Chy12G209570.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy12G209570.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	transcription termination factor MTEF1, chloroplastic
Location	chrH12: 3847013 .. 3847927 (+)
Sequence length	915
RNA-Seq Expression	Chy12G209570.1
Synteny	Chy12G209570.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTCTTCTTCATCTGCAACTGCTTTCCATTCTTCTTTCTGTTTCTCTTCTCATAATAAACTTTCTTCTTCTCCCTCAAATTCCCATCAACCAAACACTTCCTTATCACCCAAACCCAAAACCCTTCTCCATAAACATCCTCTCTACACACCACTTCATTCCACAGTCTCTTCTCAAACCAAAGAGAAAATTCTCTGTCTTGAAATCATGGGTGTTGATTCTGGCAAAGCTCTTTCTCAAAACCCTTCTCTTCATTCTGTTACTCTTGAATCCATTCACTCTGTCATCTCCTTCCTCCAATCTAGAGGCATTCACCAAAAAGACTTCGCCAAAATCTTTGGAATGTGTCCTAAAATCCTCACTTCAGATGTTAAAACTGATTTAATACCAGTTTTCGACTTTCTCTCTGAAGATCTCAAAATCCCAGATCAGAACTTTAGAAAAGCTATCAATAAGTGCCCAAGATTGCTTGCTTCAAGTGCTGAAGATCAGTTGAAACCTGCTTTGTTTTATCTTCAAAGACTTGGGTTGAAGGATTTGGAGGCTTTGGCTTATCATGATTCTGTGTTGCTGGTTTCAAGTGTGGAGAAGACCTTGATTCCTAAACTCAAGTATTTGGAGAGTTTGGGATTCACAAGGAGTGAAACCGTTGGGATGGTATTAAGGTGTCCAGCTCTGCTTACTTTCAGTATCGAAAACAATTTCAAGCCAAAGTTTGAGTATTTCTCTATGGAGATGCATAGAAAACTTGAGGAGCTTAAGGATTTTCCTCAGTATTTTGCCTTTAGCTTGGAGAAGAGGATAAAGCCGAGGTATGTGGAGACAGTGGAGAGTGGAAAAAAAGTGCCTTTGTCACTTATGCTTAAGACCACAGATGTTGAGTTTAGAGAGTTGTTAGCAGAAGGGGGTGGTTGA

mRNA sequence

ATGTCTTCTTCATCTGCAACTGCTTTCCATTCTTCTTTCTGTTTCTCTTCTCATAATAAACTTTCTTCTTCTCCCTCAAATTCCCATCAACCAAACACTTCCTTATCACCCAAACCCAAAACCCTTCTCCATAAACATCCTCTCTACACACCACTTCATTCCACAGTCTCTTCTCAAACCAAAGAGAAAATTCTCTGTCTTGAAATCATGGGTGTTGATTCTGGCAAAGCTCTTTCTCAAAACCCTTCTCTTCATTCTGTTACTCTTGAATCCATTCACTCTGTCATCTCCTTCCTCCAATCTAGAGGCATTCACCAAAAAGACTTCGCCAAAATCTTTGGAATGTGTCCTAAAATCCTCACTTCAGATGTTAAAACTGATTTAATACCAGTTTTCGACTTTCTCTCTGAAGATCTCAAAATCCCAGATCAGAACTTTAGAAAAGCTATCAATAAGTGCCCAAGATTGCTTGCTTCAAGTGCTGAAGATCAGTTGAAACCTGCTTTGTTTTATCTTCAAAGACTTGGGTTGAAGGATTTGGAGGCTTTGGCTTATCATGATTCTGTGTTGCTGGTTTCAAGTGTGGAGAAGACCTTGATTCCTAAACTCAAGTATTTGGAGAGTTTGGGATTCACAAGGAGTGAAACCGTTGGGATGGTATTAAGGTGTCCAGCTCTGCTTACTTTCAGTATCGAAAACAATTTCAAGCCAAAGTTTGAGTATTTCTCTATGGAGATGCATAGAAAACTTGAGGAGCTTAAGGATTTTCCTCAGTATTTTGCCTTTAGCTTGGAGAAGAGGATAAAGCCGAGGTATGTGGAGACAGTGGAGAGTGGAAAAAAAGTGCCTTTGTCACTTATGCTTAAGACCACAGATGTTGAGTTTAGAGAGTTGTTAGCAGAAGGGGGTGGTTGA

Coding sequence (CDS)

