Chy12G212570.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G212570.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Protein CLAVATA 3
Location	chrH12: 9433304 .. 9434308 (-)
Sequence length	330
RNA-Seq Expression	Chy12G212570.1
Synteny	Chy12G212570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGGTTCTTTTCATTCTCCTTTTCATATTTTCATCTTTTTAGTACTTTACCTCATTATATTATATTCATATTCATCTACCCTTTTTTCTCAATATAGATTATAACTATTGCTGCTGGAGAGTTGGGCAATGTCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGGTAAGATCTCAGGCTAGAGAAGGATGTTGAAATTTTCATATTGGGTATGGAATTAAGTTTATAGCTTCTTCTTATTGTAAAAATAAACTACGCTCTTTCGAGGAATTATTGTCAATCTTATTTTGTCGATCCTAAAATTGGAAATCTGTGAATGTGAATATTTTCAAGTGAGTATATGTTTCTTTTCTCACTGTTCTTTATACTAAATTTCTTAGGGAATGCTTGTTCTTTATGAGAACTTGTCTTTTGTATTTTTGTATTATCAATACTTTTTATCTTCACACTATTTTTTTCAATTTAAAATTATTATTTAATGTGTGGATCTCACGATATTCTTGTAAGATATTAATCTGACAAAGTACTAAATGAAATAGTAACATGCAAAATATATATATGAAAAAAAACCACATTTATCCATCCTCTCACTCCACTCAAAAAATAAAATAAAATAGAAATATTTTAAAGAAATAGTAAGAAAAATTTGTGTGACAAATTATTTATTAGTCCAGGAAACGAGTGGTGTGGATAGTGTCAGAAGATAGATTGTTTATTGTTTTTGAACGTTAGTTTCTTACTTACAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGGGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCTTCGGGACCTGACCCATTGCACCATAATGGGGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

mRNA sequence

CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCAATGTCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGGGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCTTCGGGACCTGACCCATTGCACCATAATGGGGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Coding sequence (CDS)

CACAAAATGGCATCACCTTCTCCCTCTTCTTTCCTTTCCCTTCTACTTCTCTTTTTCTTCCTCGCTCATATCCTCTTTTCTTCTGATTATAACTATTGCTGCTGGAGAGTTGGGCAATGTCGTTATGTTTCCGGTAAGCTGTCGGTCTCTCGAGCTCTTCACATGAGCCGGAAGATGCTTGTAGAGATGAAGAAGGAGATGGAAGAGGGAGAAAAGGGCGGGAAGAGGTGGGGGACGGGGGCGGAGTGGGAGCAGTTGCGGAGGGTGCCTTCGGGACCTGACCCATTGCACCATAATGGGGGAAGCCCAAAGAAGCCTAGAACTCCTTGA

Protein sequence

HKMASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGQCRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP*

Homology

[Close]

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL
Match: A0A5A7UGG1 (Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001690 PE=4 SV=1)

HSP 1 Score: 109.4 bits (272), Expect = 9.8e-21
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 55  MSRKMLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110
           MSRKM+VEMKKEMEEG+KGGKRW T AEWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 1   MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL
Match: A0A7J8WB42 (Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_029119 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 3.1e-06
Identity = 43/110 (39.09%), Postives = 54/110 (49.09%), Query Frame = 0


Query: 3   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGQCRYVSGKLSVSRALH----MSRK 62
           +  PS S F S + L +    + F    +   W  G   +++G +S     H     +RK
Sbjct: 28  VCGPSLSLFSSFVTLAYLGFRLDFRMSISLSFWCFGFWNFLTGCVSGHGCFHEKPAQNRK 87

Query: 63  MLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRT 109
           +L    KE      G        EWE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 88  ILHADLKENNGSITGAGNMENFVEWE-LRAVPSGPDPLHHNGGSPKKPRT 136

[Close]

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL
Match: A0A3N7EIT4 (Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G217500 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 4.0e-06
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 3   MASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGQCRYVSGKLSVSRALHMSRKMLVE 62
           MA PS    L L+L+ F++       + +Y C    +C Y     +VS     SRK+LV 
Sbjct: 1   MACPSKFYSLMLVLVLFYMV-----MEESYGCSTGQRCFYAE---AVSPVDVKSRKVLVV 60

Query: 63  MKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110
           +   +  G  G    G   E  +LR  PSGPDPLHHNGGSP+KPRTP
Sbjct: 61  LTGGL-RGPTGSTGNGEKLEIRELRAAPSGPDPLHHNGGSPEKPRTP 98

[Close]

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL
Match: A0A660KSX1 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009942 PE=4 SV=1)

