Chy12G211060.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G211060.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	COX assembly mitochondrial protein
Location	chrH12: 6896038 .. 6896746 (+)
Sequence length	709
RNA-Seq Expression	Chy12G211060.1
Synteny	Chy12G211060.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

AAATACTTCTCTTCCTCCCTAAATGGTGTGGGACACCGTTGCGACAACGGAAAGAAAGAGATGTTACCAATCGGTGAATCTCTGTTAGGTGCTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAATGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCATTGAAATCAGTTTAGAAAAATGGGAAAGCTGTAGGTTGGGGATCGCATCGGGGAAGATGGATTAATGAGTATGCGAAGATAATGGAGCACTCGTGTTTTTAAAATTTCCTTAGAACAAACAAATCTTCAAACATGATTGAAGTTGAAGGTCTGATCCTGAGAATTGAGAAAGAATGTGAATTCATACCCCTTATCGAGGAGAAAAACATCAAAATTGTTGAATATACCGAGTGAAATTCCTTCCGAGTCGCATAATTTTGTCATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTAATTGATATCAATTGGAATTCTCAATGTCAAACTCTGAATTTTGTTCAAAT

mRNA sequence

AAATACTTCTCTTCCTCCCTAAATGGTGTGGGACACCGTTGCGACAACGGAAAGAAAGAGATGTTACCAATCGGTGAATCTCTGTTAGGTGCTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAATGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCATTGAAATCAGTTTAGAAAAATGGGAAAGCTGTAGGTTGGGGATCGCATCGGGGAAGATGGATTAATGAGTATGCGAAGATAATGGAGCACTCGTGTTTTTAAAATTTCCTTAGAACAAACAAATCTTCAAACATGATTGAAGTTGAAGGTCTGATCCTGAGAATTGAGAAAGAATGTGAATTCATACCCCTTATCGAGGAGAAAAACATCAAAATTGTTGAATATACCGAGTGAAATTCCTTCCGAGTCGCATAATTTTGTCATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTAATTGATATCAATTGGAATTCTCAATGTCAAACTCTGAATTTTGTTCAAAT

Coding sequence (CDS)

AAATACTTCTCTTCCTCCCTAAATGGTGTGGGACACCGTTGCGACAACGGAAAGAAAGAGATGTTACCAATCGGTGAATCTCTGTTAGGTGCTGACGGTGGCTGCGATCGCCTGGAACAAGCTCTCCGAGAATGTCACAAGCGAGTTCCAGAAGGTCCGGCCCGGCGGTCAGCCTGCCGACACCTGAACCGATCTCTTGCTGAGTGTCTGGTGGCGACGGCTTGTCCTAGCGAGGCGGAGGCGGTACGAACCCTCTGCTCCAGCGGCGGAACCGCTCTCAAGAGATCGCAGTGCGAGCAAGCTAAGTTTTCGCTCTCTTTCTGCCTCTCCTCTCTACAATTTTGAAACCCTAGATCATTGAAATCAGTTTAGAAAAATGGGAAAGCTGTAGGTTGGGGATCGCATCGGGGAAGATGGATTAATGAGTATGCGAAGATAATGGAGCACTCGTGTTTTTAAAATTTCCTTAGAACAAACAAATCTTCAAACATGATTGAAGTTGAAGGTCTGATCCTGAGAATTGAGAAAGAATGTGAATTCATACCCCTTATCGAGGAGAAAAACATCAAAATTGTTGAATATACCGAGTGAAATTCCTTCCGAGTCGCATAATTTTGTCATTAGCAACTATATATTTTGGTTTTGTTATAGAACATCTAATTGATATCAATTGGAATTCTCAATGTCAAACTCTGAATTTTGTTCAAAT

Protein sequence

KYFSSSLNGVGHRCDNGKKEMLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF*NPRSLKSV*KNGKAVGWGSHRGRWINEYAKIMEHSCF*NFLRTNKSSNMIEVEGLILRIEKECEFIPLIEEKNIKIVEYTE*NSFRVA*FCH*QLYILVLL*NI*LISIGILNVKL*ILFKX

Homology

[Close]

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL
Match: A0A0A0LYC1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 2.3e-43
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           MLP+GES LG DGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 115
           AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL
Match: A0A5D3CLT3 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold302G00190 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           MLPIGES +  D GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 115
           AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL
Match: A0A1S3C8S8 (uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=4 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.1e-40
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           MLPIGES +  D GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 115
           AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL
Match: A0A6J1K2P5 (uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-36
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           M+P G++ +G DGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 114
           AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL
Match: A0A6J1CN74 (uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012670 PE=4 SV=1)

HSP 1 Score: 161.4 bits (407), Expect = 4.7e-36
Identity = 79/95 (83.16%), Postives = 88/95 (92.63%), Query Frame = 0


Query: 21  MLPIGESLL--GADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE 80
           MLP GE+ +  G  GGC+RLEQALR+CH+RVP+GPARRSACRHLNRSLAECLVATACP+E
Sbjct: 14  MLPTGEAPISGGGVGGCERLEQALRDCHRRVPDGPARRSACRHLNRSLAECLVATACPNE 73

Query: 81  AEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 114
           AEAVRTLCS+ GTALKRSQC+QAKFSLSFCLSSLQ
Sbjct: 74  AEAVRTLCSTAGTALKRSQCQQAKFSLSFCLSSLQ 108

[Close]

BLAST of Chy12G211060.1 vs. NCBI nr
Match: XP_004145445.1 (uncharacterized protein LOC101219184 [Cucumis sativus])