ATGTCTTCTTCATCTGCAACTGCTTTCCATTCTTCTTTCTGTTTCTCTTCTCATAATAAACTTTCTTCTTCTCCCTCAAATTCCCATCAACCAAACACTTCCTTATCACCCAAACCCAAAACCCTTCTCCATAAACATCCTCTCTACACACCACTTCATTCCACAGTCTCTTCTCAAACCAAAGAGAAAATTCTCTGTCTTGAAATCATGGGTGTTGATTCTGGCAAAGCTCTTTCTCAAAACCCTTCTCTTCATTCTGTTACTCTTGAATCCATTCACTCTGTCATCTCCTTCCTCCAATCTAGAGGCATTCACCAAAAAGACTTCGCCAAAATCTTTGGAATGTGTCCTAAAATCCTCACTTCAGATGTTAAAACTGATTTAATACCAGTTTTCGACTTTCTCTCTGAAGATCTCAAAATCCCAGATCAGAACTTTAGAAAAGCTATCAATAAGTGCCCAAGATTGCTTGCTTCAAGTGCTGAAGATCAGTTGAAACCTGCTTTGTTTTATCTTCAAAGACTTGGGTTGAAGGATTTGGAGGCTTTGGCTTATCATGATTCTGTGTTGCTGGTTTCAAGTGTGGAGAAGACCTTGATTCCTAAACTCAAGTATTTGGAGAGTTTGGGATTCACAAGGAGTGAAACCGTTGGGATGGTATTAAGGTGTCCAGCTCTGCTTACTTTCAGTATCGAAAACAATTTCAAGCCAAAGTTTGAGTATTTCTCTATGGAGATGCATAGAAAACTTGAGGAGCTTAAGGATTTTCCTCAGTATTTTGCCTTTAGCTTGGAGAAGAGGATAAAGCCGAGGTATGTGGAGACAGTGGAGAGTGGAAAAAAAGTGCCTTTGTCACTTATGCTTAAGACCACAGATGTTGAGTTTAGAGAGTTGTTAGCAGAAGGGGGTGGTTGA

Protein sequence

MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTKEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKILTSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLAEGGG*

Homology

[Close]

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot
Match: Q84X53 (Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF1 PE=2 SV=2)

HSP 1 Score: 219.9 bits (559), Expect = 3.9e-56
Identity = 116/242 (47.93%), Postives = 166/242 (68.60%), Query Frame = 0


Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           +EK++ L+ + VD  KAL  NPSL S  + S+ SV + L S G+ +    +I  M P +L
Sbjct: 34  REKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL 93

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSD +++++PV  FLS ++ I +Q+  K+I++CPRLL SS + QL+PAL +L+ LG    
Sbjct: 94  TSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 153

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYL-ESLGFTRSETVGMVLRCPALLTFSIENNFKPKF 240
           + +   ++VLLVS+VE+TLIPK++YL E LGFTR E   MV+R PALLT+S++NN  PK 
Sbjct: 154 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 213

Query: 241 EYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELL 300
           E+F  EM   ++ELK FPQYF+FSLE++IKPR+    E G  +PLS MLK +D +F   L
Sbjct: 214 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 273

Query: 301 AE 302
            E
Sbjct: 274 LE 275

[Close]

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot
Match: F4JVI3 (Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF5 PE=1 SV=1)

HSP 1 Score: 114.0 bits (284), Expect = 3.0e-24
Identity = 74/239 (30.96%), Postives = 129/239 (53.97%), Query Frame = 0


Query: 62  EKILCLEIMGVDSGKALSQNPSLHSVTL-ESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 121
           E +L L I   D    L + P +  ++L +++   ++FL++ GI +  +AKI    P IL
Sbjct: 237 EFLLDLGIPKSDIPTILCKRPQICGISLTDNLKPTMAFLETLGIDKNQWAKIISRFPAIL 296

Query: 122 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 181
           T   +  L    +FLS+   + ++   + + +CP +++ S ED+L+P + Y + L + D+
Sbjct: 297 TYS-RQKLTSTVEFLSQ-TGLTEEQIGRILTRCPNIMSYSVEDKLRPTMEYFRSLNV-DV 356

Query: 182 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 241
             L +        S+E  L P  ++    GF   E   M+ R  AL TFS++ N  PK++
Sbjct: 357 AVLLHRCPQTFGLSIESNLKPVTEFFLEKGFGLDEIGIMISRYGALYTFSLKENVMPKWD 416

Query: 242 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELL 300
           YF    + K  EL  FPQ+F +SL++RIKPRY     SG ++ L+ +L  + +EF +++
Sbjct: 417 YFQTMDYPK-SELVKFPQFFGYSLQERIKPRYELVQRSGVRLLLNQVLSLSGIEFEKVV 471

[Close]

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot
Match: F4IHL3 (Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF2 PE=3 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.0e-20
Identity = 73/242 (30.17%), Postives = 126/242 (52.07%), Query Frame = 0


Query: 61  KEKILCLEIMGVDS---GKALSQNPSLHSVTLES-IHSVISFLQSRGIHQKDFAKIFGMC 120
           ++KI  L+  G+ +   G+ L+  P L   ++E     ++ +    GI ++   +I  + 
Sbjct: 353 EKKINYLKEFGLSTEEVGRLLAYKPHLMGCSIEERWKPLVKYFYYLGIPKEGMKRILVVK 412

Query: 121 PKILTSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKP-ALFYLQRL 180
           P +   D++  + P   FL E + IP++     + K P LL +S   +++P  +F L R 
Sbjct: 413 PILYCIDLEKTIAPKVRFLQE-MGIPNEAIGNMLVKFPSLLTNSLYKKIRPVVIFLLTRA 472

Query: 181 GL--KDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIEN 240
           G+  KD+  +   D  LL  S+   L P ++Y  SLG    +   M+   P LL ++++ 
Sbjct: 473 GVTQKDIGKVIAMDPALLGCSIGTKLEPNMRYYISLGIRFYQLGEMIADFPMLLRYNVD- 532