HSP 1 Score: 60.5 bits (145), Expect = 5.2e-06
Identity = 33/70 (47.14%), Postives = 40/70 (57.14%), Query Frame = 0


Query: 40  CRYVSGKLSVSRALHMSRKMLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHN 99
           C Y     S+          L EMK+ ++  +KG      G  +  LR+VPSGPDPLHHN
Sbjct: 103 CFYSKAAASLKTENRKLMAGLKEMKEAVKGVQKGSTTSRNGRSFVGLRQVPSGPDPLHHN 162

Query: 100 GGSPKKPRTP 110
           GGSPKKPRTP
Sbjct: 163 GGSPKKPRTP 172

[Close]

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL
Match: A0A7J9J6C1 (Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014495 PE=4 SV=1)

HSP 1 Score: 60.1 bits (144), Expect = 6.8e-06
Identity = 44/107 (41.12%), Postives = 57/107 (53.27%), Query Frame = 0


Query: 12  LSLLLLFFFLAHILFSSDY------NYCCWRVGQCRYVSGKLSVSRALH----MSRKMLV 71
           LSL   FF LA++ F  D+      ++ C+R+    +++G +S     H     +RK+L 
Sbjct: 33  LSLFFSFFTLAYLSFRLDFRMSISLSFWCFRL--WNFLTGCVSGHGCFHEKPAQNRKILH 92

Query: 72  EMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRT 109
              KE      G         WE LR VPSGPDPLHHNGGSPKKPRT
Sbjct: 93  ADLKENNGSITGAGNMENFVGWE-LRAVPSGPDPLHHNGGSPKKPRT 136

[Close]

BLAST of Chy12G212570.1 vs. NCBI nr
Match: KAE8652825.1 (hypothetical protein Csa_022700, partial [Cucumis sativus])

HSP 1 Score: 219 bits (557), Expect = 9.69e-72
Identity = 107/109 (98.17%), Postives = 108/109 (99.08%), Query Frame = 0


Query: 1   HKMASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGQCRYVSGKLSVSRALHMSRKML 60
           HKMASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVG+CRYVSGKLSVSRALHMSRKML
Sbjct: 1   HKMASPSPSSFLSLLLLFFFLAHILFSSDYNYCCWRVGRCRYVSGKLSVSRALHMSRKML 60

Query: 61  VEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
           VEMKKEMEEGEKGGKRWGT AEWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 61  VEMKKEMEEGEKGGKRWGTVAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109

[Close]

BLAST of Chy12G212570.1 vs. NCBI nr
Match: XP_038877536.1 (protein CLAVATA 3 [Benincasa hispida])

HSP 1 Score: 140 bits (352), Expect = 1.80e-40
Identity = 82/115 (71.30%), Postives = 85/115 (73.91%), Query Frame = 0


Query: 3   MASPSPSSFLS------LLLLFFFLAHILFSSDYNYCCWRVGQCRY--VSGKLSVSRALH 62
           MA PS S F+S      LLLL FFL    FSSDY YCCWRV +CR   VSGK  VSRAL 
Sbjct: 1   MALPSSSKFISSFAFFSLLLLIFFL----FSSDY-YCCWRVARCRCRCVSGKPPVSRALQ 60

Query: 63  MSRKMLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
           +SRKML EMKKEMEEG  G KRW    EWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 61  ISRKMLQEMKKEMEEGVDGDKRWWPAGEWEQLRRVPSGPDPLHHNGGSPKKPRTP 110

[Close]

BLAST of Chy12G212570.1 vs. NCBI nr
Match: KAA0054350.1 (protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucumis melo var. makuwa])

HSP 1 Score: 107 bits (268), Expect = 2.34e-28
Identity = 51/55 (92.73%), Postives = 53/55 (96.36%), Query Frame = 0


Query: 55  MSRKMLVEMKKEMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
           MSRKM+VEMKKEMEEG+KGGKRW T AEWEQLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 1   MSRKMIVEMKKEMEEGDKGGKRWRTMAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 55

[Close]

BLAST of Chy12G212570.1 vs. NCBI nr
Match: KAG6583691.1 (hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 82.8 bits (203), Expect = 5.34e-18
Identity = 56/104 (53.85%), Postives = 68/104 (65.38%), Query Frame = 0


Query: 7   SPSSFL-SLLLLFFFLAHILFSSDYNYCCWRVGQCRYVSGKLSVSRALHMSRKMLVEMKK 66
           +PS+ + SLLLL FFL+H   S+        + + R V     + RAL  +RKML EM K
Sbjct: 2   APSNLIFSLLLLIFFLSHNFSSAS------TLTRRRSVPDTPPLLRALQ-TRKMLREMVK 61