HSP 1 Score: 183 bits (465), Expect = 7.70e-56
Identity = 91/94 (96.81%), Postives = 92/94 (97.87%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           MLP+GES LG DGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE
Sbjct: 1   MLPMGESPLGGDGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 114
           AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Chy12G211060.1 vs. NCBI nr
Match: XP_038893663.1 (uncharacterized protein LOC120082530 [Benincasa hispida])

HSP 1 Score: 180 bits (456), Expect = 2.08e-54
Identity = 89/98 (90.82%), Postives = 93/98 (94.90%), Query Frame = 0


Query: 17  GKKEMLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACP 76
           GKKEMLP G + +  DGGC+RLEQALRECHKR+PEGPARRSACRHLNRSLAECLVATACP
Sbjct: 2   GKKEMLPTGGASICGDGGCERLEQALRECHKRLPEGPARRSACRHLNRSLAECLVATACP 61

Query: 77  SEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 114
           SEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 62  SEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 99

[Close]

BLAST of Chy12G211060.1 vs. NCBI nr
Match: XP_008459043.1 (PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 uncharacterized protein E6C27_scaffold110G00780 [Cucumis melo var. makuwa] >TYK12262.1 uncharacterized protein E5676_scaffold302G00190 [Cucumis melo var. makuwa])

HSP 1 Score: 174 bits (442), Expect = 2.37e-52
Identity = 87/94 (92.55%), Postives = 89/94 (94.68%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           MLPIGES +  D GC+RLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSE E
Sbjct: 1   MLPIGESPMCGDDGCERLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEVE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 114
           AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQF 94

[Close]

BLAST of Chy12G211060.1 vs. NCBI nr
Match: XP_023542217.1 (uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 159 bits (403), Expect = 1.91e-46
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           M+P G++ +G DGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCGHLNRSFAECLVATVCPNEAE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 113
           AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of Chy12G211060.1 vs. NCBI nr
Match: XP_022994930.1 (uncharacterized protein LOC111490507 [Cucurbita maxima])

HSP 1 Score: 159 bits (402), Expect = 2.71e-46
Identity = 76/93 (81.72%), Postives = 84/93 (90.32%), Query Frame = 0


Query: 21  MLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLNRSLAECLVATACPSEAE 80
           M+P G++ +G DGGC+RLEQALR+CHKR+PEGPARRS C HLNRS AECLVAT CP+EAE
Sbjct: 1   MVPTGKAPIGGDGGCERLEQALRDCHKRLPEGPARRSGCWHLNRSFAECLVATVCPNEAE 60

Query: 81  AVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 113
           AVRTLCSSGGTALKRSQCEQAKFS S CLSSLQ
Sbjct: 61  AVRTLCSSGGTALKRSQCEQAKFSFSLCLSSLQ 93

[Close]

BLAST of Chy12G211060.1 vs. TAIR 10
Match: AT1G31175.1 (unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 20; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 125.2 bits (313), Expect = 7.1e-29
Identity = 63/110 (57.27%), Postives = 78/110 (70.91%), Query Frame = 0


Query: 4   SSSLNGVGHRCDNGKKEMLPIGESLLGADGGCDRLEQALRECHKRVPEGPARRSACRHLN 63
           +S L+    R   GK   +P+          CDRLE+AL +CH+R+PEGPARRS CRHLN
Sbjct: 11  TSELHREMRRIHTGKIREIPM--------KSCDRLEEALLQCHRRMPEGPARRSGCRHLN 70

Query: 64  RSLAECLVATACPSEAEAVRTLCSSGGTALKRSQCEQAKFSLSFCLSSLQ 114
           ++ AEC+VA ACP E+EAVR+LCSSGGT+LKR QCE A+ SLS CLS  Q
Sbjct: 71  KAFAECVVAEACPEESEAVRSLCSSGGTSLKRKQCEYAQLSLSLCLSRHQ 112

The following BLAST results are available for this feature:

BLAST of Chy12G211060.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy12G211060.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LYC1	2.3e-43	96.81	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G702000 PE=4 SV=1	[more]
A0A5D3CLT3	1.1e-40	92.55	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3C8S8	1.1e-40	92.55	uncharacterized protein LOC103498267 OS=Cucumis melo OX=3656 GN=LOC103498267 PE=...	[more]
A0A6J1K2P5	4.7e-36	81.72	uncharacterized protein LOC111490507 OS=Cucurbita maxima OX=3661 GN=LOC111490507...	[more]
A0A6J1CN74	4.7e-36	83.16	uncharacterized protein LOC111012670 OS=Momordica charantia OX=3673 GN=LOC111012...	[more]

BLAST of Chy12G211060.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004145445.1	7.70e-56	96.81	uncharacterized protein LOC101219184 [Cucumis sativus]	[more]
XP_038893663.1	2.08e-54	90.82	uncharacterized protein LOC120082530 [Benincasa hispida]	[more]
XP_008459043.1	2.37e-52	92.55	PREDICTED: uncharacterized protein LOC103498267 [Cucumis melo] >KAA0043206.1 unc...	[more]
XP_023542217.1	1.91e-46	81.72	uncharacterized protein LOC111802182 [Cucurbita pepo subsp. pepo]	[more]
XP_022994930.1	2.71e-46	81.72	uncharacterized protein LOC111490507 [Cucurbita maxima]	[more]

BLAST of Chy12G211060.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G31175.1	7.1e-29	57.27	unknown protein; Has 20 Blast hits to 20 proteins in 10 species: Archae - 0; Bac...	[more]

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G211060	Chy12G211060	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G211060.1.exon1	Chy12G211060.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G211060.1.cds1	Chy12G211060.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G211060.1	Chy12G211060.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0005739	mitochondrion