Chy1G010470.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy1G010470.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Reverse transcriptase domain-containing protein
Location	chrH01: 11454891 .. 11456151 (-)
Sequence length	861
RNA-Seq Expression	Chy1G010470.1
Synteny	Chy1G010470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACCGCGCATCAGGCATAAGTGAGATTCGTGATTCAGGTTATGTAACAAATGGGCAATTCGTTGATGGGCCTTTAATTGATTATGGACCGACTAAATTGAATGATGGGCCGGCTGGAGTTGATGGGTTGGATACAAAAAATGGAAAAGAAGTCGGTGAAGTTCAGAATTCAAATGGTGGTGTAATGCAGAGAAGAAATCATGGTGAAGGGAATAATTGTCCTAAATCTTCATGGGCTTCCTTATTTGGATCGACAAGTGGAAATTCTATGATCTATACGCCTCCTACCTCCGTAGGGGATAAAATTGTGGTTATCCCTACCGAAGAGGTTATTGGTCAAGGAGTTCGAGTGTGGGAAAATTCCCTAGTAGGGAAATTAATTGATGCAAAATTGCGTTATGTAGTCATATATCGACTTATAGAGAAAATTTGAGGTAGAATTGAAATGCTAACGATCACAATTCTGGAGAATAGTCTCATCTGCTTCTAATTTAGACACCCAAAATTGGTTGAATGGATCCTTTCCCGTGGACCGTGGCATCTTGGGGGAAAACCCATGCTCCTCCGCAAATGGACCCCAAGTATTGTCCCTGAATTTTTTGTTTTTTTATTATGTTCCTGTATGGATTAAATTAGGTAGGGTCCCAATAGAGTTATGGACAGATGCCGGATTGGCTGTTGTTGCTAGTGCTATAGGCAAACCCATATCCTAAAATCTTGCTACCAAGGAAAGACGAAGGCTGTCATATGCTCGAGTATGTGTTGAACTAAATGTAGACTGCCCTATGCTTGCTGAAATAACAGTAAACCTTAGGGGAGAGGATTTCATTGTGACTGTAAATTATGAGTGGAAGCCTCGAAAGTGTAACCTGTGTCGGTCTTTTGGACACTGTAATGATACCTGTCCTAAGATTGTAGAAAACAAAGTCCTTAGAGAGGAAGATGTGAGCAAGGTGGTTCCTAATAAAGGGGAGGAACTGACAAGTGTGGCTTATGGAGATGTAGTGTTGGAGTTCTTTAAACAGTTGGAAGAAGATGAGATTAATAGCAACCCCATAAGGCCTATTAAGGAAAAGGTAGTAGAAAATCGAAATGATTTTACTCTTGTCACTAGGAAGAAAAGGGAGTTGGTTTTTGTACAAGATAAGGGCGAAAGTGTGGAGGTGACTATGCCTAACTCTTTTGGCAGCCTTATGGAGTTGGGTGAAGGAGACAAGTGGGCCTTATCTATAGTGGATGGCTTTCCCCCACCCCAACAG

mRNA sequence

ATGAACCGCGCATCAGGCATAAGTGAGATTCGTGATTCAGGTTATGTAACAAATGGGCAATTCGTTGATGGGCCTTTAATTGATTATGGACCGACTAAATTGAATGATGGGCCGGCTGGAGTTGATGGGTTGGATACAAAAAATGGAAAAGAAGTCGGTGAAGTTCAGAATTCAAATGGTGGTGTAATGCAGAGAAGAAATCATGGTGAAGGGAATAATTGTCCTAAATCTTCATGGGCTTCCTTATTTGGATCGACAAGTGGAAATTCTATGATCTATACGCCTCCTACCTCCGTAGGGGATAAAATTGTGGTTATCCCTACCGAAGAGGAAAGACGAAGGCTGTCATATGCTCGAGTATGTGTTGAACTAAATGTAGACTGCCCTATGCTTGCTGAAATAACAGTAAACCTTAGGGGAGAGGATTTCATTGTGACTGTAAATTATGAGTGGAAGCCTCGAAAGTGTAACCTGTGTCGGTCTTTTGGACACTGTAATGATACCTGTCCTAAGATTGTAGAAAACAAAGTCCTTAGAGAGGAAGATGTGAGCAAGGTGGTTCCTAATAAAGGGGAGGAACTGACAAGTGTGGCTTATGGAGATGTAGTGTTGGAGTTCTTTAAACAGTTGGAAGAAGATGAGATTAATAGCAACCCCATAAGGCCTATTAAGGAAAAGGTAGTAGAAAATCGAAATGATTTTACTCTTGTCACTAGGAAGAAAAGGGAGTTGGTTTTTGTACAAGATAAGGGCGAAAGTGTGGAGGTGACTATGCCTAACTCTTTTGGCAGCCTTATGGAGTTGGGTGAAGGAGACAAGTGGGCCTTATCTATAGTGGATGGCTTTCCCCCACCCCAACAG