Query: 241 NFKPKFEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDV 296
           N +PK+ Y    M R L++L +FP++F++SLE+RI PR+   VE+     L  ML  TD 
Sbjct: 533 NLRPKYRYLRRTMIRPLQDLIEFPRFFSYSLERRIIPRHTIMVENRVNFKLRYMLACTDE 592

[Close]

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot
Match: Q9ZT96 (Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=MTERF4 PE=1 SV=1)

HSP 1 Score: 90.5 bits (223), Expect = 3.5e-17
Identity = 69/273 (25.27%), Postives = 122/273 (44.69%), Query Frame = 0


Query: 67  LEIMGVDSGKALSQNPSLHSVTLESIHSV-ISFLQSRGIHQKDFAKIFGMCPKILTSDVK 126
           L+I   D  + L + P +    LE   S  +++L   G+ +++   I    P+IL   V 
Sbjct: 225 LDIKPSDVPRVLERYPEVLGFKLEGTMSTSVAYLVGIGVARREIGGILTRYPEILGMRVA 284

Query: 127 TDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL---EA 186
             + P+ ++L E L IP     + I K P +L    +D +KP +  LQ   +++      
Sbjct: 285 RIIKPLVEYL-EVLGIPRLAAARLIEKRPHILGFELDDTVKPNVQILQDFNVRETSLPSI 344

Query: 187 LAYHDSVL-----------------------------------LVSSVEKTLIPKLKYLE 246
           +A +  ++                                    VS  E  ++  + +L 
Sbjct: 345 IAQYPEIIGIDLKPKLDTQRKLLCSAIHLNPEDLGSLIERMPQFVSLSESPMLKHIDFLT 404

Query: 247 SLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSMEMHRKLEELKDFPQYFAFSLEKR 301
             GF+  +T  MV+ CP +L  ++    K  FEYF  EM R L++L DFP +F + LE  
Sbjct: 405 KCGFSIDQTREMVIGCPQVLALNL-GIMKLSFEYFQKEMKRPLQDLVDFPAFFTYGLEST 464

[Close]

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot
Match: Q6AUK6 (Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=Os05g0404000 PE=2 SV=1)

HSP 1 Score: 86.7 bits (213), Expect = 5.1e-16
Identity = 80/299 (26.76%), Postives = 131/299 (43.81%), Query Frame = 0


Query: 42  LLHKHPLYTPLHSTVSSQTKEKILCLEIMGV---DSGKALSQNPSLHSVTLESIHSV-IS 101
           LL ++P    LH++V       +  L+ M V   D  + L + P L    LE   S  I+
Sbjct: 164 LLRRYP--QVLHASVVVDLAPVVKYLQGMDVRPHDVPRVLERYPELLGFKLEGTMSTSIA 223

Query: 102 FLQSRGIHQKDFAKIFGMCPKILTSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLL 161
           +L   G+ ++    +    P++L   V   + P  + L E + +      + I K P +L
Sbjct: 224 YLVGIGVARRQVGSVITRFPEVLGMRVGKIIKPFVEHL-EGIGLQRLAIARIIEKKPYVL 283

Query: 162 ASSAEDQLKPALFYLQRLGLKDLEALAY-----------------------HDSVLLVSS 221
               ED++KP +  L   G++  EALA+                        +S +LVSS
Sbjct: 284 GFGLEDKVKPNIEALLEFGVRK-EALAFIVAQYPDILGIELRDKLATQQSLFESSILVSS 343

Query: 222 VE----------------KTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPK 281
            +                  ++  + +L S GF  S+   MV+ CP LL  +++   K  
Sbjct: 344 EDFGRVIERMPQAISLGRTAVLKHVNFLTSCGFLLSQVSKMVVACPQLLALNMD-IMKMS 403

Query: 282 FEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRE 298
           FEYF  EM R LEEL +FP +F + LE  ++PR+    + G    L+ +L  +D +F E
Sbjct: 404 FEYFQNEMERDLEELVEFPAFFTYGLESTVRPRHEMVAKKGFTCSLAWLLNCSDAKFDE 457

[Close]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL
Match: A0A0A0LVD4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535790 PE=3 SV=1)

HSP 1 Score: 580.9 bits (1496), Expect = 3.2e-162
Identity = 298/304 (98.03%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDL+PVF+FLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLVPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSE VGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSEIVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMH+KLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA
Sbjct: 241 YFSVEMHKKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300

Query: 301 EGGG 305
           EGGG
Sbjct: 301 EGGG 304

[Close]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL
Match: A0A5D3DB89 (Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold480G001070 PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 7.1e-162
Identity = 298/304 (98.03%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHST+SSQT
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTLSSQT 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVDSGKALSQNPSLH VTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDLIPVF+FLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMHRKLEELKDFPQYFAFSLEKRIKPR+VETVESGKKVPLSLMLKTTDVEFRELLA
Sbjct: 241 YFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFRELLA 300

Query: 301 EGGG 305
           EGGG
Sbjct: 301 EGGG 304

[Close]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL
Match: A0A1S3BBS5 (transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103487950 PE=3 SV=1)

