Chy12G213420.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G213420.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Pentatricopeptide repeat-containing protein
Location	chrH12: 11349227 .. 11350696 (-)
Sequence length	1470
RNA-Seq Expression	Chy12G213420.1
Synteny	Chy12G213420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTCCATTGTCTCAGCAACTTCAGCGTCTTCCATTCTGGGGAAAGGAAATGGAGGAATTGGCTGCCAAAATACAATGGTTCATTTCAAGGCAAACTCCAGAAGACGCCCACCTAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTAACCCTGCCGTCAACCAATTCTTGAAGAACAAAACCTCTATCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGACTATACTAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCGTCACTCTTCCAAGGGAGGATTCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATTCGCCCAACAACAGTGGTGTCTTCCCGTGCTTTGCTGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCTAGGGCAATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGCACAGGAACAACATCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACTGTTGAGGTCCTTTCAAGGAACCATGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTAGTAGCTGCAAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTGGTAAAAACCCTGATAAAAACGGGTTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAACAAGATTGTACAACTATAGTTAAGGTCTGCACAAGGCTTGGTAAATTTGAAATTGCTGAGAAACTTTATAGCTGGTATGTTGAATCTGGACATGAACCGAGTATAGTTATGTATACTGCCTTGGTTCATAGTCGCTACTCAGACAGGAAATATAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGTCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTTCCCCTACATATGATGTATATAGGAAGATGATCACCATTTATTTAGTCTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCCGAGAATGCTGGATTTAGGATGGATAAACAAATTACTTCAATGTTGTTGCAAGCAAAAAGATGA

mRNA sequence

ATGGATTCCATTGTCTCAGCAACTTCAGCGTCTTCCATTCTGGGGAAAGGAAATGGAGGAATTGGCTGCCAAAATACAATGGTTCATTTCAAGGCAAACTCCAGAAGACGCCCACCTAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTAACCCTGCCGTCAACCAATTCTTGAAGAACAAAACCTCTATCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGACTATACTAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCGTCACTCTTCCAAGGGAGGATTCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATTCGCCCAACAACAGTGGTGTCTTCCCGTGCTTTGCTGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCTAGGGCAATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGCACAGGAACAACATCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACTGTTGAGGTCCTTTCAAGGAACCATGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTAGTAGCTGCAAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTGGTAAAAACCCTGATAAAAACGGGTTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAACAAGATTGTACAACTATAGTTAAGGTCTGCACAAGGCTTGGTAAATTTGAAATTGCTGAGAAACTTTATAGCTGGTATGTTGAATCTGGACATGAACCGAGTATAGTTATGTATACTGCCTTGGTTCATAGTCGCTACTCAGACAGGAAATATAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGTCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTTCCCCTACATATGATGTATATAGGAAGATGATCACCATTTATTTAGTCTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCCGAGAATGCTGGATTTAGGATGGATAAACAAATTACTTCAATGTTGTTGCAAGCAAAAAGATGA

Coding sequence (CDS)

ATGGATTCCATTGTCTCAGCAACTTCAGCGTCTTCCATTCTGGGGAAAGGAAATGGAGGAATTGGCTGCCAAAATACAATGGTTCATTTCAAGGCAAACTCCAGAAGACGCCCACCTAAAAACCTCCTCTGTCCACGACGGGCCAAGCTTCCTCCTAACCCTGCCGTCAACCAATTCTTGAAGAACAAAACCTCTATCCCTTCCCCATCCTTCACCGATTTGATTTCCTCTAAGATTTTCCAAGATGAGCATGAAGAAATCCATGCTTATGACTATACTAAGGATACTGATGTTGTTTGGGATTCAGATGAAATTGAAGCTATTTCGTCACTCTTCCAAGGGAGGATTCCTCAGAAACCTGGTAAATTGAATCGGGAGAGACCTCTTCCTCTCCCACTTCCTCACAAGCTACGACCACCAAGACTTCCTAACCCTAAAATTCGCCCAACAACAGTGGTGTCTTCCCGTGCTTTGCTGTCTAAGCAAGTCTACAAGTGTCCTGATTTTCTTATTGGCCTTGCTAGGGCAATTAGAGATCTATCCCCAGAGGAAAATGTGTCCAAGGTTCTCAATCGGTGGGGTCCGTTTTTGCAGAAGGGATCTCTTTCATTGACAATCAAGGAACTAGGGCATATGGGTCTTCCTGATAGAGCTCTAAAGACGTTCTGTTGGGCACAGGAACAACATCGACTCTTTCCAGATGATCGTGTTTTGGCCTCAACTGTTGAGGTCCTTTCAAGGAACCATGAACTGAAGGTACCTGTAAACTTGGAAGAGTTCACTAAACTTGCAAGTCGTGGTGTGCTCGAGGCAATGATGAGAGGGTTTATCAAAGGTGGGAGCTTAAATCTTGCTTGGAAGCTTCTAGTAGCTGCAAAGAAGGGTAAGAGAATGTTGGATCCCAGCGTCTATGTGAAGTTGATATTGGAGCTTGGTAAAAACCCTGATAAAAACGGGTTGGTTCTTACCTTACTGGAAGAGCTAGGACAAAGGGAAGCCTTGAAGTTAAACCAACAAGATTGTACAACTATAGTTAAGGTCTGCACAAGGCTTGGTAAATTTGAAATTGCTGAGAAACTTTATAGCTGGTATGTTGAATCTGGACATGAACCGAGTATAGTTATGTATACTGCCTTGGTTCATAGTCGCTACTCAGACAGGAAATATAGGGAGGCATTATCTTTAGTGTGGGAAATGGAGTCTGCAAACTGTCCTTTTGATCTTCCTGCTTATAGTGTAGTGATAAAGCTTTTTGTTGCTCTTGGTGATCTTTCAAGGGCTGTTAGATACTTTGCAAAGCTTAAGGAAGCTGGTTTTTCCCCTACATATGATGTATATAGGAAGATGATCACCATTTATTTAGTCTCAGGGAGGTTAGCCAAGTGTAAGGAAATTTATAAGGAAGCCGAGAATGCTGGATTTAGGATGGATAAACAAATTACTTCAATGTTGTTGCAAGCAAAAAGATGA

