Chy12G211460.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G211460.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	RPM1-interacting protein 4-like
Location	chrH12: 7641089 .. 7641932 (+)
Sequence length	687
RNA-Seq Expression	Chy12G211460.1
Synteny	Chy12G211460.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCAGTGAGTGTTTTCTTCTTCTTCTTTGTTGCTCTTTTTTTTTTCCATCAACACAAAAACAAAAATAAAATTCAACTATTAAATGATATGGTGGTCGTGTGGAATTATTAATCAGAAGTAAGTTTGTATTAGTCTTCAATTAATTTAATGTAATGGGCAGGGGGCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGACCTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTAAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGATATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGCTCTAATGATGCTCAGAGCGTTCCGCCATTGATGAATCAAAGCAAGCAAGCAATTACTCAAACAACAGTTGCTAAAACTTCAACTCATGGATCCACTTCATTCGGTTCCAAGGTACCCTCCTCTTTTTTCTTTTTCAAGTTTCTATTAATTTAG

mRNA sequence

ATGGCAGGGGCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGACCTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTAAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGATATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGCTCTAATGATGCTCAGAGCGTTCCGCCATTGATGAATCAAAGCAAGCAAGCAATTACTCAAACAACAGTTGCTAAAACTTCAACTCATGGATCCACTTCATTCGGTTCCAAGGTACCCTCCTCTTTTTTCTTTTTCAAGTTTCTATTAATTTAG

Coding sequence (CDS)

ATGGCAGGGGCAAAGTCGTCATCTCACGTTCCCAAATTCGGTAATTGGGATTCCGATGACGTACCGTACACCATCTATTTCGAAAACGCCCGTGACCTCCAAGCCGCCGGCATCACCTTCGATCCCAACGATCCCGACACCTACCCGCCGACCGCCGTCGCAAACCAAAATTCAAGCCCAGCCAACCACCACCGTTATCACGATGGCGACGACTCCCACCAGCGGCGAGAGATTGTAAACTCCGGGTCGGAGAAATTAAGCAGTGAGAGAAGCGATTCGGATTACGCGCTTCTGAAAGCGAAACAGAGTGGGAGGAAGAAGAAAAATAGCAATGGAGCGGAAGGAATGAGTAGATTTTCTCCGGCGACGGTGGACGGAAAGGGTAATCGGAACCCTAGGGTGCGGCGGAATAATGAGGGGGATATGATGGCGTCGGTGCCGAAATTTGGGAGCTGGGATGTGAGGGATCCGAAATCGGGAGATGGATATACGGCGATATTCAATAAAGTGAAGATAGAGAAGCAAGTTGGAGGCTCTAATGATGCTCAGAGCGTTCCGCCATTGATGAATCAAAGCAAGCAAGCAATTACTCAAACAACAGTTGCTAAAACTTCAACTCATGGATCCACTTCATTCGGTTCCAAGGTACCCTCCTCTTTTTTCTTTTTCAAGTTTCTATTAATTTAG

Protein sequence

MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSPANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFSPATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSNDAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKVPSSFFFFKFLLI*

Homology

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BLAST of Chy12G211460.1 vs. ExPASy Swiss-Prot
Match: Q8GYN5 (RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 2.7e-17
Identity = 64/193 (33.16%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 8   SHVPKFGNWDSDD-VPYTIYFENARDLQAAGI-TFDPNDPDTYPPTAVANQNSSPANHHR 67
           S+VPKFGNW++++ VPYT YF+ AR  +A G    +PNDP+    +        P++  +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  YHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKA--KQSGRKKKNSNGAEGMSRFSPAT 127
               D   + RE + S  E    +  D+  +  +A  K+ GR  +N N  +  S     +
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQN-NSYDNKSPLHKNS 123

Query: 128 VDGKGNRNPR---VRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 187
            DG G   P+   +R +   + +  VPKFG WD  +P S DGYT IFNKV+ E+  G + 
Sbjct: 124 YDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 183

Query: 188 DAQSVPPLMNQSK 194
              S  P    S+
Sbjct: 184 SGSSRTPTHQSSR 195

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BLAST of Chy12G211460.1 vs. ExPASy Swiss-Prot
Match: O22633 (Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.4e-05
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 40

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BLAST of Chy12G211460.1 vs. ExPASy Swiss-Prot
Match: Q8S3M3 (NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1)

