Chy12G213780.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G213780.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	CASP-like protein
Location	chrH12: 12099090 .. 12099302 (-)
Sequence length	213
RNA-Seq Expression	Chy12G213780.1
Synteny	Chy12G213780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGTGAGCCATGCGACGGTTCACCCGGTTGAAGATCCCCCCACTACCGATGGCGCGAATGCGCCTATGGTCAGGATGAAGGACATGGAAGGAATGCCCGGCACCCGGGGAGGACTCGCTTTGCGATTCTTTCAGTTTTTCTTTGCGGCGGCGGCGCTGGGTGTCATGGCTACTACCAGCGATTTCCCTTCTGTTACTGCTTTTTGGTAA

mRNA sequence

ATGAATGTGAGCCATGCGACGGTTCACCCGGTTGAAGATCCCCCCACTACCGATGGCGCGAATGCGCCTATGGTCAGGATGAAGGACATGGAAGGAATGCCCGGCACCCGGGGAGGACTCGCTTTGCGATTCTTTCAGTTTTTCTTTGCGGCGGCGGCGCTGGGTGTCATGGCTACTACCAGCGATTTCCCTTCTGTTACTGCTTTTTGGTAA

Coding sequence (CDS)

ATGAATGTGAGCCATGCGACGGTTCACCCGGTTGAAGATCCCCCCACTACCGATGGCGCGAATGCGCCTATGGTCAGGATGAAGGACATGGAAGGAATGCCCGGCACCCGGGGAGGACTCGCTTTGCGATTCTTTCAGTTTTTCTTTGCGGCGGCGGCGCTGGGTGTCATGGCTACTACCAGCGATTTCCCTTCTGTTACTGCTTTTTGGTAA

Protein sequence

MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATTSDFPSVTAFW*

Homology

[Close]

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot
Match: Q9SKN3 (CASP-like protein 5A2 OS=Arabidopsis thaliana OX=3702 GN=At2g28370 PE=2 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 4.2e-22
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPP--TTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMA 60
          MNVSHA+VHPVEDPP   T+  N P VRM DMEGMPGT  GLALRFFQF FAAAAL VMA
Sbjct: 1  MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query: 61 TTSDFPSVTAF 70
          +TSDFPSVTAF
Sbjct: 61 STSDFPSVTAF 71

[Close]

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot
Match: P0DI70 (CASP-like protein 5A1 OS=Ginkgo biloba OX=3311 GN=gba_locus_10451 PE=3 SV=1)

HSP 1 Score: 83.2 bits (204), Expect = 1.3e-15
Identity = 44/69 (63.77%), Postives = 49/69 (71.01%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MN SH  VHPVE PP TD  +AP VRMKD +GMPGT GGLALR  QF FA  A  +M +T
Sbjct: 1  MNPSHPAVHPVEAPP-TDVHHAPRVRMKDYQGMPGTLGGLALRLGQFCFAVVAFSIMLST 60

Query: 61 SDFPSVTAF 70
           DF +VTAF
Sbjct: 61 DDFSTVTAF 68

[Close]

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot
Match: P0DI68 (CASP-like protein 5A1 OS=Brachypodium distachyon OX=15368 PE=2 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 2.9e-15
Identity = 45/70 (64.29%), Postives = 47/70 (67.14%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPM-VRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMAT 60
          M  S   VHPVE PP TD    P  V MKD+ GMPGT GGL LR  QF FA  AL VMA+
Sbjct: 1  MFASRPAVHPVEAPPPTDPVEQPTGVLMKDLPGMPGTAGGLGLRVAQFVFAGVALAVMAS 60

Query: 61 TSDFPSVTAF 70
          TSDFPSVTAF
Sbjct: 61 TSDFPSVTAF 70

[Close]

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot
Match: Q10Q78 (CASP-like protein 5A1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0206600 PE=2 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 8.5e-15
Identity = 44/70 (62.86%), Postives = 48/70 (68.57%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPM-VRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMAT 60
          M  S   VHPVE PP  D A  P  V MKD+ GMPGT GGL LR  QF FAA AL VMA+
Sbjct: 1  MFASRPAVHPVEAPPPPDPAEQPRGVLMKDLPGMPGTAGGLGLRLAQFAFAAVALAVMAS 60

Query: 61 TSDFPSVTAF 70
          T+DFPSVT+F
Sbjct: 61 TNDFPSVTSF 70

[Close]

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot
Match: P0DI69 (CASP-like protein 5A2 OS=Ginkgo biloba OX=3311 GN=gba_locus_19756 PE=2 SV=1)

HSP 1 Score: 72.4 bits (176), Expect = 2.3e-12
Identity = 36/69 (52.17%), Postives = 44/69 (63.77%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MN SH  VHPV  PP   G   P +RMK+++GMPGT GGL LR  QF FA  A  +M + 
Sbjct: 1  MNASHPAVHPVGVPPAVAGQLPPRMRMKEIQGMPGTIGGLLLRLGQFCFALVAFSIMVSI 60