Protein sequence

MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFLKNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQITSMLLQAKR*

Homology

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BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot
Match: Q5XET4 (Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX=3702 GN=EMB975 PE=2 SV=1)

HSP 1 Score: 504.2 bits (1297), Expect = 1.6e-141
Identity = 268/476 (56.30%), Postives = 345/476 (72.48%), Query Frame = 0


Query: 17  GNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFLKNKTSIPSPSFTDLIS 76
           GN G+   N     + N  ++  KNL  PRR KLPP+  VN FL+             I 
Sbjct: 23  GNIGVTRVNAS---QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPK----------IE 82

Query: 77  SKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHK 136
             +  D+ E++       D  VVW+ +EIEAISSLFQ RIPQKP K +R RPLPLP PHK
Sbjct: 83  PLVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHK 142

Query: 137 LRPPRLPNPKIRPTTVVSSRAL--LSKQVYKCPDFLIGLARAIRDL-SPEENVSKVLNRW 196
           LRP  LP PK     ++ S AL  +SKQVYK P FLIGLAR I+ L S + +VS VLN+W
Sbjct: 143 LRPLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKW 202

Query: 197 GPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLASTVEVLSRNHELKV 256
             FL+KGSLS TI+ELGHMGLP+RAL+T+ WA++   L PD+R+LAST++VL+++HELK+
Sbjct: 203 VSFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL 262

Query: 257 PVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELGK 316
              L+    LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ K
Sbjct: 263 ---LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAK 322

Query: 317 NPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSWYVESGHEPSI 376
           NPDK  LV+ LLEEL +RE LKL+QQDCT+I+K+C +LG+FE+ E L+ W+  S  EPS+
Sbjct: 323 NPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSV 382

Query: 377 VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGDLSRAVRYFAK 436
           VMYT ++HSRYS++KYREA+S+VWEME +NC  DLPAY VVIKLFVAL DL RA+RY++K
Sbjct: 383 VMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSK 442

Query: 437 LKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQITSMLLQAKR 490
           LKEAGFSPTYD+YR MI++Y  SGRL KCKEI KE E+AG R+DK  +  LLQ ++
Sbjct: 443 LKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

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BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot
Match: Q9S7Q2 (Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PTAC2 PE=2 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 1.5e-14
Identity = 72/323 (22.29%), Postives = 148/323 (45.82%), Query Frame = 0


Query: 173 LARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLF 232
           L   +  L P  ++++ L+ +   L     +L  KE    G   R+L+ F + Q Q    
Sbjct: 79  LINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCK 138

Query: 233 PDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGV------LEAMMRGFIKGGSLNLAW 292
           P++ +    + +L R  E  +   LE F ++ S+GV        A++  + + G    + 
Sbjct: 139 PNEHIYTIMISLLGR--EGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 198

Query: 293 KLLVAAKKGKRMLDPSV--YVKLILELGKNP-DKNGLVLTLLEELGQREALKLNQQDCTT 352
           +LL   K  K  + PS+  Y  +I    +   D  GL L L  E+ + E ++ +     T
Sbjct: 199 ELLDRMKNEK--ISPSILTYNTVINACARGGLDWEGL-LGLFAEM-RHEGIQPDIVTYNT 258

Query: 353 IVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESAN 412
           ++  C   G  + AE ++    + G  P +  Y+ LV +    R+  +   L+ EM S  
Sbjct: 259 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGG 318

Query: 413 CPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCK 472
              D+ +Y+V+++ +   G +  A+  F +++ AG +P  + Y  ++ ++  SGR    +
Sbjct: 319 SLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVR 378

Query: 473 EIYKEAENAGFRMDKQITSMLLQ 487
           +++ E +++    D    ++L++
Sbjct: 379 QLFLEMKSSNTDPDAATYNILIE 395

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BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot
Match: O64624 (Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At2g18940 PE=2 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 8.5e-13
Identity = 71/290 (24.48%), Postives = 126/290 (43.45%), Query Frame = 0


Query: 197 LQKGSLSLTIKELGHMGLPDRALKTFCW---AQEQHRLFPDDRVLASTVEVLSRNHELKV 256
           L +  L   +K L   G  +RA+  F W   +     L  D +V+   V +L R  +  V
Sbjct: 134 LLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSV 193

Query: 257 ------PVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPS---VY 316
                  + L+E+  L        ++  + + G    A  L    K+    + PS   V 
Sbjct: 194 AAKLLDKIPLQEY--LLDVRAYTTILHAYSRTGKYEKAIDLFERMKE----MGPSPTLVT 253

Query: 317 VKLILEL-GKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSW 376
             +IL++ GK       +L +L+E+ + + LK ++  C+T++  C R G    A++ ++ 
Sbjct: 254 YNVILDVFGKMGRSWRKILGVLDEM-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAE 313