HSP 1 Score: 48.1 bits (113), Expect = 1.5e-04
Identity = 52/222 (23.42%), Postives = 84/222 (37.84%), Query Frame = 0


Query: 8   SHVPKFGNWDSDDVPYTIYFENA-RDLQAAGITFDPNDPDT-----YPPTAVANQNSSPA 67
           +HVPKFGNWD +++ YT YFE   RD       F+PNDP+      YP T   +   S  
Sbjct: 5   AHVPKFGNWDGENISYTTYFETVHRDKGDGSKIFNPNDPEENPQAFYPRTVAQDHQHSEK 64

Query: 68  NH-------------------------HRYHDGD------------DSHQRREIVNSGSE 127
           +H                         HRY +              DSH+ R    S + 
Sbjct: 65  HHNDTSTDYHVVKQHRRKHHRREDREFHRYVEAPRPHRSPFQGVDMDSHRSRNHGTSATM 124

Query: 128 KLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFSPATVDGKGNRNPRVRRNNEGDMMA 184
             S +R+  ++     +    ++ N + AEG S     T      ++ ++ R       +
Sbjct: 125 SSSVKRNSDNWL---PQHQHHRRTNKDLAEGKSWLFTTTTASSYTKSRKLSRECSSTTQS 184

[Close]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL
Match: A0A0A0M0M0 (AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G699040 PE=4 SV=1)

HSP 1 Score: 412.5 bits (1059), Expect = 1.1e-111
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTIYFENAR+LQAAGITFDPNDPDTYPPTAVANQNSSP
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PATVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 217
           D QSVP LMNQ+KQ ITQTTV K+S+HGSTSFGSK+
Sbjct: 181 DTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL
Match: A0A5A7UH42 (RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G001090 PE=4 SV=1)

HSP 1 Score: 393.7 bits (1010), Expect = 5.4e-106
Identity = 195/219 (89.04%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENAR+LQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKVPSS 220
           + Q+VPPLMNQ+KQ +TQTTVAKTST GSTSF SKV  S
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKVQIS 219

[Close]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL
Match: A0A1S3C9P5 (RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=1)

HSP 1 Score: 392.5 bits (1007), Expect = 1.2e-105
Identity = 193/216 (89.35%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENAR+LQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 217
           + Q+VPPLMNQ+KQ +TQTTVAKTST GSTSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL
Match: A0A6J1CND0 (RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 PE=4 SV=1)

HSP 1 Score: 255.8 bits (652), Expect = 1.8e-64
Identity = 142/222 (63.96%), Postives = 167/222 (75.23%), Query Frame = 0


Query: 4   AKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTA--VANQNSSPA 63
           AKSSSHVPKFGNWD+DDVPYTI FENA +L+AAG+TFDPNDPDTYPP A   AN  S+P+
Sbjct: 3   AKSSSHVPKFGNWDTDDVPYTICFENAGELRAAGVTFDPNDPDTYPPEAFPAANHRSNPS 62

Query: 64  NHHRYHDGDDSHQR------REIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEG 123
           +  R+H   D H+R      R+  +SGSEKLSSERS SDY+LLK +  GR+KK +NG +G
Sbjct: 63  DRRRHH---DHHRRPREQPNRDRRSSGSEKLSSERSGSDYSLLK-EPGGRRKKINNGVDG 122

Query: 124 MSRFSPATVDGKGNRNPRVR-RNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEK 183
           +SRF P      GN NP  R R NEG+M+ASVPKFGSWD RDPKSGDGYTAIFNKVK+EK
Sbjct: 123 ISRFPPTAAGHGGNPNPNPRARRNEGEMVASVPKFGSWDARDPKSGDGYTAIFNKVKMEK 182

Query: 184 QVGGSNDAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 217
           ++GGSN +Q+VPPL NQ+KQ      V     HGSTSF SKV
Sbjct: 183 KIGGSNSSQAVPPLTNQTKQQPIPQIV-----HGSTSFVSKV 215

[Close]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL
Match: A0A6J1GSU2 (RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE=4 SV=1)