HSP 1 Score: 579.7 bits (1493), Expect = 7.1e-162
Identity = 298/304 (98.03%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHST+SSQT
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTLSSQT 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVDSGKALSQNPSLH VTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDLIPVF+FLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMHRKLEELKDFPQYFAFSLEKRIKPR+VETVESGKKVPLSLMLKTTDVEFRELLA
Sbjct: 241 YFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFRELLA 300

Query: 301 EGGG 305
           EGGG
Sbjct: 301 EGGG 304

[Close]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL
Match: A0A6J1CE81 (transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111010694 PE=3 SV=1)

HSP 1 Score: 527.7 bits (1358), Expect = 3.2e-146
Identity = 275/308 (89.29%), Postives = 291/308 (94.48%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSP----SNSHQPNTSLSPKPKTLLHKHPLYTPLHSTV 60
           M +++ATAFHSSFCFSSH KLSSSP    SNSHQPNT L+ KPKTL HKHPLYTPLHST+
Sbjct: 1   MPAATATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTLLAAKPKTLFHKHPLYTPLHSTL 60

Query: 61  SSQTKEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMC 120
           SSQ KEKILCLEIMGVD+GKALS NPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMC
Sbjct: 61  SSQVKEKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMC 120

Query: 121 PKILTSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLG 180
           PKILTSDVKTDLIPVF+FLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLG
Sbjct: 121 PKILTSDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLG 180

Query: 181 LKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFK 240
           L+DLEALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSETVGMVLRCPALLTFSIENNFK
Sbjct: 181 LRDLEALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFK 240

Query: 241 PKFEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFR 300
           PKFEYFS EMH KLEELKDFPQYFAFSLEKRIKPRY+ETV+SGKKVPLSLMLKTTD EFR
Sbjct: 241 PKFEYFSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFR 300

Query: 301 ELLAEGGG 305
           ELL EG G
Sbjct: 301 ELLREGQG 307

[Close]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL
Match: A0A6J1EFX2 (transcription termination factor MTEF1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111433963 PE=3 SV=1)

HSP 1 Score: 502.7 bits (1293), Expect = 1.1e-138
Identity = 260/299 (86.96%), Postives = 274/299 (91.64%), Query Frame = 0


Query: 6   ATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTKEKIL 65
           A AF SSFCFSSH +LS+SPSNS QPNT L+ KPK+L HKHPLYTPLHST+SSQ KEKIL
Sbjct: 3   AAAFPSSFCFSSH-ELSASPSNSQQPNTFLAAKPKSLFHKHPLYTPLHSTLSSQIKEKIL 62

Query: 66  CLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKILTSDVK 125
           CLEIMGVD+GKALSQNPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKILTSDVK
Sbjct: 63  CLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILTSDVK 122

Query: 126 TDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAY 185
            DLIPVF FLSEDLKIPDQNFR+ INKCPRLLASSA+DQLKPALFYLQRLG KDLEALAY
Sbjct: 123 ADLIPVFSFLSEDLKIPDQNFRRVINKCPRLLASSAKDQLKPALFYLQRLGFKDLEALAY 182

Query: 186 HDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSME 245
            DS LLVSSVEKTLIPKLKYL+SLGF+RSETVGMVLRCPALLTFSIENN KPKFEYFS E
Sbjct: 183 QDSALLVSSVEKTLIPKLKYLQSLGFSRSETVGMVLRCPALLTFSIENNLKPKFEYFSGE 242

Query: 246 MHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLAEGGG 305
           M RK+EELKDFPQYF FSLEKRIKPRYVETV+SGK V L LMLK TD EF+ELL E GG
Sbjct: 243 MQRKVEELKDFPQYFGFSLEKRIKPRYVETVQSGKNVALPLMLKATDDEFKELLREEGG 300

[Close]

BLAST of Chy12G209570.1 vs. NCBI nr
Match: XP_004154376.1 (transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN65875.1 hypothetical protein Csa_023269 [Cucumis sativus])

HSP 1 Score: 576 bits (1484), Expect = 1.23e-206
Identity = 298/304 (98.03%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDL+PVF+FLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLVPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSE VGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSEIVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMH+KLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA
Sbjct: 241 YFSVEMHKKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300

Query: 301 EGGG 304
           EGGG
Sbjct: 301 EGGG 304

[Close]

BLAST of Chy12G209570.1 vs. NCBI nr
Match: XP_008444692.1 (PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] >KAA0054024.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa] >TYK20710.1 transcription termination factor MTEF1 [Cucumis melo var. makuwa])

HSP 1 Score: 575 bits (1481), Expect = 3.54e-206
Identity = 298/304 (98.03%), Postives = 303/304 (99.67%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHST+SSQT
Sbjct: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTLSSQT 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVDSGKALSQNPSLH VTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDSGKALSQNPSLHCVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDLIPVF+FLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLIPVFNFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMHRKLEELKDFPQYFAFSLEKRIKPR+VETVESGKKVPLSLMLKTTDVEFRELLA
Sbjct: 241 YFSVEMHRKLEELKDFPQYFAFSLEKRIKPRHVETVESGKKVPLSLMLKTTDVEFRELLA 300

Query: 301 EGGG 304
           EGGG
Sbjct: 301 EGGG 304

[Close]