Coding sequence (CDS)

ATGAACCGCGCATCAGGCATAAGTGAGATTCGTGATTCAGGTTATGTAACAAATGGGCAATTCGTTGATGGGCCTTTAATTGATTATGGACCGACTAAATTGAATGATGGGCCGGCTGGAGTTGATGGGTTGGATACAAAAAATGGAAAAGAAGTCGGTGAAGTTCAGAATTCAAATGGTGGTGTAATGCAGAGAAGAAATCATGGTGAAGGGAATAATTGTCCTAAATCTTCATGGGCTTCCTTATTTGGATCGACAAGTGGAAATTCTATGATCTATACGCCTCCTACCTCCGTAGGGGATAAAATTGTGGTTATCCCTACCGAAGAGGAAAGACGAAGGCTGTCATATGCTCGAGTATGTGTTGAACTAAATGTAGACTGCCCTATGCTTGCTGAAATAACAGTAAACCTTAGGGGAGAGGATTTCATTGTGACTGTAAATTATGAGTGGAAGCCTCGAAAGTGTAACCTGTGTCGGTCTTTTGGACACTGTAATGATACCTGTCCTAAGATTGTAGAAAACAAAGTCCTTAGAGAGGAAGATGTGAGCAAGGTGGTTCCTAATAAAGGGGAGGAACTGACAAGTGTGGCTTATGGAGATGTAGTGTTGGAGTTCTTTAAACAGTTGGAAGAAGATGAGATTAATAGCAACCCCATAAGGCCTATTAAGGAAAAGGTAGTAGAAAATCGAAATGATTTTACTCTTGTCACTAGGAAGAAAAGGGAGTTGGTTTTTGTACAAGATAAGGGCGAAAGTGTGGAGGTGACTATGCCTAACTCTTTTGGCAGCCTTATGGAGTTGGGTGAAGGAGACAAGTGGGCCTTATCTATAGTGGATGGCTTTCCCCCACCCCAACAG

Protein sequence

MNRASGISEIRDSGYVTNGQFVDGPLIDYGPTKLNDGPAGVDGLDTKNGKEVGEVQNSNGGVMQRRNHGEGNNCPKSSWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCNLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINSNPIRPIKEKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWALSIVDGFPPPQQ

Homology

[Close]

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL
Match: A0A5A7TVB8 (Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold363G00750 PE=4 SV=1)

HSP 1 Score: 236.1 bits (601), Expect = 1.8e-58
Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = 0


Query: 99  VGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCNL 158
           VG  + +    +ERRRLSYARVCVEL+VD  M AEITVNLRG DFIV VNY+ KPRKCNL
Sbjct: 83  VGKPLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNLRGVDFIVLVNYKLKPRKCNL 142

Query: 159 CRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINSN 218
           C +FGH +   P+ VE+KVL+EE VSK++P K +EL S   G VVLE FKQLE+ EI S+
Sbjct: 143 CWAFGHSSGKYPRSVESKVLQEEVVSKIIPGKRDELDSETCGGVVLESFKQLEDGEIRSS 202

Query: 219 PIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWAL 278
           P RP    EK V+ R++FTLVTRKKRELV ++D+G+S+EVTMPNSFGSL ++G+ DKWAL
Sbjct: 203 PNRPSSQVEKEVDKRDEFTLVTRKKRELVSIRDRGKSLEVTMPNSFGSLFKVGDVDKWAL 262