HSP 1 Score: 228.0 bits (580), Expect = 3.9e-56
Identity = 130/216 (60.19%), Postives = 144/216 (66.67%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAGAKSS HVPKFGNWD+DDVPYTI FENAR+L+AAGITFDPNDPDTYPP          
Sbjct: 1   MAGAKSSFHVPKFGNWDTDDVPYTICFENARELRAAGITFDPNDPDTYPPEVFKPVAHDG 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
             H R      + +R  I+NSGSEKLSSERS SDYALL       KK   NG EG+SR +
Sbjct: 61  GEHQRRPRQQPNRERGAIINSGSEKLSSERSGSDYALL-------KKSKENGVEGISRLA 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PA     GN              ASVPKFGSWD RDPKSGDGYTAIFNK+KIEKQ+  SN
Sbjct: 121 PAVAGHGGN-------------PASVPKFGSWDARDPKSGDGYTAIFNKMKIEKQIAASN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 217
             QSVPPLMN++KQ I  T     +T G TSF SK+
Sbjct: 181 -PQSVPPLMNKTKQPIAHT----NTTSGFTSFASKI 191

[Close]

BLAST of Chy12G211460.1 vs. NCBI nr
Match: XP_011660296.1 (RPM1-interacting protein 4 [Cucumis sativus] >KGN66824.1 hypothetical protein Csa_007241 [Cucumis sativus])

HSP 1 Score: 413 bits (1061), Expect = 8.91e-145
Identity = 205/216 (94.91%), Postives = 211/216 (97.69%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTIYFENAR+LQAAGITFDPNDPDTYPPTAVANQNSSP
Sbjct: 1   MAGPKSSSHVPKFGNWDSDDVPYTIYFENARELQAAGITFDPNDPDTYPPTAVANQNSSP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           PATVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN
Sbjct: 121 PATVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 216
           D QSVP LMNQ+KQ ITQTTV K+S+HGSTSFGSK+
Sbjct: 181 DTQSVPALMNQTKQPITQTTVGKSSSHGSTSFGSKI 216

[Close]

BLAST of Chy12G211460.1 vs. NCBI nr
Match: KAA0054298.1 (RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK12335.1 RPM1-interacting protein 4-like [Cucumis melo var. makuwa])

HSP 1 Score: 394 bits (1012), Expect = 4.31e-137
Identity = 195/219 (89.04%), Postives = 207/219 (94.52%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENAR+LQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKVPSS 219
           + Q+VPPLMNQ+KQ +TQTTVAKTST GSTSF SKV  S
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKVQIS 219

[Close]

BLAST of Chy12G211460.1 vs. NCBI nr
Match: XP_008458983.1 (PREDICTED: RPM1-interacting protein 4-like [Cucumis melo])

HSP 1 Score: 393 bits (1009), Expect = 7.50e-137
Identity = 193/216 (89.35%), Postives = 206/216 (95.37%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAG KSSSHVPKFGNWDSDDVPYTI+FENAR+LQAAG+TFDPNDPDTYPP   ANQNS P
Sbjct: 1   MAGTKSSSHVPKFGNWDSDDVPYTIFFENARELQAAGVTFDPNDPDTYPPAVFANQNSIP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120
           A+HHR+HDG+DSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS
Sbjct: 61  ADHHRHHDGEDSHQRREIVNSGSEKLSSERSDSDYALLKAKQSGRKKKNSNGAEGMSRFS 120

Query: 121 PATVDGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 180
           P TVDGKGNRNPRVRRNNEG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ+GGSN
Sbjct: 121 PTTVDGKGNRNPRVRRNNEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQIGGSN 180

Query: 181 DAQSVPPLMNQSKQAITQTTVAKTSTHGSTSFGSKV 216
           + Q+VPPLMNQ+KQ +TQTTVAKTST GSTSF SK+
Sbjct: 181 NPQTVPPLMNQTKQPMTQTTVAKTSTQGSTSFVSKI 216

[Close]

BLAST of Chy12G211460.1 vs. NCBI nr
Match: XP_038895247.1 (RPM1-interacting protein 4-like isoform X1 [Benincasa hispida])

HSP 1 Score: 327 bits (839), Expect = 1.18e-110
Identity = 177/228 (77.63%), Postives = 193/228 (84.65%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAGAKSSSHVPKFGNWDSDDVPYTI FENAR+L+AAG+ FDPNDPDTYPP AV NQNS+P
Sbjct: 1   MAGAKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVDFDPNDPDTYPPAAVINQNSTP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120
           A+H       D HQRRE+ NSGSEKLSSERS SDYALLK AKQSGRKKK+SNGAEGMSRF
Sbjct: 61  ADHRG-----DYHQRREMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKHSNGAEGMSRF 120

Query: 121 SPATV----DGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ 180
           +P T      GKGNRNPRVRRN+EG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ
Sbjct: 121 TPTTTVSGHGGKGNRNPRVRRNDEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ 180