BLAST of Chy12G209570.1 vs. NCBI nr
Match: XP_038895185.1 (transcription termination factor MTEF1, chloroplastic [Benincasa hispida])

HSP 1 Score: 529 bits (1362), Expect = 4.65e-188
Identity = 277/304 (91.12%), Postives = 289/304 (95.07%), Query Frame = 0


Query: 1   MSSSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT 60
           M SS+ATAFHSSFCFSSH KLSSS S+SHQPNT LS KPKTL HKHPLYTPLHST+SSQ 
Sbjct: 1   MPSSTATAFHSSFCFSSH-KLSSSSSSSHQPNTFLSAKPKTLFHKHPLYTPLHSTLSSQI 60

Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           KEKILCLEIMGVD+GKALSQNPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKIL
Sbjct: 61  KEKILCLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKIL 120

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSDVKTDLIPVF+FLSEDLKIPDQNFR+AINKCPRLLASS +DQLKPALFYLQRLGLKDL
Sbjct: 121 TSDVKTDLIPVFNFLSEDLKIPDQNFRRAINKCPRLLASSPKDQLKPALFYLQRLGLKDL 180

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFE 240
           EALAY DSVLLVSSVEKTLIPKLKYLESLG +RSETVGMVLRCPALLTFSIENNFKPKFE
Sbjct: 181 EALAYRDSVLLVSSVEKTLIPKLKYLESLGLSRSETVGMVLRCPALLTFSIENNFKPKFE 240

Query: 241 YFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLA 300
           YFS+EMHRKLEELKDFPQYFAFSLEKRIKPRYVETV SGKKVPL LMLKTTD EFR+LL 
Sbjct: 241 YFSVEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVRSGKKVPLPLMLKTTDDEFRQLLT 300

Query: 301 EGGG 304
           +G G
Sbjct: 301 QGDG 303

[Close]

BLAST of Chy12G209570.1 vs. NCBI nr
Match: XP_022139889.1 (transcription termination factor MTEF1, chloroplastic [Momordica charantia])

HSP 1 Score: 523 bits (1346), Expect = 1.59e-185
Identity = 274/303 (90.43%), Postives = 287/303 (94.72%), Query Frame = 0


Query: 6   ATAFHSSFCFSSHNKLSSSPSNSH----QPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTK 65
           ATAFHSSFCFSSH KLSSSPSNSH    QPNT L+ KPKTL HKHPLYTPLHST+SSQ K
Sbjct: 6   ATAFHSSFCFSSH-KLSSSPSNSHSNSHQPNTLLAAKPKTLFHKHPLYTPLHSTLSSQVK 65

Query: 66  EKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKILT 125
           EKILCLEIMGVD+GKALS NPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKILT
Sbjct: 66  EKILCLEIMGVDAGKALSLNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILT 125

Query: 126 SDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLE 185
           SDVKTDLIPVF+FLSEDLKIPDQ+FR+ INKCPRLLASSA+DQLKPALFYLQRLGL+DLE
Sbjct: 126 SDVKTDLIPVFNFLSEDLKIPDQSFRRTINKCPRLLASSAKDQLKPALFYLQRLGLRDLE 185

Query: 186 ALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEY 245
           ALAYHDSVLLVSSVE+TLIPKLKYLESLGF+RSETVGMVLRCPALLTFSIENNFKPKFEY
Sbjct: 186 ALAYHDSVLLVSSVERTLIPKLKYLESLGFSRSETVGMVLRCPALLTFSIENNFKPKFEY 245

Query: 246 FSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLAE 304
           FS EMH KLEELKDFPQYFAFSLEKRIKPRY+ETV+SGKKVPLSLMLKTTD EFRELL E
Sbjct: 246 FSGEMHGKLEELKDFPQYFAFSLEKRIKPRYLETVQSGKKVPLSLMLKTTDDEFRELLRE 305

[Close]

BLAST of Chy12G209570.1 vs. NCBI nr
Match: XP_022927002.1 (transcription termination factor MTEF1, chloroplastic-like [Cucurbita moschata] >XP_023519150.1 transcription termination factor MTEF1, chloroplastic-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 498 bits (1282), Expect = 6.40e-176
Identity = 260/299 (86.96%), Postives = 274/299 (91.64%), Query Frame = 0


Query: 6   ATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTKEKIL 65
           A AF SSFCFSSH +LS+SPSNS QPNT L+ KPK+L HKHPLYTPLHST+SSQ KEKIL
Sbjct: 3   AAAFPSSFCFSSH-ELSASPSNSQQPNTFLAAKPKSLFHKHPLYTPLHSTLSSQIKEKIL 62

Query: 66  CLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKILTSDVK 125
           CLEIMGVD+GKALSQNPSLHSVTLESIHSVISFLQS+GIHQKDFAKIFGMCPKILTSDVK
Sbjct: 63  CLEIMGVDAGKALSQNPSLHSVTLESIHSVISFLQSKGIHQKDFAKIFGMCPKILTSDVK 122

Query: 126 TDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAY 185
            DLIPVF FLSEDLKIPDQNFR+ INKCPRLLASSA+DQLKPALFYLQRLG KDLEALAY
Sbjct: 123 ADLIPVFSFLSEDLKIPDQNFRRVINKCPRLLASSAKDQLKPALFYLQRLGFKDLEALAY 182