Query: 279 SIVDGFPPPQQ 288
           +IV+G PPP Q
Sbjct: 263 TIVEGSPPPSQ 273

[Close]

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL
Match: A0A5D3DXE4 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1467G00020 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 3.4e-57
Identity = 142/312 (45.51%), Postives = 184/312 (58.97%), Query Frame = 0


Query: 18  NGQFVDGPLIDYGPTKLNDGPAGVDGLDTKNGKEVGEVQNSNGGVMQRRNHGEGNNCPKS 77
           NGQ   GP I+      ++G A   G   KN       Q +N       +  + +N  KS
Sbjct: 142 NGQCDFGPRINSADLMKHEGVA--SGSILKN-------QGANVNNFVENDLNKLSNDSKS 201

Query: 78  SWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEE--------------------------- 137
           +WASLFG++S  S+ YTPP ++GDKIVVIP EE                           
Sbjct: 202 TWASLFGTSSEESLFYTPPKAIGDKIVVIPPEEVIDQGIQVWENSLVGQLIDAKLPYAVI 261

Query: 138 -------------ERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCN 197
                        +RRRLSYARVCVEL     M AEITV+LRG DF V+VNYEWKPRKCN
Sbjct: 262 QRLKPISLDFATKKRRRLSYARVCVELEGGSNMSAEITVSLRGVDFNVSVNYEWKPRKCN 321

Query: 198 LCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINS 257
           LC +FGH +  C + VE+K ++EE     V +KG+++     G+VVLE FKQ+E+ EI S
Sbjct: 322 LCCAFGHSSSKCSRSVESKTIQEE-----VVHKGDDVDFELCGEVVLESFKQVEKGEIRS 381

Query: 258 NPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWA 288
           +P R     EK V   ++FTLVTRKK ELV ++D+G+S+EV MPNSFGSL+E+G+ DKWA
Sbjct: 382 SPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRGKSMEVIMPNSFGSLLEVGDADKWA 439

[Close]

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL
Match: A0A5A7SPE5 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold581G00620 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 7.6e-57
Identity = 142/312 (45.51%), Postives = 183/312 (58.65%), Query Frame = 0


Query: 18  NGQFVDGPLIDYGPTKLNDGPAGVDGLDTKNGKEVGEVQNSNGGVMQRRNHGEGNNCPKS 77
           NGQ   GP I+      + G A   G   KN       Q +N       +  + +N  KS
Sbjct: 142 NGQCDFGPRINSADLMKHGGVA--SGSILKN-------QGANVNNFVENDLNKLSNDSKS 201

Query: 78  SWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEE--------------------------- 137
           +WASLFG++S  S+ YTPP ++GDKIVVIP EE                           
Sbjct: 202 TWASLFGTSSEESLFYTPPKAIGDKIVVIPPEEVIDQGIQVWENSLVGQLIDAKLPYAVI 261

Query: 138 -------------ERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCN 197
                        +RRRLSYARVCVEL     M AEITV+LRG DF V+VNYEWKPRKCN
Sbjct: 262 QRLKPISLDFATKKRRRLSYARVCVELEGGSNMSAEITVSLRGVDFNVSVNYEWKPRKCN 321

Query: 198 LCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINS 257
           LC +FGH +  C + VE+K ++EE     V +KG+++     G+VVLE FKQ+E+ EI S
Sbjct: 322 LCCAFGHSSSKCSRSVESKTIQEE-----VVHKGDDVDFELCGEVVLESFKQVEKGEIRS 381

Query: 258 NPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWA 288
           +P R     EK V   ++FTLVTRKK ELV ++D+G+S+EV MPNSFGSL+E+G+ DKWA
Sbjct: 382 SPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRGKSMEVIMPNSFGSLLEVGDADKWA 439

[Close]

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL
Match: A0A5A7V084 (Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold451G00100 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 1.6e-54
Identity = 117/187 (62.57%), Postives = 144/187 (77.01%), Query Frame = 0


Query: 97  TSVGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKC 156
           ++VG  I +    +ERRRLSYARVCV+L+ D  M AEITV+LRG DFIV++NYEWKP KC
Sbjct: 215 SAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPAEITVSLRGVDFIVSINYEWKPWKC 274