Query: 181 VGGSNDAQSVPPLMNQSKQA-ITQTTVAKTSTHGSTSFGSKVPSSFFF 222
           +GGSN+ Q+VPPLMNQ+K+  I QTT   T THGS SF SKV  +F F
Sbjct: 181 IGGSNNPQAVPPLMNQTKKLPIAQTTTTAT-THGSNSFVSKVLITFCF 222

[Close]

BLAST of Chy12G211460.1 vs. NCBI nr
Match: XP_038895249.1 (RPM1-interacting protein 4-like isoform X2 [Benincasa hispida])

HSP 1 Score: 325 bits (834), Expect = 3.38e-110
Identity = 174/222 (78.38%), Postives = 190/222 (85.59%), Query Frame = 0


Query: 1   MAGAKSSSHVPKFGNWDSDDVPYTIYFENARDLQAAGITFDPNDPDTYPPTAVANQNSSP 60
           MAGAKSSSHVPKFGNWDSDDVPYTI FENAR+L+AAG+ FDPNDPDTYPP AV NQNS+P
Sbjct: 1   MAGAKSSSHVPKFGNWDSDDVPYTICFENARELRAAGVDFDPNDPDTYPPAAVINQNSTP 60

Query: 61  ANHHRYHDGDDSHQRREIVNSGSEKLSSERSDSDYALLK-AKQSGRKKKNSNGAEGMSRF 120
           A+H       D HQRRE+ NSGSEKLSSERS SDYALLK AKQSGRKKK+SNGAEGMSRF
Sbjct: 61  ADHRG-----DYHQRREMGNSGSEKLSSERSGSDYALLKEAKQSGRKKKHSNGAEGMSRF 120

Query: 121 SPATV----DGKGNRNPRVRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ 180
           +P T      GKGNRNPRVRRN+EG+MMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ
Sbjct: 121 TPTTTVSGHGGKGNRNPRVRRNDEGEMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQ 180

Query: 181 VGGSNDAQSVPPLMNQSKQA-ITQTTVAKTSTHGSTSFGSKV 216
           +GGSN+ Q+VPPLMNQ+K+  I QTT   T THGS SF SK+
Sbjct: 181 IGGSNNPQAVPPLMNQTKKLPIAQTTTTAT-THGSNSFVSKI 216

[Close]

BLAST of Chy12G211460.1 vs. TAIR 10
Match: AT3G25070.1 (RPM1 interacting protein 4 )

HSP 1 Score: 90.5 bits (223), Expect = 1.9e-18
Identity = 64/193 (33.16%), Postives = 97/193 (50.26%), Query Frame = 0


Query: 8   SHVPKFGNWDSDD-VPYTIYFENARDLQAAGI-TFDPNDPDTYPPTAVANQNSSPANHHR 67
           S+VPKFGNW++++ VPYT YF+ AR  +A G    +PNDP+    +        P++  +
Sbjct: 4   SNVPKFGNWEAEENVPYTAYFDKARKTRAPGSKIMNPNDPEYNSDSQSQAPPHPPSSRTK 63

Query: 68  YHDGDDSHQRREIVNSGSEKLSSERSDSDYALLKA--KQSGRKKKNSNGAEGMSRFSPAT 127
               D   + RE + S  E    +  D+  +  +A  K+ GR  +N N  +  S     +
Sbjct: 64  PEQVDTVRRSREHMRSREESELKQFGDAGGSSNEAANKRQGRASQN-NSYDNKSPLHKNS 123

Query: 128 VDGKGNRNPR---VRRNNEGDMMASVPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSN 187
            DG G   P+   +R +   + +  VPKFG WD  +P S DGYT IFNKV+ E+  G + 
Sbjct: 124 YDGTGKSRPKPTNLRADESPEKVTVVPKFGDWDENNPSSADGYTHIFNKVREERSSGANV 183

Query: 188 DAQSVPPLMNQSK 194
              S  P    S+
Sbjct: 184 SGSSRTPTHQSSR 195

[Close]

BLAST of Chy12G211460.1 vs. TAIR 10
Match: AT2G04410.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 53.5 bits (127), Expect = 2.6e-07
Identity = 21/37 (56.76%), Postives = 28/37 (75.68%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGGSNDA 183
           +PKFG WDV DP S +G+T IFNK + EK+ GG +D+
Sbjct: 8   LPKFGEWDVNDPSSAEGFTVIFNKARNEKKGGGKSDS 44

