Chy11G201390.1 (mRNA) Cucumber (hystrix) v1

Overview
NameChy11G201390.1
TypemRNA
OrganismCucumis hystrix (Cucumber (hystrix) v1)
Description60S ribosomal protein L29
LocationchrH11: 22137603 .. 22137879 (+)
Sequence length186
RNA-Seq ExpressionChy11G201390.1
SyntenyChy11G201390.1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCCTACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACATCCACCAAAGGGGTTTGTGATTTTCTCATACAATCACTTCTGTTCTTATTGAATCCATTGTTTTCATTTTAGTTTGTTTTAATTCTCGTCGATTTTTTCGCAGATGGATCCGAAATTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATAACAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTAA

mRNA sequence

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCCTACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACATCCACCAAAGGGATGGATCCGAAATTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATAACAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTAA

Coding sequence (CDS)

ATGGCGAAGTCGAAGAATCACACAGCTCACAATCAATCCTACAAAGCCCATAAGAACGGCATCAAGAAACCAAGGAAGCACCGCCACACATCCACCAAAGGGATGGATCCGAAATTCCTTAGGAACCAGAGGTACGCGAAGAAACACAATAACAAGAGTGGGGAAAATGCTTCTGGGGAAGAGTAA

Protein sequence

MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGEE*
Homology
BLAST of Chy11G201390.1 vs. ExPASy Swiss-Prot
Match: Q9M7X7 (60S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.3e-22
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy Swiss-Prot
Match: Q84WM0 (60S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2)

HSP 1 Score: 104.8 bits (260), Expect = 3.7e-22
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy Swiss-Prot
Match: Q58DW3 (60S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-14
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

BLAST of Chy11G201390.1 vs. ExPASy Swiss-Prot
Match: P47914 (60S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-14
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

BLAST of Chy11G201390.1 vs. ExPASy Swiss-Prot
Match: Q8HXB8 (60S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3)

HSP 1 Score: 77.8 bits (190), Expect = 4.8e-14
Identity = 39/52 (75.00%), Postives = 43/52 (82.69%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNK 53
          MAKSKNHT HNQS K H+NGIKKPR  R+ S KG+DPKFLRN R+AKKHN K
Sbjct: 1  MAKSKNHTTHNQSRKWHRNGIKKPRSQRYESLKGVDPKFLRNMRFAKKHNKK 52

BLAST of Chy11G201390.1 vs. ExPASy TrEMBL
Match: A0A1S3C7P2 (60S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 8.2e-25
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy TrEMBL
Match: A0A1S3C7U0 (60S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497797 PE=3 SV=1)

HSP 1 Score: 119.8 bits (299), Expect = 4.1e-24
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy TrEMBL
Match: A0A0A0KCX6 (60S ribosomal protein L29 OS=Cucumis sativus OX=3659 GN=Csa_6G309950 PE=3 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 1.6e-23
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy TrEMBL
Match: V9HZW1 (60S ribosomal protein L29 OS=Ipomoea batatas OX=4120 GN=RPL29 PE=2 SV=1)

HSP 1 Score: 116.3 bits (290), Expect = 4.5e-23
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNNKSGE  SGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGEAGSGE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. ExPASy TrEMBL
Match: A0A2R6PJK9 (60S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc27140 PE=3 SV=1)

HSP 1 Score: 114.8 bits (286), Expect = 1.3e-22
Identity = 57/61 (93.44%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNNKSGE+A+ E
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGESATEE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. NCBI nr
Match: XP_008458371.1 (PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo])

HSP 1 Score: 122 bits (305), Expect = 8.94e-35
Identity = 61/61 (100.00%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60

BLAST of Chy11G201390.1 vs. NCBI nr
Match: XP_008458370.1 (PREDICTED: 60S ribosomal protein L29-1 [Cucumis melo])

HSP 1 Score: 119 bits (299), Expect = 7.37e-34
Identity = 60/61 (98.36%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

BLAST of Chy11G201390.1 vs. NCBI nr
Match: XP_011657268.1 (60S ribosomal protein L29-1 [Cucumis sativus] >XP_031743224.1 60S ribosomal protein L29-1 [Cucumis sativus])

HSP 1 Score: 117 bits (294), Expect = 4.27e-33
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHN KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNTKSGENASGE 60

BLAST of Chy11G201390.1 vs. NCBI nr
Match: ADV02780.1 (putative 60S ribosomal protein L29 [Ipomoea batatas])

HSP 1 Score: 116 bits (290), Expect = 1.74e-32
Identity = 58/61 (95.08%), Postives = 59/61 (96.72%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYA+KHNNKSGE  SGE
Sbjct: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYARKHNNKSGEAGSGE 60

BLAST of Chy11G201390.1 vs. NCBI nr
Match: XP_010534701.1 (PREDICTED: 60S ribosomal protein L29-1 [Tarenaya hassleriana])

HSP 1 Score: 115 bits (289), Expect = 2.48e-32
Identity = 57/61 (93.44%), Postives = 61/61 (100.00%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS+KAHKNGIKKPR+HRHTSTKGMDPKFLRNQRYA+KHN+KSGENASGE
Sbjct: 1  MAKSKNHTAHNQSHKAHKNGIKKPRRHRHTSTKGMDPKFLRNQRYARKHNSKSGENASGE 60

BLAST of Chy11G201390.1 vs. TAIR 10
Match: AT3G06700.1 (Ribosomal L29e protein family )

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-24
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. TAIR 10
Match: AT3G06700.2 (Ribosomal L29e protein family )