Query: 67  EMEEGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
           E+E    GG+R     EW+QLRRVPSGPDPLHHNGGSPKKPRTP
Sbjct: 62  ELEVD--GGERRRPSVEWDQLRRVPSGPDPLHHNGGSPKKPRTP 96

[Close]

BLAST of Chy12G212570.1 vs. NCBI nr
Match: KAG6678774.1 (hypothetical protein I3842_14G097200 [Carya illinoinensis])

HSP 1 Score: 59.3 bits (142), Expect = 9.10e-09
Identity = 40/90 (44.44%), Postives = 50/90 (55.56%), Query Frame = 0


Query: 28  SDYNYCCWRVGQCRYVSGKLSVSRALHMSRKMLVEMKKEME--------EGEKGGKRWGT 87
           S + YC  R G C Y    +S  R    +RK+L  +K++ E        +    G   G+
Sbjct: 14  SPHCYCNGRYG-CFYAKAVVSSERE---NRKLLAGLKQKKETVKVKGGLQASATGSNGGS 73

Query: 88  GAEWEQLRRVPSGPDPLHHNGGSPKKPRTP 109
              WE LRRVPSGPDPLHHNGG+P KPRTP
Sbjct: 74  FQGWE-LRRVPSGPDPLHHNGGNPTKPRTP 98

[Close]

BLAST of Chy12G212570.1 vs. TAIR 10
Match: AT2G27250.2 (CLAVATA3 )

HSP 1 Score: 41.2 bits (95), Expect = 6.3e-04
Identity = 27/59 (45.76%), Postives = 35/59 (59.32%), Query Frame = 0


Query: 55  MSRKMLVEMKKEME------EGEKGGKRWGTGAEWEQLRRVPSGPDPLHHNGGSPKKPR 108
           +S + ++ MK E E      E EK  K  G G   E+LR VPSGPDPLHH+   P++PR
Sbjct: 30  LSNRKMMMMKMESEWVGANGEAEK-AKTKGLGLH-EELRTVPSGPDPLHHHVNPPRQPR 86

The following BLAST results are available for this feature:

BLAST of Chy12G212570.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G212570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UGG1	9.8e-21	92.73	Protein CLAVATA 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00...	[more]
A0A7J8WB42	3.1e-06	39.09	Uncharacterized protein OS=Gossypium klotzschianum OX=34286 GN=Goklo_029119 PE=4...	[more]
A0A3N7EIT4	4.0e-06	41.12	Uncharacterized protein OS=Populus trichocarpa OX=3694 GN=POPTR_001G217500 PE=4 ...	[more]
A0A660KSX1	5.2e-06	47.14	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_009942 PE=4 SV=1	[more]
A0A7J9J6C1	6.8e-06	41.12	Uncharacterized protein OS=Gossypium armourianum OX=34283 GN=Goarm_014495 PE=4 S...	[more]

BLAST of Chy12G212570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8652825.1	9.69e-72	98.17	hypothetical protein Csa_022700, partial [Cucumis sativus]	[more]
XP_038877536.1	1.80e-40	71.30	protein CLAVATA 3 [Benincasa hispida]	[more]
KAA0054350.1	2.34e-28	92.73	protein CLAVATA 3 [Cucumis melo var. makuwa] >TYK12387.1 protein CLAVATA 3 [Cucu...	[more]
KAG6583691.1	5.34e-18	53.85	hypothetical protein SDJN03_19623, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6678774.1	9.10e-09	44.44	hypothetical protein I3842_14G097200 [Carya illinoinensis]	[more]

BLAST of Chy12G212570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G27250.2	6.3e-04	45.76	CLAVATA3	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 87..109
IPR039818	CLAVATA3	PANTHER	PTHR36349:SF2	PROTEIN CLAVATA 3	coord: 3..109
IPR044962	CLV3/ESR signal peptide family	PANTHER	PTHR36349	PROTEIN CLAVATA 3	coord: 3..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G212570	Chy12G212570	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G212570.1.exon3	Chy12G212570.1.exon3	exon
Chy12G212570.1.exon2	Chy12G212570.1.exon2	exon
Chy12G212570.1.exon1	Chy12G212570.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G212570.1.cds3	Chy12G212570.1.cds3	CDS
Chy12G212570.1.cds2	Chy12G212570.1.cds2	CDS
Chy12G212570.1.cds1	Chy12G212570.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G212570.1	Chy12G212570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0045168	cell-cell signaling involved in cell fate commitment
cellular_component	GO:0016020	membrane
molecular_function	GO:0033612	receptor serine/threonine kinase binding