[Close]

BLAST of Chy12G211460.1 vs. TAIR 10
Match: AT5G55850.1 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 8   LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 40

[Close]

BLAST of Chy12G211460.1 vs. TAIR 10
Match: AT5G55850.2 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

[Close]

BLAST of Chy12G211460.1 vs. TAIR 10
Match: AT5G55850.3 (RPM1-interacting protein 4 (RIN4) family protein )

HSP 1 Score: 51.6 bits (122), Expect = 9.7e-07
Identity = 20/33 (60.61%), Postives = 25/33 (75.76%), Query Frame = 0


Query: 146 VPKFGSWDVRDPKSGDGYTAIFNKVKIEKQVGG 179
           +PKFG WDV DP S +G+T IFNK + EK+ GG
Sbjct: 24  LPKFGEWDVNDPASAEGFTVIFNKARDEKKTGG 56

The following BLAST results are available for this feature:

BLAST of Chy12G211460.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8GYN5	2.7e-17	33.16	RPM1-interacting protein 4 OS=Arabidopsis thaliana OX=3702 GN=RIN4 PE=1 SV=1	[more]
O22633	1.4e-05	60.61	Protein NOI4 OS=Arabidopsis thaliana OX=3702 GN=NOI4 PE=1 SV=1	[more]
Q8S3M3	1.5e-04	23.42	NOI-like protein OS=Elaeis oleifera OX=80265 PE=2 SV=1	[more]

BLAST of Chy12G211460.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0M0M0	1.1e-111	94.91	AvrRpt-cleavage domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G69...	[more]
A0A5A7UH42	5.4e-106	89.04	RPM1-interacting protein 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S3C9P5	1.2e-105	89.35	RPM1-interacting protein 4-like OS=Cucumis melo OX=3656 GN=LOC103498234 PE=4 SV=...	[more]
A0A6J1CND0	1.8e-64	63.96	RPM1-interacting protein 4-like OS=Momordica charantia OX=3673 GN=LOC111012692 P...	[more]
A0A6J1GSU2	3.9e-56	60.19	RPM1-interacting protein 4-like OS=Cucurbita moschata OX=3662 GN=LOC111457178 PE...	[more]

BLAST of Chy12G211460.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_011660296.1	8.91e-145	94.91	RPM1-interacting protein 4 [Cucumis sativus] >KGN66824.1 hypothetical protein Cs...	[more]
KAA0054298.1	4.31e-137	89.04	RPM1-interacting protein 4-like [Cucumis melo var. makuwa] >TYK12335.1 RPM1-inte...	[more]
XP_008458983.1	7.50e-137	89.35	PREDICTED: RPM1-interacting protein 4-like [Cucumis melo]	[more]
XP_038895247.1	1.18e-110	77.63	RPM1-interacting protein 4-like isoform X1 [Benincasa hispida]	[more]
XP_038895249.1	3.38e-110	78.38	RPM1-interacting protein 4-like isoform X2 [Benincasa hispida]	[more]

BLAST of Chy12G211460.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G25070.1	1.9e-18	33.16	RPM1 interacting protein 4	[more]
AT2G04410.1	2.6e-07	56.76	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.1	9.7e-07	60.61	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.2	9.7e-07	60.61	RPM1-interacting protein 4 (RIN4) family protein	[more]
AT5G55850.3	9.7e-07	60.61	RPM1-interacting protein 4 (RIN4) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR008700	RIN4, pathogenic type III effector avirulence factor Avr cleavage site	PFAM	PF05627	AvrRpt-cleavage	coord: 144..175 e-value: 6.7E-15 score: 54.1
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 37..138
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 178..213
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 63..112
None	No IPR available	PANTHER	PTHR33159:SF49	OS06G0636100 PROTEIN	coord: 5..211
IPR040387	RPM1-interacting protein 4/NOI4	PANTHER	PTHR33159	RPM1-INTERACTING PROTEIN 4 (RIN4) FAMILY PROTEIN	coord: 5..211

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G211460	Chy12G211460	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G211460.1.exon1	Chy12G211460.1.exon1	exon
Chy12G211460.1.exon2	Chy12G211460.1.exon2	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G211460.1.cds1	Chy12G211460.1.cds1	CDS
Chy12G211460.1.cds2	Chy12G211460.1.cds2	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G211460.1	Chy12G211460.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005886	plasma membrane