Query: 377 YVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGD 436
               G+EP  V Y AL+        Y EALS++ EME  +CP D   Y+ ++  +V  G 
Sbjct: 314 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGF 373

Query: 437 LSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAG 474
              A      + + G  P    Y  +I  Y  +G+  +  +++   + AG
Sbjct: 374 SKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416

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BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot
Match: Q66GP4 (Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At5g13770 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 6.1e-11
Identity = 62/237 (26.16%), Postives = 108/237 (45.57%), Query Frame = 0


Query: 257 LEEFTKLASRGVLEA------MMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILE 316
           LE   ++  +G+ E+      ++R F +   + +  KL   A   K + DP + +K++L 
Sbjct: 268 LEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLM 327

Query: 317 LGKNPDKNGLVLTLLEELGQREALKLNQQDC--TTIVKVCTRLGKFEIAEKLYSWYVESG 376
                 + G + T LE +      +L   DC    IV   ++   F  A K+Y W ++  
Sbjct: 328 Y----VREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEE 387

Query: 377 HEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGDLSRAV 436
            E   V Y   +++     KY +A  L  EM        + AYS ++ ++     LS AV
Sbjct: 388 CEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAV 447

Query: 437 RYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDK-QITSML 485
           R  AK+K+ G  P   +Y  +I ++  +  L + ++I+KE + A    DK   TSM+
Sbjct: 448 RLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMI 500

[Close]

BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot
Match: Q8GZ63 (Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX=3702 GN=At5g25630 PE=2 SV=2)

HSP 1 Score: 69.3 bits (168), Expect = 1.4e-10
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 342 TTIVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMES 401
           T ++ V    G+   A+ ++    E+GH PS++ YT L+ +    ++Y    S+V E+E 
Sbjct: 49  TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108

Query: 402 ANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAK 461
           +    D   ++ VI  F   G++  AV+   K+KE G +PT   Y  +I  Y ++G+  +
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPER 168

Query: 462 CKEI 466
             E+
Sbjct: 169 SSEL 172

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BLAST of Chy12G213420.1 vs. ExPASy TrEMBL
Match: A0A0A0LVM0 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1)

HSP 1 Score: 934.9 bits (2415), Expect = 1.4e-268
Identity = 472/489 (96.52%), Postives = 475/489 (97.14%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDSIVSATS SSIL KGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQF 
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFF 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSP FTDLISSKIFQDEHEEIHA+DYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPPFTDLISSKIFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYK PDFLIGLAR IRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCWAQEQHRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKV VNLEEFTKLASRGVLEAMMRGFI+GGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMES NCPFDLPAYSVVIKLFVA
Sbjct: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQI 480
           LGDLSRAVRYFAKLKEAGFSPTY+VYR MITIYLVSGRLAKCKEIYKEAENAGF MDKQI
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAGFMMDKQI 480

Query: 481 TSMLLQAKR 490
           TSMLLQAKR
Sbjct: 481 TSMLLQAKR 489

[Close]

BLAST of Chy12G213420.1 vs. ExPASy TrEMBL
Match: A0A1S3CGD0 (pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN=LOC103500594 PE=4 SV=1)

HSP 1 Score: 919.8 bits (2376), Expect = 4.6e-264
Identity = 467/489 (95.50%), Postives = 472/489 (96.52%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           M SIVSATS SSIL KGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYK PDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQD TTI+KVCTRL KFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           Y WYVESGHEPS+VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAY+VVIKLFVA
Sbjct: 361 YCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQI 480
           LGDLSRAVRYFAKLKEAGFSPTYDVYR MITIYLVSGRLAK KEIYKEAENAGF MDKQI
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSGRLAKSKEIYKEAENAGFIMDKQI 480

Query: 481 TSMLLQAKR 490
           TSMLLQAKR
Sbjct: 481 TSMLLQAKR 489

[Close]

BLAST of Chy12G213420.1 vs. ExPASy TrEMBL
Match: A0A5D3BQZ3 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1371G00260 PE=4 SV=1)

HSP 1 Score: 864.8 bits (2233), Expect = 1.8e-247
Identity = 437/457 (95.62%), Postives = 442/457 (96.72%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           M SIVSATS SSIL KGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYK PDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQD TTI+KVCTRL KFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           Y WYVESGHEPS+VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAY+VVIKLFVA
Sbjct: 361 YCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSG 458
           LGDLSRAVRYFAKLKEAGFSPTYDVYR MITIYLVSG
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSG 457

[Close]

BLAST of Chy12G213420.1 vs. ExPASy TrEMBL
Match: A0A6J1GIP2 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita moschata OX=3662 GN=LOC111454537 PE=4 SV=1)

HSP 1 Score: 789.6 bits (2038), Expect = 7.2e-225
Identity = 406/501 (81.04%), Postives = 440/501 (87.82%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDS+ S T+ SSIL K NGGI CQ  + HF+ NSRRRPPKNLL PRR KLPP+P VNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KNKTSIPSP--SFTDLISSKIF------QDEHEEIHAYDY----TKDTDVVWDSDEIEAI 120
           K +TS P P  SF DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SKQVYK PD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQ 240
           FLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QEQ
Sbjct: 181 FLIGLARAIRDLKPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 HRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKKGKRMLDPSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVC 360
           LVAAK GKRMLDPSVYVKLILE+GKNPDKN LVL LL+ELGQREAL LNQQD + I+KV 
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPS+VMYTALVH+RYS+RKYREALS+VWEME+AN PFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANSPFDL 420