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-24
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. TAIR 10
Match: AT3G06700.3 (Ribosomal L29e protein family )

HSP 1 Score: 106.3 bits (264), Expect = 9.0e-24
Identity = 53/61 (86.89%), Postives = 57/61 (93.44%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN K+GENAS E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKAGENASAE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

BLAST of Chy11G201390.1 vs. TAIR 10
Match: AT3G06680.1 (Ribosomal L29e protein family )

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E
Sbjct: 23 MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 82

Query: 61 E 62
          E
Sbjct: 83 E 83

BLAST of Chy11G201390.1 vs. TAIR 10
Match: AT3G06680.2 (Ribosomal L29e protein family )

HSP 1 Score: 104.8 bits (260), Expect = 2.6e-23
Identity = 53/61 (86.89%), Postives = 56/61 (91.80%), Query Frame = 0

Query: 1  MAKSKNHTAHNQSYKAHKNGIKKPRKHRHTSTKGMDPKFLRNQRYAKKHNNKSGENASGE 60
          MAKSKNHTAHNQS KAHKNGIKKPR+HRHT T+GMDPKFLRNQRYA+KHN KSGENA  E
Sbjct: 1  MAKSKNHTAHNQSAKAHKNGIKKPRRHRHTPTRGMDPKFLRNQRYARKHNVKSGENAGVE 60

Query: 61 E 62
          E
Sbjct: 61 E 61

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
Q9M7X71.3e-2286.8960S ribosomal protein L29-1 OS=Arabidopsis thaliana OX=3702 GN=RPL29A PE=1 SV=1[more]
Q84WM03.7e-2286.8960S ribosomal protein L29-2 OS=Arabidopsis thaliana OX=3702 GN=RPL29B PE=3 SV=2[more]
Q58DW34.8e-1475.0060S ribosomal protein L29 OS=Bos taurus OX=9913 GN=RPL29 PE=2 SV=3[more]
P479144.8e-1475.0060S ribosomal protein L29 OS=Homo sapiens OX=9606 GN=RPL29 PE=1 SV=2[more]
Q8HXB84.8e-1475.0060S ribosomal protein L29 OS=Macaca fascicularis OX=9541 GN=RPL29 PE=2 SV=3[more]
Match NameE-valueIdentityDescription
A0A1S3C7P28.2e-25100.0060S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497798 PE=3 SV=1[more]
A0A1S3C7U04.1e-2498.3660S ribosomal protein L29 OS=Cucumis melo OX=3656 GN=LOC103497797 PE=3 SV=1[more]
A0A0A0KCX61.6e-2396.7260S ribosomal protein L29 OS=Cucumis sativus OX=3659 GN=Csa_6G309950 PE=3 SV=1[more]
V9HZW14.5e-2395.0860S ribosomal protein L29 OS=Ipomoea batatas OX=4120 GN=RPL29 PE=2 SV=1[more]
A0A2R6PJK91.3e-2293.4460S ribosomal protein L29 OS=Actinidia chinensis var. chinensis OX=1590841 GN=CE... [more]
Match NameE-valueIdentityDescription
XP_008458371.18.94e-35100.00PREDICTED: 60S ribosomal protein L29-1-like [Cucumis melo][more]
XP_008458370.17.37e-3498.36PREDICTED: 60S ribosomal protein L29-1 [Cucumis melo][more]
XP_011657268.14.27e-3396.7260S ribosomal protein L29-1 [Cucumis sativus] >XP_031743224.1 60S ribosomal prot... [more]
ADV02780.11.74e-3295.08putative 60S ribosomal protein L29 [Ipomoea batatas][more]
XP_010534701.12.48e-3293.44PREDICTED: 60S ribosomal protein L29-1 [Tarenaya hassleriana][more]
Match NameE-valueIdentityDescription
AT3G06700.19.0e-2486.89Ribosomal L29e protein family [more]
AT3G06700.29.0e-2486.89Ribosomal L29e protein family [more]
AT3G06700.39.0e-2486.89Ribosomal L29e protein family [more]
AT3G06680.12.6e-2386.89Ribosomal L29e protein family [more]
AT3G06680.22.6e-2386.89Ribosomal L29e protein family [more]
InterPro
Analysis Name: InterPro Annotations of Cucumber (hystrix) v1
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002673Ribosomal protein L29ePFAMPF01779Ribosomal_L29ecoord: 3..42
e-value: 5.6E-23
score: 81.0
IPR002673Ribosomal protein L29ePANTHERPTHR1288460S RIBOSOMAL PROTEIN L29coord: 1..61
NoneNo IPR availableGENE3D6.10.140.1730coord: 1..61
e-value: 6.5E-30
score: 105.2
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 40..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..61
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..32
NoneNo IPR availablePANTHERPTHR12884:SF3060S RIBOSOMAL PROTEIN L29coord: 1..61

Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameType
Chy11G201390Chy11G201390gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G201390.1.exon1Chy11G201390.1.exon1exon
Chy11G201390.1.exon2Chy11G201390.1.exon2exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameType
Chy11G201390.1.cds1Chy11G201390.1.cds1CDS
Chy11G201390.1.cds2Chy11G201390.1.cds2CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameType
Chy11G201390.1Chy11G201390.1-proteinpolypeptide


GO Annotation
GO Assignments
This mRNA is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006412 translation
biological_process GO:0002181 cytoplasmic translation
cellular_component GO:0005840 ribosome
cellular_component GO:0022625 cytosolic large ribosomal subunit
molecular_function GO:0003735 structural constituent of ribosome
molecular_function GO:0046872 metal ion binding