Query: 61 SDFPSVTAF 70
           +F +VTAF
Sbjct: 61 ENFSTVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL
Match: A0A5D3C7L3 (CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00260 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT
Sbjct: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60

Query: 61 SDFPSVTAF 70
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL
Match: A0A1S3CIU9 (CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500904 PE=3 SV=1)

HSP 1 Score: 140.6 bits (353), Expect = 2.6e-30
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT
Sbjct: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60

Query: 61 SDFPSVTAF 70
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL
Match: A0A6J1HYU4 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469335 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHP EDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQF FAAAAL VMATT
Sbjct: 1  MNVSHATVHPAEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFLFAAAALVVMATT 60

Query: 61 SDFPSVTAF 70
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL
Match: A0A6J1HME3 (CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111464894 PE=3 SV=1)

HSP 1 Score: 133.3 bits (334), Expect = 4.1e-28
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHP EDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQF FAAAAL VMATT
Sbjct: 1  MNVSHATVHPAEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFLFAAAALVVMATT 60

Query: 61 SDFPSVTAF 70
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL
Match: A0A6J1I0G8 (CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111468601 PE=3 SV=1)

HSP 1 Score: 121.3 bits (303), Expect = 1.6e-24
Identity = 61/69 (88.41%), Postives = 63/69 (91.30%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          M+VSHATVHPVEDPPTTDG +AP VRMKDMEGMPGTRGGLALRF QF FAAAAL VMATT
Sbjct: 1  MSVSHATVHPVEDPPTTDGEDAPRVRMKDMEGMPGTRGGLALRFSQFMFAAAALVVMATT 60

Query: 61 SDFPSVTAF 70
          SDFPSV AF
Sbjct: 61 SDFPSVPAF 69

[Close]

BLAST of Chy12G213780.1 vs. NCBI nr
Match: XP_008462581.1 (PREDICTED: CASP-like protein 5A2 [Cucumis melo] >KAA0041694.1 CASP-like protein 5A2 [Cucumis melo var. makuwa] >TYK06316.1 CASP-like protein 5A2 [Cucumis melo var. makuwa])

HSP 1 Score: 139 bits (351), Expect = 3.91e-40
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT
Sbjct: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60

Query: 61 SDFPSVTAF 69
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. NCBI nr
Match: XP_022970342.1 (CASP-like protein 5A2 [Cucurbita maxima])

HSP 1 Score: 132 bits (332), Expect = 2.99e-37
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHP EDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQF FAAAAL VMATT
Sbjct: 1  MNVSHATVHPAEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFLFAAAALVVMATT 60

Query: 61 SDFPSVTAF 69
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. NCBI nr
Match: XP_022964943.1 (CASP-like protein 5A2 [Cucurbita moschata] >XP_023519769.1 CASP-like protein 5A2 [Cucurbita pepo subsp. pepo] >XP_023519770.1 CASP-like protein 5A2 [Cucurbita pepo subsp. pepo] >KAG7019283.1 CASP-like protein 5A2, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 132 bits (332), Expect = 2.99e-37
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHP EDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQF FAAAAL VMATT
Sbjct: 1  MNVSHATVHPAEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFLFAAAALVVMATT 60

Query: 61 SDFPSVTAF 69
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. NCBI nr
Match: KAG6583581.1 (CASP-like protein 5A2, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 132 bits (332), Expect = 9.91e-37
Identity = 66/69 (95.65%), Postives = 66/69 (95.65%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHATVHP EDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQF FAAAAL VMATT
Sbjct: 1  MNVSHATVHPAEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFLFAAAALVVMATT 60

Query: 61 SDFPSVTAF 69
          SDFPSVTAF
Sbjct: 61 SDFPSVTAF 69

[Close]

BLAST of Chy12G213780.1 vs. NCBI nr
Match: XP_038894237.1 (CASP-like protein 5A2 [Benincasa hispida])

HSP 1 Score: 130 bits (328), Expect = 1.21e-36
Identity = 65/69 (94.20%), Postives = 67/69 (97.10%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMATT 60
          MNVSHA+VHPVEDPPTTDGANAPMVRMKD EGMPGTRGGLALRFFQFFFAAAAL VMATT
Sbjct: 1  MNVSHASVHPVEDPPTTDGANAPMVRMKDTEGMPGTRGGLALRFFQFFFAAAALVVMATT 60

Query: 61 SDFPSVTAF 69
          SDFPSV+AF
Sbjct: 61 SDFPSVSAF 69

[Close]

BLAST of Chy12G213780.1 vs. TAIR 10
Match: AT2G28370.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 104.8 bits (260), Expect = 3.0e-23
Identity = 56/71 (78.87%), Postives = 59/71 (83.10%), Query Frame = 0


Query: 1  MNVSHATVHPVEDPP--TTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVMA 60
          MNVSHA+VHPVEDPP   T+  N P VRM DMEGMPGT  GLALRFFQF FAAAAL VMA
Sbjct: 1  MNVSHASVHPVEDPPAAATEVENPPRVRMDDMEGMPGTLLGLALRFFQFLFAAAALCVMA 60