Query: 157 NLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEIN 216
           NLC  FGH    C + VE+KV++EE VSKV P+KG+ L S   G+VVLE FKQLEE EI 
Sbjct: 275 NLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGDGLDSEPCGEVVLESFKQLEEGEIR 334

Query: 217 SNPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKW 276
           S+  R     EK V  R+DFTLVTRKKRELVFV+D+G+S+EVTMPN FGSL+E+G+ DKW
Sbjct: 335 SSRNRHSSQVEKEVGKRDDFTLVTRKKRELVFVRDRGKSLEVTMPNFFGSLLEVGDFDKW 394

Query: 277 ALSIVDG 282
           AL+I+DG
Sbjct: 395 ALTIIDG 401

[Close]

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL
Match: A0A5A7V5J2 (Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold387G00210 PE=4 SV=1)

HSP 1 Score: 218.0 bits (554), Expect = 5.1e-53
Identity = 111/191 (58.12%), Postives = 140/191 (73.30%), Query Frame = 0


Query: 99  VGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCNL 158
           VG  I +    +E  RLSYARVCV+L  +  M AEITVNLRG DF V+VNYEWKP+KCNL
Sbjct: 83  VGKPITLDLATKEHSRLSYARVCVKLEGEFNMRAEITVNLRGVDFNVSVNYEWKPQKCNL 142

Query: 159 CRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINSN 218
           C + GH    CP+ VE+K+++EE VSK++P KGE + S     VVLE FKQLEE EI S+
Sbjct: 143 CCAIGHSGGKCPRSVESKIIQEEVVSKIIPGKGEGVDSEPCAKVVLESFKQLEEGEIRSS 202

Query: 219 PIR--PIKEKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWAL 278
           P R     EK V  R++FTLVTRKK ELV V+D+G+S+ V MPNSFGSL+E+G+ DKWAL
Sbjct: 203 PNRHGSHVEKEVGKRDEFTLVTRKKSELVSVRDRGKSIVVAMPNSFGSLLEVGDVDKWAL 262

Query: 279 SIVDGFPPPQQ 288
           ++++G PPP Q
Sbjct: 263 TVIEGSPPPLQ 273

[Close]

BLAST of Chy1G010470.1 vs. NCBI nr
Match: KAA0060724.1 (hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466.1 Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 238 bits (606), Expect = 2.43e-70
Identity = 150/331 (45.32%), Postives = 192/331 (58.01%), Query Frame = 0


Query: 13  SGYVTNGQFVDGPLIDY-------GPTKLNDGPAGVDGLDTKNGKEVGEV-QNSNGGVMQ 72
           SG   +GQ   GPL          G ++LN G      + T  G   G + +N +  V++
Sbjct: 78  SGLKRDGQHSIGPLFGIEEIGKSGGSSELNSGRP----VSTDQGISFGSISKNLSVNVVE 137

Query: 73  RRNHGEGNNCPKSSWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEE-------------- 132
                 G+N   S+WASLFG++   S+ YT P ++GD I+V+P+EE              
Sbjct: 138 NGPKTTGSN---STWASLFGTSPDGSLPYTQPKTIGDNIIVVPSEEVIAQNIRVWENSLV 197

Query: 133 --------------------------------------ERRRLSYARVCVELNVDCPMLA 192
                                                 ERRRLSYARVCV+L+ D  M A
Sbjct: 198 VPVWIRLGRIPMELWTEAGLAVVASAVGKPITLDLATKERRRLSYARVCVKLDGDSHMPA 257

Query: 193 EITVNLRGEDFIVTVNYEWKPRKCNLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGE 252
           EITV+LRG DFIV++NYEWKP KCNLC  FGH    C + VE+KV++EE VSKV P+KG+
Sbjct: 258 EITVSLRGVDFIVSINYEWKPWKCNLCCVFGHSGGKCHRNVESKVIQEEVVSKVSPSKGD 317

Query: 253 ELTSVAYGDVVLEFFKQLEEDEINSNPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDK 281
            L S   G+VVLE FKQLEE EI S+  R     EK V  R+DFTLVTRKKRELVFV+D+
Sbjct: 318 GLDSEPCGEVVLESFKQLEEGEIRSSRNRHSSQVEKEVGKRDDFTLVTRKKRELVFVRDR 377