Query: 186 HDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSME 245
            DS LLVSSVEKTLIPKLKYL+SLGF+RSETVGMVLRCPALLTFSIENN KPKFEYFS E
Sbjct: 183 QDSALLVSSVEKTLIPKLKYLQSLGFSRSETVGMVLRCPALLTFSIENNLKPKFEYFSGE 242

Query: 246 MHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELLAEGGG 304
           M RK+EELKDFPQYF FSLEKRIKPRYVETV+SGK V L LMLK TD EF+ELL E GG
Sbjct: 243 MQRKVEELKDFPQYFGFSLEKRIKPRYVETVQSGKNVALPLMLKATDDEFKELLREEGG 300

[Close]

BLAST of Chy12G209570.1 vs. TAIR 10
Match: AT2G34620.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 367.1 bits (941), Expect = 1.4e-101
Identity = 191/283 (67.49%), Postives = 224/283 (79.15%), Query Frame = 0


Query: 20  KLSSSPSNSHQPNTSLSPKP---KTLLHKHPLYTPLHSTVSSQTKEKILCLEIMGVDSGK 79
           K  S P  S   +T LS KP   KT LH HPL+T    TV+ Q KEKILCLE+MG+DSGK
Sbjct: 14  KKPSCPQQSQ--STFLSTKPTTIKTNLHSHPLFTVADQTVTLQMKEKILCLELMGIDSGK 73

Query: 80  ALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKILTSDVKTDLIPVFDFLS 139
           ALS NP L S  L+SI SV+ FLQS+GI+  D  +I GMCPKILTSDV+T+L PVF FLS
Sbjct: 74  ALSLNPCLCSAPLDSIQSVLHFLQSKGIYPNDLPRILGMCPKILTSDVRTELYPVFMFLS 133

Query: 140 EDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAYHDSVLLVSSVE 199
            DL +P+  FR+ I KCPRLL SS EDQLKPALFYLQRLGLKDLEALAY D +LLVSSVE
Sbjct: 134 NDLHVPENAFRRVIKKCPRLLISSVEDQLKPALFYLQRLGLKDLEALAYQDPILLVSSVE 193

Query: 200 KTLIPKLKYLESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSMEMHRKLEELKDF 259
            TLIPKL++LES+GF+R E +GM+LRCPAL TFSIENNFKPK +YF  E+  KLE LK+F
Sbjct: 194 HTLIPKLRFLESIGFSRPEAIGMILRCPALFTFSIENNFKPKLDYFMSEIKGKLENLKEF 253

Query: 260 PQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELL 300
           PQYFAFSLEKRIKPR++E++E G ++PLSLMLK+TD EF +LL
Sbjct: 254 PQYFAFSLEKRIKPRHLESMERGLELPLSLMLKSTDEEFEQLL 294

[Close]

BLAST of Chy12G209570.1 vs. TAIR 10
Match: AT2G03050.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 219.9 bits (559), Expect = 2.7e-57
Identity = 116/242 (47.93%), Postives = 166/242 (68.60%), Query Frame = 0


Query: 61  KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL 120
           +EK++ L+ + VD  KAL  NPSL S  + S+ SV + L S G+ +    +I  M P +L
Sbjct: 33  REKLIYLQDLNVDPHKALRVNPSLRSAPISSVVSVETLLSSTGLSRPAVGRILDMFPDLL 92

Query: 121 TSDVKTDLIPVFDFLSEDLKIPDQNFRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDL 180
           TSD +++++PV  FLS ++ I +Q+  K+I++CPRLL SS + QL+PAL +L+ LG    
Sbjct: 93  TSDPESEILPVLRFLSNEISISEQDIPKSISRCPRLLISSVDYQLRPALTFLKTLGFVGR 152

Query: 181 EALAYHDSVLLVSSVEKTLIPKLKYL-ESLGFTRSETVGMVLRCPALLTFSIENNFKPKF 240
           + +   ++VLLVS+VE+TLIPK++YL E LGFTR E   MV+R PALLT+S++NN  PK 
Sbjct: 153 DTITSRNTVLLVSNVERTLIPKIEYLEEGLGFTREEVAKMVVRSPALLTYSVDNNLVPKV 212

Query: 241 EYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKTTDVEFRELL 300
           E+F  EM   ++ELK FPQYF+FSLE++IKPR+    E G  +PLS MLK +D +F   L
Sbjct: 213 EFFIEEMRGDVKELKRFPQYFSFSLERKIKPRHRLLKEHGILMPLSEMLKVSDGQFNHWL 272

Query: 301 AE 302
            E
Sbjct: 273 LE 274

[Close]

BLAST of Chy12G209570.1 vs. TAIR 10
Match: AT2G36000.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-46
Identity = 112/309 (36.25%), Postives = 177/309 (57.28%), Query Frame = 0


Query: 3   SSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT-- 62
           SSS  + H +F   S  + ++ P+ S +PNTS S    +   K P    L ST ++ T  
Sbjct: 10  SSSLPSLHHNFPSLSRLRFNNFPALSFKPNTSSS---SSSFFKSPDIPSLSSTTTTTTTT 69

