILRRVYI 135

[Close]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 6.6e-26
Identity = 62/78 (79.49%), Postives = 66/78 (84.62%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M+RSYPI PISSF+ LLGGLAKI HYS LFSLYNKM LAGLSP   TLNIL NC CN+NR
Sbjct: 31  MLRSYPIPPISSFDCLLGGLAKIKHYSLLFSLYNKMRLAGLSPSAITLNILVNCLCNVNR 90

Query: 61  VSEGLAAMAGILRRGYIP 79
           VSE LA MAG+LRRGYIP
Sbjct: 91  VSEALAGMAGLLRRGYIP 108

[Close]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.5e-25
Identity = 61/78 (78.21%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M+RSYPI  ISSF+ LLGGLAKI HYS LFSLYNKM LAGLSP   TLNIL NC CN+NR
Sbjct: 31  MLRSYPIPSISSFDCLLGGLAKIKHYSLLFSLYNKMRLAGLSPSAITLNILVNCLCNVNR 90

Query: 61  VSEGLAAMAGILRRGYIP 79
           VSE LA MAG+LRRGYIP
Sbjct: 91  VSEALAGMAGLLRRGYIP 108

[Close]

BLAST of Chy1G015670.1 vs. NCBI nr
Match: KGN45331.2 (hypothetical protein Csa_015776 [Cucumis sativus])

HSP 1 Score: 149 bits (377), Expect = 1.94e-38
Identity = 73/78 (93.59%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           MMRSYPI  ISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNIL NC CNLNR
Sbjct: 671 MMRSYPIPSISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILANCLCNLNR 730

Query: 61  VSEGLAAMAGILRRGYIP 78
           VSEGLAAM GILRRGYIP
Sbjct: 731 VSEGLAAMTGILRRGYIP 748

[Close]

BLAST of Chy1G015670.1 vs. NCBI nr
Match: XP_016901890.1 (PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g12700, mitochondrial [Cucumis melo])

HSP 1 Score: 142 bits (358), Expect = 7.75e-37
Identity = 68/78 (87.18%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1  MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
          MMRSYP  P+SSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPD+FTLNIL NC C +NR
Sbjct: 1  MMRSYPPPPLSSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDIFTLNILVNCLCKVNR 60

Query: 61 VSEGLAAMAGILRRGYIP 78
          VSE LAAM GILRRGYIP
Sbjct: 61 VSEALAAMVGILRRGYIP 78

[Close]

BLAST of Chy1G015670.1 vs. NCBI nr
Match: XP_011659291.1 (pentatricopeptide repeat-containing protein At1g62914, mitochondrial isoform X1 [Cucumis sativus])

HSP 1 Score: 141 bits (356), Expect = 1.81e-36
Identity = 69/78 (88.46%), Postives = 72/78 (92.31%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M+RSYPI PISSFN LLGGLAKINHYSQLFSLYNKM LAGLSPDLFTL+IL NC CN+NR
Sbjct: 82  MLRSYPIPPISSFNCLLGGLAKINHYSQLFSLYNKMRLAGLSPDLFTLSILANCLCNVNR 141

Query: 61  VSEGLAAMAGILRRGYIP 78
           VSE LAAMAGILRRGYIP
Sbjct: 142 VSEALAAMAGILRRGYIP 159

[Close]

BLAST of Chy1G015670.1 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus])

HSP 1 Score: 142 bits (358), Expect = 3.74e-36
Identity = 69/78 (88.46%), Postives = 73/78 (93.59%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           MMRS+PI PISSFNRLLGGLAKINHYSQLFSLYN+M LAGLSPDLFTL+IL NC CN+NR
Sbjct: 82  MMRSHPIPPISSFNRLLGGLAKINHYSQLFSLYNEMRLAGLSPDLFTLSILANCLCNVNR 141

Query: 61  VSEGLAAMAGILRRGYIP 78
           VSE LAAMAGILRRGYIP
Sbjct: 142 VSEALAAMAGILRRGYIP 159

[Close]

BLAST of Chy1G015670.1 vs. NCBI nr
Match: KAA0059713.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 137 bits (346), Expect = 1.22e-34
Identity = 67/78 (85.90%), Postives = 71/78 (91.03%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M+RSYPI PISSFNRLLGGLAKINHYSQLFSLYNKM LAGLSP + TLNIL NC CN+NR
Sbjct: 31  MVRSYPISPISSFNRLLGGLAKINHYSQLFSLYNKMCLAGLSPSVVTLNILVNCLCNVNR 90

Query: 61  VSEGLAAMAGILRRGYIP 78
           VSE LAA+AGILRRGYIP
Sbjct: 91  VSEALAALAGILRRGYIP 108

[Close]

BLAST of Chy1G015670.1 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P+  I  FN+LL  +AK+  +  + SL  KM   G+S +L+T NIL NCFC  ++
Sbjct: 76  MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 135

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +  +++ GY P
Sbjct: 136 ISLALALLGKMMKLGYEP 153

[Close]