[Close]

BLAST of Chy1G010470.1 vs. NCBI nr
Match: KAA0047412.1 (putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >TYK14087.1 putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 234 bits (596), Expect = 6.22e-67
Identity = 121/191 (63.35%), Postives = 149/191 (78.01%), Query Frame = 0


Query: 99  VGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKCNL 158
           VG  + +    +ERRRLSYARVCVEL+VD  M AEITVNLRG DFIV VNY+ KPRKCNL
Sbjct: 83  VGKPLTLDLATKERRRLSYARVCVELDVDSHMPAEITVNLRGVDFIVLVNYKLKPRKCNL 142

Query: 159 CRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEINSN 218
           C +FGH +   P+ VE+KVL+EE VSK++P K +EL S   G VVLE FKQLE+ EI S+
Sbjct: 143 CWAFGHSSGKYPRSVESKVLQEEVVSKIIPGKRDELDSETCGGVVLESFKQLEDGEIRSS 202

Query: 219 PIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWAL 278
           P RP    EK V+ R++FTLVTRKKRELV ++D+G+S+EVTMPNSFGSL ++G+ DKWAL
Sbjct: 203 PNRPSSQVEKEVDKRDEFTLVTRKKRELVSIRDRGKSLEVTMPNSFGSLFKVGDVDKWAL 262

Query: 279 SIVDGFPPPQQ 287
           +IV+G PPP Q
Sbjct: 263 TIVEGSPPPSQ 273

[Close]

BLAST of Chy1G010470.1 vs. NCBI nr
Match: TYK28099.1 (uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (586), Expect = 2.08e-64
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 73  NCPKSSWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEE---------------------- 132
           N  KS+WASLFG++S  S+ YTPP ++GDKIVVIP EE                      
Sbjct: 188 NDSKSTWASLFGTSSEESLFYTPPKAIGDKIVVIPPEEVIDQGIQVWENSLVGQLIDAKL 247

Query: 133 ------------------ERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWK 192
                             +RRRLSYARVCVEL     M AEITV+LRG DF V+VNYEWK
Sbjct: 248 PYAVIQRLKPISLDFATKKRRRLSYARVCVELEGGSNMSAEITVSLRGVDFNVSVNYEWK 307

Query: 193 PRKCNLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEE 252
           PRKCNLC +FGH +  C + VE+K ++EE     V +KG+++     G+VVLE FKQ+E+
Sbjct: 308 PRKCNLCCAFGHSSSKCSRSVESKTIQEE-----VVHKGDDVDFELCGEVVLESFKQVEK 367

Query: 253 DEINSNPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGE 287
            EI S+P R     EK V   ++FTLVTRKK ELV ++D+G+S+EV MPNSFGSL+E+G+
Sbjct: 368 GEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRGKSMEVIMPNSFGSLLEVGD 427

[Close]

BLAST of Chy1G010470.1 vs. NCBI nr
Match: KAA0026071.1 (uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa])

HSP 1 Score: 230 bits (586), Expect = 2.08e-64
Identity = 129/257 (50.19%), Postives = 164/257 (63.81%), Query Frame = 0


Query: 73  NCPKSSWASLFGSTSGNSMIYTPPTSVGDKIVVIPTEE---------------------- 132
           N  KS+WASLFG++S  S+ YTPP ++GDKIVVIP EE                      
Sbjct: 188 NDSKSTWASLFGTSSEESLFYTPPKAIGDKIVVIPPEEVIDQGIQVWENSLVGQLIDAKL 247

Query: 133 ------------------ERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWK 192
                             +RRRLSYARVCVEL     M AEITV+LRG DF V+VNYEWK
Sbjct: 248 PYAVIQRLKPISLDFATKKRRRLSYARVCVELEGGSNMSAEITVSLRGVDFNVSVNYEWK 307

Query: 193 PRKCNLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEE 252
           PRKCNLC +FGH +  C + VE+K ++EE     V +KG+++     G+VVLE FKQ+E+
Sbjct: 308 PRKCNLCCAFGHSSSKCSRSVESKTIQEE-----VVHKGDDVDFELCGEVVLESFKQVEK 367