Query: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGF+PTY +YR +ITIYL +GRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGFRMDKQITSMLLQAKR 490
           AENAG+ MDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Chy12G213420.1 vs. ExPASy TrEMBL
Match: A0A6J1KK31 (pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita maxima OX=3661 GN=LOC111495984 PE=4 SV=1)

HSP 1 Score: 786.2 bits (2029), Expect = 8.0e-224
Identity = 403/501 (80.44%), Postives = 438/501 (87.43%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDS+ S T+ SSIL K NGGI CQ  M HF  NS+RRPPKNLL PRR KLPP+P VNQFL
Sbjct: 1   MDSLFSTTAVSSILVKRNGGISCQIPMAHFLTNSKRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KNKTSIPSP--SFTDLISSKIF------QDEHEEIHAYDY----TKDTDVVWDSDEIEAI 120
           K +TS P P  S+ DLI S+         DE EE  A +Y      D+D+VWD +EIEAI
Sbjct: 61  KKRTSDPHPDTSYPDLIPSEKIGLPEEELDELEETAADNYFANDDNDSDIVWDPEEIEAI 120

Query: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SKQVYK PD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQ 240
           FLIGLARAIRDL PEENVSKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QEQ
Sbjct: 181 FLIGLARAIRDLQPEENVSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 HRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKKGKRMLDPSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVC 360
           LVAAK GKRMLDPSV+VKLILE+GKNPDKN LVL LL+ELGQREAL L+QQD + I+KV 
Sbjct: 301 LVAAKNGKRMLDPSVHVKLILEIGKNPDKNMLVLALLDELGQREALNLSQQDTSAIIKVS 360

Query: 361 TRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDL 420
           TRLGKFEIAEKLYSWYVESGHEPS+VMYTALVH+RYS+RKYREALS+VWEME+ANCPFDL
Sbjct: 361 TRLGKFEIAEKLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKE 480
           PAYSVVIKLFVALGDLSRAVRYFAKLKEAGF+PTY +YR +ITIYL +GRLAKCKEIYKE
Sbjct: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGFRMDKQITSMLLQAKR 490
           AENAG+ MDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Chy12G213420.1 vs. NCBI nr
Match: XP_004139567.1 (pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_011654198.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_031739920.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_031739926.1 pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >KGN64877.1 hypothetical protein Csa_022712 [Cucumis sativus])

HSP 1 Score: 929 bits (2401), Expect = 0.0
Identity = 472/489 (96.52%), Postives = 475/489 (97.14%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDSIVSATS SSIL KGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQF 
Sbjct: 1   MDSIVSATSVSSILVKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFF 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSP FTDLISSKIFQDEHEEIHA+DYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPPFTDLISSKIFQDEHEEIHAHDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYK PDFLIGLAR IRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKRPDFLIGLAREIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRAL TFCWAQEQHRLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALNTFCWAQEQHRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKV VNLEEFTKLASRGVLEAMMRGFI+GGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVAVNLEEFTKLASRGVLEAMMRGFIRGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNMLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMES NCPFDLPAYSVVIKLFVA
Sbjct: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESGNCPFDLPAYSVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQI 480
           LGDLSRAVRYFAKLKEAGFSPTY+VYR MITIYLVSGRLAKCKEIYKEAENAGF MDKQI
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYNVYRNMITIYLVSGRLAKCKEIYKEAENAGFMMDKQI 480

Query: 481 TSMLLQAKR 489
           TSMLLQAKR
Sbjct: 481 TSMLLQAKR 489

[Close]

BLAST of Chy12G213420.1 vs. NCBI nr
Match: XP_008462173.1 (PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462181.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_008462189.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902994.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] >XP_016902996.1 PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo])

HSP 1 Score: 914 bits (2362), Expect = 0.0
Identity = 467/489 (95.50%), Postives = 472/489 (96.52%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           M SIVSATS SSIL KGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYK PDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQD TTI+KVCTRL KFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           Y WYVESGHEPS+VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAY+VVIKLFVA
Sbjct: 361 YCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQI 480
           LGDLSRAVRYFAKLKEAGFSPTYDVYR MITIYLVSGRLAK KEIYKEAENAGF MDKQI
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSGRLAKSKEIYKEAENAGFIMDKQI 480

Query: 481 TSMLLQAKR 489
           TSMLLQAKR
Sbjct: 481 TSMLLQAKR 489

[Close]

BLAST of Chy12G213420.1 vs. NCBI nr
Match: XP_038893977.1 (pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida] >XP_038893978.1 pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida])

HSP 1 Score: 872 bits (2252), Expect = 0.0
Identity = 449/495 (90.71%), Postives = 466/495 (94.14%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDSI SATS SSIL KGNGGIGCQ TM HFK NSRRR PKNLLCPRRAKLPP+PAVNQFL
Sbjct: 1   MDSIFSATSVSSILVKGNGGIGCQATMAHFKTNSRRRLPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KNKTSIPSPSFTDLISSKIFQ------DEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQG 120
           KNKTS PSPS TDLISS+IFQ      DEHEEIHAYDY KDTDVVWDSDEIEAISSLFQG
Sbjct: 61  KNKTSAPSPSLTDLISSEIFQLPKGEDDEHEEIHAYDY-KDTDVVWDSDEIEAISSLFQG 120