Query: 61 TTSDFPSVTAF 70
          +TSDFPSVTAF
Sbjct: 61 STSDFPSVTAF 71

[Close]

BLAST of Chy12G213780.1 vs. TAIR 10
Match: AT2G37200.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 71.2 bits (173), Expect = 3.7e-13
Identity = 39/72 (54.17%), Postives = 46/72 (63.89%), Query Frame = 0


Query: 1  MNVSHATVHPVED---PPTTDGANAPMVRMKDMEGMPGTRGGLALRFFQFFFAAAALGVM 60
          MNVS   +HPV+     PT    + P VRMKD++GMPGT GGL LR  QF  A  ++ VM
Sbjct: 2  MNVSRPAIHPVDALPVAPTAGAIDRPPVRMKDVQGMPGTTGGLILRLSQFVPALISVSVM 61

Query: 61 ATTSDFPSVTAF 70
           TTSDF S TAF
Sbjct: 62 VTTSDFRSATAF 73

[Close]

BLAST of Chy12G213780.1 vs. TAIR 10
Match: AT5G02060.1 (Uncharacterised protein family (UPF0497) )

HSP 1 Score: 42.7 bits (99), Expect = 1.4e-04
Identity = 23/43 (53.49%), Postives = 28/43 (65.12%), Query Frame = 0


Query: 27 MKDMEGMPGTRGGLALRFFQFFFAAAALGVMATTSDFPSVTAF 70
          MK M G PGT  GL LR  Q   AAA++GVM ++ DF + TAF
Sbjct: 1  MKKMIGSPGTMSGLILRLGQCATAAASIGVMVSSYDFSNYTAF 43

The following BLAST results are available for this feature:

BLAST of Chy12G213780.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SKN3	4.2e-22	78.87	CASP-like protein 5A2 OS=Arabidopsis thaliana OX=3702 GN=At2g28370 PE=2 SV=1	[more]
P0DI70	1.3e-15	63.77	CASP-like protein 5A1 OS=Ginkgo biloba OX=3311 GN=gba_locus_10451 PE=3 SV=1	[more]
P0DI68	2.9e-15	64.29	CASP-like protein 5A1 OS=Brachypodium distachyon OX=15368 PE=2 SV=1	[more]
Q10Q78	8.5e-15	62.86	CASP-like protein 5A1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0206600 P...	[more]
P0DI69	2.3e-12	52.17	CASP-like protein 5A2 OS=Ginkgo biloba OX=3311 GN=gba_locus_19756 PE=2 SV=1	[more]

BLAST of Chy12G213780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3C7L3	2.6e-30	100.00	CASP-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold594G00...	[more]
A0A1S3CIU9	2.6e-30	100.00	CASP-like protein OS=Cucumis melo OX=3656 GN=LOC103500904 PE=3 SV=1	[more]
A0A6J1HYU4	4.1e-28	95.65	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111469335 PE=3 SV=1	[more]
A0A6J1HME3	4.1e-28	95.65	CASP-like protein OS=Cucurbita moschata OX=3662 GN=LOC111464894 PE=3 SV=1	[more]
A0A6J1I0G8	1.6e-24	88.41	CASP-like protein OS=Cucurbita maxima OX=3661 GN=LOC111468601 PE=3 SV=1	[more]

BLAST of Chy12G213780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008462581.1	3.91e-40	100.00	PREDICTED: CASP-like protein 5A2 [Cucumis melo] >KAA0041694.1 CASP-like protein ...	[more]
XP_022970342.1	2.99e-37	95.65	CASP-like protein 5A2 [Cucurbita maxima]	[more]
XP_022964943.1	2.99e-37	95.65	CASP-like protein 5A2 [Cucurbita moschata] >XP_023519769.1 CASP-like protein 5A2...	[more]
KAG6583581.1	9.91e-37	95.65	CASP-like protein 5A2, partial [Cucurbita argyrosperma subsp. sororia]	[more]
XP_038894237.1	1.21e-36	94.20	CASP-like protein 5A2 [Benincasa hispida]	[more]

BLAST of Chy12G213780.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G28370.1	3.0e-23	78.87	Uncharacterised protein family (UPF0497)	[more]
AT2G37200.1	3.7e-13	54.17	Uncharacterised protein family (UPF0497)	[more]
AT5G02060.1	1.4e-04	53.49	Uncharacterised protein family (UPF0497)	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..23
None	No IPR available	PANTHER	PTHR32021:SF16	CASP-LIKE PROTEIN 5A2	coord: 14..69
IPR045009	CASP-like protein 5	PANTHER	PTHR32021	CASP-LIKE PROTEIN 5B3	coord: 14..69

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G213780	Chy12G213780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213780.1.exon1	Chy12G213780.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213780.1.cds1	Chy12G213780.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G213780.1	Chy12G213780.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005886	plasma membrane