Query: 253 DEINSNPIRPIK--EKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGE 287
            EI S+P R     EK V   ++FTLVTRKK ELV ++D+G+S+EV MPNSFGSL+E+G+
Sbjct: 368 GEIRSSPNRHDSQVEKGVGKSDEFTLVTRKKSELVSIRDRGKSMEVIMPNSFGSLLEVGD 427

[Close]

BLAST of Chy1G010470.1 vs. NCBI nr
Match: XP_004142722.2 (uncharacterized protein LOC101204295 [Cucumis sativus])

HSP 1 Score: 213 bits (543), Expect = 2.59e-63
Identity = 114/191 (59.69%), Postives = 137/191 (71.73%), Query Frame = 0


Query: 97  TSVGDKIVVIPTEEERRRLSYARVCVELNVDCPMLAEITVNLRGEDFIVTVNYEWKPRKC 156
           +++G  + +    +ERR+LS+ARVCVELNV+ PMLAEITVNLR  DFIVTVNYEWKPRKC
Sbjct: 39  SAIGKHLSLDLATKERRKLSFARVCVELNVESPMLAEITVNLRRVDFIVTVNYEWKPRKC 98

Query: 157 NLCRSFGHCNDTCPKIVENKVLREEDVSKVVPNKGEELTSVAYGDVVLEFFKQLEEDEIN 216
           NL R+F HC+  CP+IVENKV  EE+V K                        LEE EIN
Sbjct: 99  NLYRAFRHCSGKCPRIVENKVHHEEEVRK------------------------LEEGEIN 158

Query: 217 SNPIRPIKEKVVENRNDFTLVTRKKRELVFVQDKGESVEVTMPNSFGSLMELGEGDKWAL 276
           S+ IRP KEK V N++DFTLV  KK ELV+V+ KG+SV+VTMPNSFG+LMELG+GDKWAL
Sbjct: 159 SSLIRPTKEKGVGNQDDFTLVIGKKWELVYVRYKGKSVDVTMPNSFGNLMELGKGDKWAL 205

Query: 277 SIVDGFPPPQQ 287
           SIV+G   P Q
Sbjct: 219 SIVEGSALPLQ 205

The following BLAST results are available for this feature:

BLAST of Chy1G010470.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy1G010470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TVB8	1.8e-58	63.35	Putative non-LTR retroelement reverse transcriptase OS=Cucumis melo var. makuwa ...	[more]
A0A5D3DXE4	3.4e-57	45.51	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7SPE5	7.6e-57	45.51	Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1...	[more]
A0A5A7V084	1.6e-54	62.57	Exo_endo_phos domain-containing protein/DUF4283 domain-containing protein OS=Cuc...	[more]
A0A5A7V5J2	5.1e-53	58.12	Non-LTR retroelement reverse transcriptase-like protein OS=Cucumis melo var. mak...	[more]

BLAST of Chy1G010470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060724.1	2.43e-70	45.32	hypothetical protein E6C27_scaffold72G00110 [Cucumis melo var. makuwa] >TYK01466...	[more]
KAA0047412.1	6.22e-67	63.35	putative non-LTR retroelement reverse transcriptase [Cucumis melo var. makuwa] >...	[more]
TYK28099.1	2.08e-64	50.19	uncharacterized protein E5676_scaffold1467G00020 [Cucumis melo var. makuwa]	[more]
KAA0026071.1	2.08e-64	50.19	uncharacterized protein E6C27_scaffold581G00620 [Cucumis melo var. makuwa]	[more]
XP_004142722.2	2.59e-63	59.69	uncharacterized protein LOC101204295 [Cucumis sativus]	[more]

BLAST of Chy1G010470.1 vs. NCBI nr


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..72
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy1G010470	Chy1G010470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G010470.1.exon2	Chy1G010470.1.exon2	exon
Chy1G010470.1.exon1	Chy1G010470.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy1G010470.1.cds2	Chy1G010470.1.cds2	CDS
Chy1G010470.1.cds1	Chy1G010470.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy1G010470.1	Chy1G010470.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016020	membrane