Query: 63  -------KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIH--QKDFAK 122
                   EK++ L+ +G+D    ++++P L S  L ++ SV+ ++ +  I+   +DF +
Sbjct: 70  ETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRR 129

Query: 123 IFGMCPKILTSDVKTDLIPVFDFLSEDLKIPD-QNFRKAINKCPRLLASSAEDQLKPALF 182
           +  MCP++LTS + +  IPV  FL  ++ +    + R+A+ + PRLLA S + QL+P L+
Sbjct: 130 LVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLY 189

Query: 183 YLQRLGLKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFS 242
           +LQR+G+ D     Y    LL  SV+  L+P++ Y E LGF+R     M  R P L  +S
Sbjct: 190 FLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYS 249

Query: 243 IENNFKPKFEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKT 300
           I  N++PK +Y  +EM R + E+ +FPQYF+FSLE RIKPR+      G + PL +MLKT
Sbjct: 250 IAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKT 309

[Close]

BLAST of Chy12G209570.1 vs. TAIR 10
Match: AT2G36000.2 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 183.0 bits (463), Expect = 3.7e-46
Identity = 112/309 (36.25%), Postives = 177/309 (57.28%), Query Frame = 0


Query: 3   SSSATAFHSSFCFSSHNKLSSSPSNSHQPNTSLSPKPKTLLHKHPLYTPLHSTVSSQT-- 62
           SSS  + H +F   S  + ++ P+ S +PNTS S    +   K P    L ST ++ T  
Sbjct: 10  SSSLPSLHHNFPSLSRLRFNNFPALSFKPNTSSS---SSSFFKSPDIPSLSSTTTTTTTT 69

Query: 63  -------KEKILCLEIMGVDSGKALSQNPSLHSVTLESIHSVISFLQSRGIH--QKDFAK 122
                   EK++ L+ +G+D    ++++P L S  L ++ SV+ ++ +  I+   +DF +
Sbjct: 70  ETLESSIHEKLIYLDSLGIDFLTLINRHPPLLSTALSAVESVVDYMTTPPINFTLQDFRR 129

Query: 123 IFGMCPKILTSDVKTDLIPVFDFLSEDLKIPD-QNFRKAINKCPRLLASSAEDQLKPALF 182
           +  MCP++LTS + +  IPV  FL  ++ +    + R+A+ + PRLLA S + QL+P L+
Sbjct: 130 LVSMCPELLTSPLTSHTIPVITFLLREVGVDSIFDLRQALRRRPRLLACSVDHQLRPTLY 189

Query: 183 YLQRLGLKDLEALAYHDSVLLVSSVEKTLIPKLKYLESLGFTRSETVGMVLRCPALLTFS 242
           +LQR+G+ D     Y    LL  SV+  L+P++ Y E LGF+R     M  R P L  +S
Sbjct: 190 FLQRIGILDPHKHTY----LLSCSVDNKLVPRIDYFEKLGFSRRSATAMFKRFPQLFNYS 249

Query: 243 IENNFKPKFEYFSMEMHRKLEELKDFPQYFAFSLEKRIKPRYVETVESGKKVPLSLMLKT 300
           I  N++PK +Y  +EM R + E+ +FPQYF+FSLE RIKPR+      G + PL +MLKT
Sbjct: 250 IAENYEPKLKYLMVEMGRDVREVLEFPQYFSFSLENRIKPRHEACAAKGVRFPLPVMLKT 309

[Close]

BLAST of Chy12G209570.1 vs. TAIR 10
Match: AT3G18870.1 (Mitochondrial transcription termination factor family protein )

HSP 1 Score: 154.1 bits (388), Expect = 1.8e-37
Identity = 100/270 (37.04%), Postives = 154/270 (57.04%), Query Frame = 0


Query: 30  QPNTSLSPKPKTLLHKHPLYTPLHSTVSSQTKEKILCLEIMGVDSGKALSQNPSL--HSV 89
           QP +S S  P     K     PL+    +  +E +  L  +G+     + QNP L   + 
Sbjct: 11  QPLSSFSSPPSPSSSK-----PLYLKFQTSHRENLRHLSSLGI-----VPQNPRLAPPAN 70

Query: 90  TLESIHSVISFLQSRGIHQKDFAKIFGMCPKIL--TSDVKTDLIPVFDFLSEDLKIPDQN 149
            L  I S ++ L+S+GI  +DF ++  +CP++   T D+ + L PVFDFL+ +L    + 
Sbjct: 71  DLSVILSAVNLLKSKGISDEDFPRLVFLCPQLFSPTFDI-SKLDPVFDFLTGELGASAEE 130

Query: 150 FRKAINKCPRLLASSAEDQLKPALFYLQRLGLKDLEALAYHDSVLLVSSVEKTLIPKLKY 209
            R  I  CP +L S  E  L+P L YL+ LG+++L   +  ++ +L + VEK L  K+++
Sbjct: 131 SRGLIVNCPNILFSDVEYCLRPTLVYLKELGVRNLNRASKTNAHVLNTRVEK-LRAKMRF 190