Query: 121 RIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLA 180
           RIPQKPGKLNR+RPLPLPLPHKLRP  LP+PKIRP  +VSSRALLSKQVYK PDFLIGLA
Sbjct: 121 RIPQKPGKLNRDRPLPLPLPHKLRPSGLPDPKIRPRIMVSSRALLSKQVYKRPDFLIGLA 180

Query: 181 RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPD 240
           RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTF WAQEQ RLFPD
Sbjct: 181 RAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFSWAQEQPRLFPD 240

Query: 241 DRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKK 300
           DRVLASTVEVL+RNHELKVP++LEEFTKLASRGVLEAM+RGFIKGGSLNLAWKLLVAAKK
Sbjct: 241 DRVLASTVEVLARNHELKVPLDLEEFTKLASRGVLEAMVRGFIKGGSLNLAWKLLVAAKK 300

Query: 301 GKRMLDPSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKF 360
            KR+LDPSVYVKLILELGKNPDKN LVLTLL+ELGQREAL LNQQD TTI+KVCTRLGKF
Sbjct: 301 RKRLLDPSVYVKLILELGKNPDKNVLVLTLLDELGQREALTLNQQDTTTIIKVCTRLGKF 360

Query: 361 EIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVV 420
           EIAEKLYSWYVESGHEPS+VMYTALVHSRYSDRKYREALSLVWEME+ANCPFDLPAYSV+
Sbjct: 361 EIAEKLYSWYVESGHEPSVVMYTALVHSRYSDRKYREALSLVWEMEAANCPFDLPAYSVM 420

Query: 421 IKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGF 480
           IKLFV LGDLSRAVRYFAKLKEAGF+PTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGF
Sbjct: 421 IKLFVTLGDLSRAVRYFAKLKEAGFAPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGF 480

Query: 481 RMDKQITSMLLQAKR 489
            MDKQITSMLLQ+KR
Sbjct: 481 IMDKQITSMLLQSKR 494

[Close]

BLAST of Chy12G213420.1 vs. NCBI nr
Match: KAA0052071.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00686.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 859 bits (2220), Expect = 6.95e-312
Identity = 437/457 (95.62%), Postives = 442/457 (96.72%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           M SIVSATS SSIL KGNGGIGCQ TMVHFKANSRRRPPKNLLCPRRAKLPP+PAVNQFL
Sbjct: 1   MHSIVSATSVSSILVKGNGGIGCQITMVHFKANSRRRPPKNLLCPRRAKLPPDPAVNQFL 60

Query: 61  KNKTSIPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120
            NKTS PSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP
Sbjct: 61  NNKTSAPSPSFTDLISSKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKP 120

Query: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPDFLIGLARAIRDL 180
           GKLNRERPLPLPLPHKLRPPRLPNPKIRPTT VSSRALLSK+VYK PDFLIGLARAIRDL
Sbjct: 121 GKLNRERPLPLPLPHKLRPPRLPNPKIRPTTTVSSRALLSKKVYKRPDFLIGLARAIRDL 180

Query: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLAS 240
           SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCW QEQ RLFPDDRVLAS
Sbjct: 181 SPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWVQEQRRLFPDDRVLAS 240

Query: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300
           TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD
Sbjct: 241 TVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLD 300

Query: 301 PSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKL 360
           PSVYVKLILELGKNPDKN LVLTLLEELGQREALKLNQQD TTI+KVCTRL KFEIAEKL
Sbjct: 301 PSVYVKLILELGKNPDKNVLVLTLLEELGQREALKLNQQDSTTIIKVCTRLRKFEIAEKL 360

Query: 361 YSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVA 420
           Y WYVESGHEPS+VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAY+VVIKLFVA
Sbjct: 361 YCWYVESGHEPSMVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYNVVIKLFVA 420

Query: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSG 457
           LGDLSRAVRYFAKLKEAGFSPTYDVYR MITIYLVSG
Sbjct: 421 LGDLSRAVRYFAKLKEAGFSPTYDVYRNMITIYLVSG 457

[Close]

BLAST of Chy12G213420.1 vs. NCBI nr
Match: KAG7020726.1 (Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 786 bits (2031), Expect = 1.41e-283
Identity = 406/501 (81.04%), Postives = 441/501 (88.02%), Query Frame = 0


Query: 1   MDSIVSATSASSILGKGNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFL 60
           MDS+ S T+ SSIL K NGGI CQ  + HF+ NSRRRPPKNLL PRR KLPP+P VNQFL
Sbjct: 1   MDSLFSTTTISSILVKRNGGISCQIPVAHFQTNSRRRPPKNLLYPRRTKLPPDPGVNQFL 60

Query: 61  KNKTSIPSP--SFTDLISSKIFQ------DEHEEIHAYDY----TKDTDVVWDSDEIEAI 120
           K +TS P P  SF DLISS+         DE EE  A +Y      D+DVVWDS+EIEAI
Sbjct: 61  KKRTSGPQPDTSFPDLISSEKIGLPEEELDEIEETAADNYFANDDNDSDVVWDSEEIEAI 120

Query: 121 SSLFQGRIPQKPGKLNRERPLPLPLPHKLRPPRLPNPKIRPTTVVSSRALLSKQVYKCPD 180
           +SLF+GRIPQKPGKLNRERPLPLPLPHKLRPP LPNPKIRP T VSSRAL+SKQVYK PD
Sbjct: 121 TSLFRGRIPQKPGKLNRERPLPLPLPHKLRPPGLPNPKIRPRTAVSSRALMSKQVYKRPD 180