BLAST of Chy1G015670.1 vs. TAIR 10
Match: AT1G63330.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 66.2 bits (160), Expect = 2.6e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1  MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
          M++S P+  I  FN+LL  +AK+  +  + SL  KM   G+S +L+T NIL NCFC  ++
Sbjct: 1  MVKSRPLPSIFEFNKLLSAIAKMKKFDLVISLGEKMQRLGISHNLYTYNILINCFCRRSQ 60

Query: 61 VSEGLAAMAGILRRGYIP 79
          +S  LA +  +++ GY P
Sbjct: 61 ISLALALLGKMMKLGYEP 78

[Close]

BLAST of Chy1G015670.1 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P   I  FN+LL  +AK+N +  + SL  +M   G+S DL+T +I  NCFC  ++
Sbjct: 74  MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQ 133

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +A +++ GY P
Sbjct: 134 LSLALAVLAKMMKLGYEP 151

[Close]

BLAST of Chy1G015670.1 vs. TAIR 10
Match: AT1G62910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 31/78 (39.74%), Postives = 49/78 (62.82%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M++S P   I  FN+LL  +AK+N +  + SL  +M   G+S DL+T +I  NCFC  ++
Sbjct: 74  MVKSRPFPSIVEFNKLLSAVAKMNKFELVISLGEQMQTLGISHDLYTYSIFINCFCRRSQ 133

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +A +++ GY P
Sbjct: 134 LSLALAVLAKMMKLGYEP 151

[Close]

BLAST of Chy1G015670.1 vs. TAIR 10
Match: AT1G62914.1 (pentatricopeptide (PPR) repeat-containing protein )

HSP 1 Score: 65.9 bits (159), Expect = 3.5e-11
Identity = 31/78 (39.74%), Postives = 48/78 (61.54%), Query Frame = 0


Query: 1   MMRSYPIRPISSFNRLLGGLAKINHYSQLFSLYNKMHLAGLSPDLFTLNILENCFCNLNR 60
           M +S P   I  F++LL  +AK+N +  + S   KM + G+S +L+T NIL NCFC  +R
Sbjct: 69  MAQSRPFPSIIEFSKLLSAIAKMNKFDLVISFGEKMEILGISHNLYTYNILINCFCRCSR 128

Query: 61  VSEGLAAMAGILRRGYIP 79
           +S  LA +  +++ GY P
Sbjct: 129 LSLALALLGKMMKLGYEP 146

The following BLAST results are available for this feature:

BLAST of Chy1G015670.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9C8T7	3.7e-10	39.74	Pentatricopeptide repeat-containing protein At1g63330 OS=Arabidopsis thaliana OX...	[more]
Q9SH26	3.7e-10	39.74	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX...	[more]
Q9CAM8	4.9e-10	39.74	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q9LQ16	4.9e-10	39.74	Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX...	[more]
Q9LQ15	4.9e-10	39.74	Pentatricopeptide repeat-containing protein At1g62914, mitochondrial OS=Arabidop...	[more]

BLAST of Chy1G015670.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S4E1M9	2.0e-30	87.18	LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing protein At1g12...	[more]
A0A5A7UUW8	4.9e-29	85.90	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5D3DRB9	8.3e-29	87.01	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DYL6	6.6e-26	79.49	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]
A0A5D3C8J0	5.5e-25	78.21	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of Chy1G015670.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN45331.2	1.94e-38	93.59	hypothetical protein Csa_015776 [Cucumis sativus]	[more]
XP_016901890.1	7.75e-37	87.18	PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide repeat-containing pro...	[more]
XP_011659291.1	1.81e-36	88.46	pentatricopeptide repeat-containing protein At1g62914, mitochondrial isoform X1 ...	[more]
XP_011659273.2	3.74e-36	88.46	pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sa...	[more]
KAA0059713.1	1.22e-34	85.90	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK26151...	[more]

BLAST of Chy1G015670.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G63400.1	2.6e-11	39.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63330.1	2.6e-11	39.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	3.5e-11	39.74	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G62910.1	3.5e-11	39.74	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62914.1	3.5e-11	39.74	pentatricopeptide (PPR) repeat-containing protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..94 e-value: 3.6E-9 score: 38.4
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 12..44 e-value: 2.0E-4 score: 19.3
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 11..57 e-value: 1.6E-8 score: 34.6
None	No IPR available	PANTHER	PTHR47938	RESPIRATORY COMPLEX I CHAPERONE (CIA84), PUTATIVE (AFU_ORTHOLOGUE AFUA_2G06020)-RELATED	coord: 1..116
None	No IPR available	PANTHER	PTHR47938:SF12	PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 5, MITOCHONDRIAL	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy1G015670	Chy1G015670	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G015670.1.exon3	Chy1G015670.1.exon3	exon
Chy1G015670.1.exon2	Chy1G015670.1.exon2	exon
Chy1G015670.1.exon1	Chy1G015670.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G015670.1.cds3	Chy1G015670.1.cds3	CDS
Chy1G015670.1.cds2	Chy1G015670.1.cds2	CDS
Chy1G015670.1.cds1	Chy1G015670.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy1G015670.1	Chy1G015670.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0009734	auxin-activated signaling pathway
cellular_component	GO:0005634	nucleus
molecular_function	GO:0005515	protein binding