Query: 210 LESLGFTRSETVGMVLRCPALLTFSIENNFKPKFEYFSMEMHRKLEELKDFPQYFAFSLE 269
           L+S+GF   E   +  R PA+  +S+E+N +PKFE+   +M R+LEELK FPQYFAFSL 
Sbjct: 191 LKSIGFEHEEAARVCGRIPAIFGYSVEDNLRPKFEFLVYDMERELEELKKFPQYFAFSLG 250

Query: 270 KRIKPRYVETVESGKKVPLSLMLKTTDVEF 296
           KRI+PR+    +   +V LS ML   D +F
Sbjct: 251 KRIRPRHWHLKKKNVRVSLSRMLMWGDQKF 268

The following BLAST results are available for this feature:

BLAST of Chy12G209570.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q84X53	3.9e-56	47.93	Transcription termination factor MTEF1, chloroplastic OS=Arabidopsis thaliana OX...	[more]
F4JVI3	3.0e-24	30.96	Transcription termination factor MTERF5, chloroplastic OS=Arabidopsis thaliana O...	[more]
F4IHL3	2.0e-20	30.17	Transcription termination factor MTERF2, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q9ZT96	3.5e-17	25.27	Transcription termination factor MTERF4, chloroplastic OS=Arabidopsis thaliana O...	[more]
Q6AUK6	5.1e-16	26.76	Transcription termination factor MTERF4, chloroplastic OS=Oryza sativa subsp. ja...	[more]

BLAST of Chy12G209570.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LVD4	3.2e-162	98.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G535790 PE=3 SV=1	[more]
A0A5D3DB89	7.1e-162	98.03	Transcription termination factor MTEF1 OS=Cucumis melo var. makuwa OX=1194695 GN...	[more]
A0A1S3BBS5	7.1e-162	98.03	transcription termination factor MTEF1, chloroplastic OS=Cucumis melo OX=3656 GN...	[more]
A0A6J1CE81	3.2e-146	89.29	transcription termination factor MTEF1, chloroplastic OS=Momordica charantia OX=...	[more]
A0A6J1EFX2	1.1e-138	86.96	transcription termination factor MTEF1, chloroplastic-like OS=Cucurbita moschata...	[more]

BLAST of Chy12G209570.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004154376.1	1.23e-206	98.03	transcription termination factor MTEF1, chloroplastic [Cucumis sativus] >KGN6587...	[more]
XP_008444692.1	3.54e-206	98.03	PREDICTED: transcription termination factor MTEF1, chloroplastic [Cucumis melo] ...	[more]
XP_038895185.1	4.65e-188	91.12	transcription termination factor MTEF1, chloroplastic [Benincasa hispida]	[more]
XP_022139889.1	1.59e-185	90.43	transcription termination factor MTEF1, chloroplastic [Momordica charantia]	[more]
XP_022927002.1	6.40e-176	86.96	transcription termination factor MTEF1, chloroplastic-like [Cucurbita moschata] ...	[more]

BLAST of Chy12G209570.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G34620.1	1.4e-101	67.49	Mitochondrial transcription termination factor family protein	[more]
AT2G03050.1	2.7e-57	47.93	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.1	3.7e-46	36.25	Mitochondrial transcription termination factor family protein	[more]
AT2G36000.2	3.7e-46	36.25	Mitochondrial transcription termination factor family protein	[more]
AT3G18870.1	1.8e-37	37.04	Mitochondrial transcription termination factor family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	SMART	SM00733	mt_12	coord: 217..249 e-value: 3.0E-4 score: 30.1 coord: 181..212 e-value: 0.3 score: 20.1 coord: 147..178 e-value: 3.3E-4 score: 30.0 coord: 110..142 e-value: 0.0053 score: 26.0 coord: 75..105 e-value: 12.0 score: 14.8 coord: 250..283 e-value: 0.77 score: 18.8
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PFAM	PF02536	mTERF	coord: 190..295 e-value: 4.2E-27 score: 94.9 coord: 54..179 e-value: 2.7E-11 score: 43.0
IPR003690	Transcription termination factor, mitochondrial/chloroplastic	PANTHER	PTHR13068	CGI-12 PROTEIN-RELATED	coord: 11..301
IPR038538	MTERF superfamily, mitochondrial/chloroplastic	GENE3D	1.25.70.10	Transcription termination factor 3, mitochondrial	coord: 159..301 e-value: 1.8E-26 score: 94.8
None	No IPR available	PANTHER	PTHR13068:SF78	MITOCHONDRIAL TRANSCRIPTION TERMINATION FACTOR FAMILY PROTEIN	coord: 11..301

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy12G209570	Chy12G209570	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G209570.1.exon1	Chy12G209570.1.exon1	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy12G209570.1.cds1	Chy12G209570.1.cds1	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy12G209570.1	Chy12G209570.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006355	regulation of transcription, DNA-templated
biological_process	GO:0071472	cellular response to salt stress
biological_process	GO:0009658	chloroplast organization
biological_process	GO:0032502	developmental process
biological_process	GO:0006353	DNA-templated transcription, termination
cellular_component	GO:0009507	chloroplast
cellular_component	GO:0042646	plastid nucleoid
molecular_function	GO:0003690	double-stranded DNA binding
molecular_function	GO:0003729	mRNA binding