Query: 181 FLIGLARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQ 240
           FLIGLARAIRDL PEEN+SKVLNRW PFLQKGSLSLTIKELGHMGL DRALKTFCW QEQ
Sbjct: 181 FLIGLARAIRDLKPEENMSKVLNRWAPFLQKGSLSLTIKELGHMGLADRALKTFCWVQEQ 240

Query: 241 HRLFPDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKL 300
            RL+PDDRVLASTVEVL+RNHELK+P NL+EFTKLASRGVLEAMMRGFIKGG L+LAWKL
Sbjct: 241 PRLYPDDRVLASTVEVLARNHELKIPFNLDEFTKLASRGVLEAMMRGFIKGGRLSLAWKL 300

Query: 301 LVAAKKGKRMLDPSVYVKLILELGKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVC 360
           LVAAK GKRMLDPSVYVKLILE+GKNPDKN LVL LL+ELGQREAL LNQQD + I+KV 
Sbjct: 301 LVAAKNGKRMLDPSVYVKLILEIGKNPDKNMLVLALLDELGQREALNLNQQDTSAIIKVS 360

Query: 361 TRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDL 420
           TRLGKFEIAE+LYSWYVESGHEPS+VMYTALVH+RYS+RKYREALS+VWEME+ANCPFDL
Sbjct: 361 TRLGKFEIAERLYSWYVESGHEPSVVMYTALVHNRYSERKYREALSVVWEMEAANCPFDL 420

Query: 421 PAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKE 480
           PAYSVV+KLFVALGDLSRAVRYFAKLKEAGF+PTY +YR +ITIYL +GRLAKCKEIYKE
Sbjct: 421 PAYSVVMKLFVALGDLSRAVRYFAKLKEAGFTPTYCIYRNLITIYLAAGRLAKCKEIYKE 480

Query: 481 AENAGFRMDKQITSMLLQAKR 489
           AENAG+ MDKQITSMLLQAKR
Sbjct: 481 AENAGYVMDKQITSMLLQAKR 501

[Close]

BLAST of Chy12G213420.1 vs. TAIR 10
Match: AT2G01860.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 504.2 bits (1297), Expect = 1.2e-142
Identity = 268/476 (56.30%), Postives = 345/476 (72.48%), Query Frame = 0


Query: 17  GNGGIGCQNTMVHFKANSRRRPPKNLLCPRRAKLPPNPAVNQFLKNKTSIPSPSFTDLIS 76
           GN G+   N     + N  ++  KNL  PRR KLPP+  VN FL+             I 
Sbjct: 23  GNIGVTRVNAS---QRNHSKKLTKNLRNPRRTKLPPDFGVNLFLRKPK----------IE 82

Query: 77  SKIFQDEHEEIHAYDYTKDTDVVWDSDEIEAISSLFQGRIPQKPGKLNRERPLPLPLPHK 136
             +  D+ E++       D  VVW+ +EIEAISSLFQ RIPQKP K +R RPLPLP PHK
Sbjct: 83  PLVIDDDDEQVQESVNDDDDAVVWEPEEIEAISSLFQKRIPQKPDKPSRVRPLPLPQPHK 142

Query: 137 LRPPRLPNPKIRPTTVVSSRAL--LSKQVYKCPDFLIGLARAIRDL-SPEENVSKVLNRW 196
           LRP  LP PK     ++ S AL  +SKQVYK P FLIGLAR I+ L S + +VS VLN+W
Sbjct: 143 LRPLGLPTPK---KNIIRSPALSSVSKQVYKDPSFLIGLAREIKSLPSSDADVSLVLNKW 202

Query: 197 GPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLFPDDRVLASTVEVLSRNHELKV 256
             FL+KGSLS TI+ELGHMGLP+RAL+T+ WA++   L PD+R+LAST++VL+++HELK+
Sbjct: 203 VSFLRKGSLSTTIRELGHMGLPERALQTYHWAEKHSHLVPDNRILASTIQVLAKHHELKL 262

Query: 257 PVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILELGK 316
              L+    LAS+ V+EAM++G I+GG LNLA KL++ +K   R+LD SVYVK+ILE+ K
Sbjct: 263 ---LKFDNSLASKNVIEAMIKGCIEGGWLNLARKLILISKSNNRILDSSVYVKMILEIAK 322

Query: 317 NPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSWYVESGHEPSI 376
           NPDK  LV+ LLEEL +RE LKL+QQDCT+I+K+C +LG+FE+ E L+ W+  S  EPS+
Sbjct: 323 NPDKYHLVVALLEELKKREDLKLSQQDCTSIMKICVKLGEFELVESLFDWFKASNREPSV 382

Query: 377 VMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGDLSRAVRYFAK 436
           VMYT ++HSRYS++KYREA+S+VWEME +NC  DLPAY VVIKLFVAL DL RA+RY++K
Sbjct: 383 VMYTTMIHSRYSEQKYREAMSVVWEMEESNCLLDLPAYRVVIKLFVALDDLGRAMRYYSK 442

Query: 437 LKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDKQITSMLLQAKR 490
           LKEAGFSPTYD+YR MI++Y  SGRL KCKEI KE E+AG R+DK  +  LLQ ++
Sbjct: 443 LKEAGFSPTYDIYRDMISVYTASGRLTKCKEICKEVEDAGLRLDKDTSFRLLQLEK 479

[Close]

BLAST of Chy12G213420.1 vs. TAIR 10
Match: AT1G74850.1 (plastid transcriptionally active 2 )

HSP 1 Score: 82.4 bits (202), Expect = 1.1e-15
Identity = 72/323 (22.29%), Postives = 148/323 (45.82%), Query Frame = 0


Query: 173 LARAIRDLSPEENVSKVLNRWGPFLQKGSLSLTIKELGHMGLPDRALKTFCWAQEQHRLF 232
           L   +  L P  ++++ L+ +   L     +L  KE    G   R+L+ F + Q Q    
Sbjct: 79  LINKLSSLPPRGSIARCLDIFKNKLSLNDFALVFKEFAGRGDWQRSLRLFKYMQRQIWCK 138

Query: 233 PDDRVLASTVEVLSRNHELKVPVNLEEFTKLASRGV------LEAMMRGFIKGGSLNLAW 292
           P++ +    + +L R  E  +   LE F ++ S+GV        A++  + + G    + 
Sbjct: 139 PNEHIYTIMISLLGR--EGLLDKCLEVFDEMPSQGVSRSVFSYTALINAYGRNGRYETSL 198

Query: 293 KLLVAAKKGKRMLDPSV--YVKLILELGKNP-DKNGLVLTLLEELGQREALKLNQQDCTT 352
           +LL   K  K  + PS+  Y  +I    +   D  GL L L  E+ + E ++ +     T
Sbjct: 199 ELLDRMKNEK--ISPSILTYNTVINACARGGLDWEGL-LGLFAEM-RHEGIQPDIVTYNT 258

Query: 353 IVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESAN 412
           ++  C   G  + AE ++    + G  P +  Y+ LV +    R+  +   L+ EM S  
Sbjct: 259 LLSACAIRGLGDEAEMVFRTMNDGGIVPDLTTYSHLVETFGKLRRLEKVCDLLGEMASGG 318

Query: 413 CPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCK 472
              D+ +Y+V+++ +   G +  A+  F +++ AG +P  + Y  ++ ++  SGR    +
Sbjct: 319 SLPDITSYNVLLEAYAKSGSIKEAMGVFHQMQAAGCTPNANTYSVLLNLFGQSGRYDDVR 378

Query: 473 EIYKEAENAGFRMDKQITSMLLQ 487
           +++ E +++    D    ++L++
Sbjct: 379 QLFLEMKSSNTDPDAATYNILIE 395

[Close]

BLAST of Chy12G213420.1 vs. TAIR 10
Match: AT2G18940.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 76.6 bits (187), Expect = 6.0e-14
Identity = 71/290 (24.48%), Postives = 126/290 (43.45%), Query Frame = 0


Query: 197 LQKGSLSLTIKELGHMGLPDRALKTFCW---AQEQHRLFPDDRVLASTVEVLSRNHELKV 256
           L +  L   +K L   G  +RA+  F W   +     L  D +V+   V +L R  +  V
Sbjct: 134 LLRTDLVSLVKGLDDSGHWERAVFLFEWLVLSSNSGALKLDHQVIEIFVRILGRESQYSV 193

Query: 257 ------PVNLEEFTKLASRGVLEAMMRGFIKGGSLNLAWKLLVAAKKGKRMLDPS---VY 316
                  + L+E+  L        ++  + + G    A  L    K+    + PS   V 
Sbjct: 194 AAKLLDKIPLQEY--LLDVRAYTTILHAYSRTGKYEKAIDLFERMKE----MGPSPTLVT 253

Query: 317 VKLILEL-GKNPDKNGLVLTLLEELGQREALKLNQQDCTTIVKVCTRLGKFEIAEKLYSW 376
             +IL++ GK       +L +L+E+ + + LK ++  C+T++  C R G    A++ ++ 
Sbjct: 254 YNVILDVFGKMGRSWRKILGVLDEM-RSKGLKFDEFTCSTVLSACAREGLLREAKEFFAE 313

Query: 377 YVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGD 436
               G+EP  V Y AL+        Y EALS++ EME  +CP D   Y+ ++  +V  G 
Sbjct: 314 LKSCGYEPGTVTYNALLQVFGKAGVYTEALSVLKEMEENSCPADSVTYNELVAAYVRAGF 373

Query: 437 LSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAG 474
              A      + + G  P    Y  +I  Y  +G+  +  +++   + AG
Sbjct: 374 SKEAAGVIEMMTKKGVMPNAITYTTVIDAYGKAGKEDEALKLFYSMKEAG 416

[Close]

BLAST of Chy12G213420.1 vs. TAIR 10
Match: AT5G13770.1 (Pentatricopeptide repeat (PPR-like) superfamily protein )

HSP 1 Score: 70.5 bits (171), Expect = 4.3e-12
Identity = 62/237 (26.16%), Postives = 108/237 (45.57%), Query Frame = 0


Query: 257 LEEFTKLASRGVLEA------MMRGFIKGGSLNLAWKLLVAAKKGKRMLDPSVYVKLILE 316
           LE   ++  +G+ E+      ++R F +   + +  KL   A   K + DP + +K++L 
Sbjct: 268 LEVLEEMKDKGIPESSELYSMLIRAFAEAREVVITEKLFKEAGGKKLLKDPEMCLKVVLM 327

Query: 317 LGKNPDKNGLVLTLLEELGQREALKLNQQDC--TTIVKVCTRLGKFEIAEKLYSWYVESG 376
                 + G + T LE +      +L   DC    IV   ++   F  A K+Y W ++  
Sbjct: 328 Y----VREGNMETTLEVVAAMRKAELKVTDCILCAIVNGFSKQRGFAEAVKVYEWAMKEE 387

Query: 377 HEPSIVMYTALVHSRYSDRKYREALSLVWEMESANCPFDLPAYSVVIKLFVALGDLSRAV 436
            E   V Y   +++     KY +A  L  EM        + AYS ++ ++     LS AV
Sbjct: 388 CEAGQVTYAIAINAYCRLEKYNKAEMLFDEMVKKGFDKCVVAYSNIMDMYGKTRRLSDAV 447

Query: 437 RYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAKCKEIYKEAENAGFRMDK-QITSML 485
           R  AK+K+ G  P   +Y  +I ++  +  L + ++I+KE + A    DK   TSM+
Sbjct: 448 RLMAKMKQRGCKPNIWIYNSLIDMHGRAMDLRRAEKIWKEMKRAKVLPDKVSYTSMI 500

[Close]

BLAST of Chy12G213420.1 vs. TAIR 10
Match: AT5G25630.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 69.3 bits (168), Expect = 9.6e-12
Identity = 35/124 (28.23%), Postives = 64/124 (51.61%), Query Frame = 0


Query: 342 TTIVKVCTRLGKFEIAEKLYSWYVESGHEPSIVMYTALVHSRYSDRKYREALSLVWEMES 401
           T ++ V    G+   A+ ++    E+GH PS++ YT L+ +    ++Y    S+V E+E 
Sbjct: 49  TKLMNVLIERGRPHEAQTVFKTLAETGHRPSLISYTTLLAAMTVQKQYGSISSIVSEVEQ 108

Query: 402 ANCPFDLPAYSVVIKLFVALGDLSRAVRYFAKLKEAGFSPTYDVYRKMITIYLVSGRLAK 461
           +    D   ++ VI  F   G++  AV+   K+KE G +PT   Y  +I  Y ++G+  +
Sbjct: 109 SGTKLDSIFFNAVINAFSESGNMEDAVQALLKMKELGLNPTTSTYNTLIKGYGIAGKPER 168

Query: 462 CKEI 466
             E+
Sbjct: 169 SSEL 172

The following BLAST results are available for this feature:

BLAST of Chy12G213420.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5XET4	1.6e-141	56.30	Pentatricopeptide repeat-containing protein At2g01860 OS=Arabidopsis thaliana OX...	[more]
Q9S7Q2	1.5e-14	22.29	Pentatricopeptide repeat-containing protein At1g74850, chloroplastic OS=Arabidop...	[more]
O64624	8.5e-13	24.48	Pentatricopeptide repeat-containing protein At2g18940, chloroplastic OS=Arabidop...	[more]
Q66GP4	6.1e-11	26.16	Pentatricopeptide repeat-containing protein At5g13770, chloroplastic OS=Arabidop...	[more]
Q8GZ63	1.4e-10	28.23	Pentatricopeptide repeat-containing protein At5g25630 OS=Arabidopsis thaliana OX...	[more]

BLAST of Chy12G213420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVM0	1.4e-268	96.52	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G144300 PE=4 SV=1	[more]
A0A1S3CGD0	4.6e-264	95.50	pentatricopeptide repeat-containing protein At2g01860 OS=Cucumis melo OX=3656 GN...	[more]
A0A5D3BQZ3	1.8e-247	95.62	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A6J1GIP2	7.2e-225	81.04	pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita mo...	[more]
A0A6J1KK31	8.0e-224	80.44	pentatricopeptide repeat-containing protein At2g01860 isoform X1 OS=Cucurbita ma...	[more]

BLAST of Chy12G213420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004139567.1	0.0	96.52	pentatricopeptide repeat-containing protein At2g01860 [Cucumis sativus] >XP_0116...	[more]
XP_008462173.1	0.0	95.50	PREDICTED: pentatricopeptide repeat-containing protein At2g01860 [Cucumis melo] ...	[more]
XP_038893977.1	0.0	90.71	pentatricopeptide repeat-containing protein At2g01860 [Benincasa hispida] >XP_03...	[more]
KAA0052071.1	6.95e-312	95.62	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK00686...	[more]
KAG7020726.1	1.41e-283	81.04	Pentatricopeptide repeat-containing protein, partial [Cucurbita argyrosperma sub...	[more]

BLAST of Chy12G213420.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G01860.1	1.2e-142	56.30	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G74850.1	1.1e-15	22.29	plastid transcriptionally active 2	[more]
AT2G18940.1	6.0e-14	24.48	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT5G13770.1	4.3e-12	26.16	Pentatricopeptide repeat (PPR-like) superfamily protein	[more]
AT5G25630.1	9.6e-12	28.23	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 170..295 e-value: 5.8E-6 score: 27.9
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 319..489 e-value: 9.6E-26 score: 92.9
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 410..442 e-value: 0.001 score: 17.1
IPR002885	Pentatricopeptide repeat	PFAM	PF13812	PPR_3	coord: 395..453 e-value: 1.7E-4 score: 21.6 coord: 330..380 e-value: 0.012 score: 15.7
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 337..371 score: 8.812943
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 407..441 score: 9.985802
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 116..146
None	No IPR available	PANTHER	PTHR46128	MITOCHONDRIAL GROUP I INTRON SPLICING FACTOR CCM1	coord: 77..464
None	No IPR available	PANTHER	PTHR46128:SF179	TETRATRICOPEPTIDE REPEAT-LIKE SUPERFAMILY PROTEIN	coord: 77..464

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G213420	Chy12G213420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213420.1.exon1	Chy12G213420.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G213420.1.cds1	Chy12G213420.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G213420.1	Chy12G213420.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding