Chy11G187320.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy11G187320.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Unknown protein
Location	chrH11: 1528634 .. 1529652 (+)
Sequence length	507
RNA-Seq Expression	Chy11G187320.1
Synteny	Chy11G187320.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCCTACAACGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTAAGTAATTTTCGGTTTATTAGTTTTGTTCTTCATATATGTTTCTTCAATAATGGTAACTGATATATATCATTGGTTTTTATAAGGTCAAGAAAATCCATTTTACAAGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGAATGTTGGCGATGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGATTTTCGATGTGTTGTACAAGACATGGAAGATTCTGATTATGGTAAATATATTCTCTTCCTTTAATTTCTTGAAAGAAAGAAAGTCTTTCTTCTTTTGGTATTTATATAGTTTTTTGCAAGTTTTCTAAGGATTTCTTTTAATGTTTGTTAATTTGTGTGGCAGTTCCTATTACTATTAGGAGTTCACAAATCAACTTCGTCGTTGATCATGATTGGGAAACTAGTTTTACCGCCCAGGTATTCTTTAGGTTAAAATATATTTTTCAAATTAATAGTTTAAATGCCTTGATATACATAACATCAAATTTTTCAAGATTAATATTTACGGTTTATTGAGACTATAGAGACTAAAATGATGTTTTAACCAAATTCAAGATGGAATGTTAAGAATATATCTACTTAGTGGAGATGTTCGAAGACCCAAAACTCATAAAAAAGAAAATGATATTTTAACATTTATTTAATCTTCATGTATAGATTGATGCATGTTAAAAAACAATGGTGTGTGAACAAATTCATTTGCATGGCATTGTTTTTGTAGGAAGGAGAATGCATAATTGGAGGTATTGAAGAAGGAGATGAAATTAAATGTGGAATTAGATTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGCGTCTATACTCATATTTCTTCATTTTTTCCCCAAGACATATCTAATGGAGGAAATACGTTAATCTGA

mRNA sequence

ATGCCTACAACGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTCAAGAAAATCCATTTTACAAGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGAATGTTGGCGATGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGATTTTCGATGTGTTGTACAAGACATGGAAGATTCTGATTATGTTCCTATTACTATTAGGAGTTCACAAATCAACTTCGTCGTTGATCATGATTGGGAAACTAGTTTTACCGCCCAGGAAGGAGAATGCATAATTGGAGGTATTGAAGAAGGAGATGAAATTAAATGTGGAATTAGATTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGCGTCTATACTCATATTTCTTCATTTTTTCCCCAAGACATATCTAATGGAGGAAATACGTTAATCTGA

Coding sequence (CDS)

ATGCCTACAACGCCTACAAATCAAAGTAGTATCACTCTTAAATATCGTATTCCTTGTCAAGAAAATCCATTTTACAAGAAAGTGCTACCAATGTCCATAGTTGAAGAACCTGCGAATGTTGGCGATGTTGACTATGGTTCTTTCTTTGTATCAATGGCTTTAGAGGATTTTCGATGTGTTGTACAAGACATGGAAGATTCTGATTATGTTCCTATTACTATTAGGAGTTCACAAATCAACTTCGTCGTTGATCATGATTGGGAAACTAGTTTTACCGCCCAGGAAGGAGAATGCATAATTGGAGGTATTGAAGAAGGAGATGAAATTAAATGTGGAATTAGATTTTATCCAATGGAATTTTACAAAGCTTTCACATCAAAAAGAGTTTGGTTTTTCAGTTCATGTGATACCAATGGTTTGCTTTTGATTGCTCCTATGGGCGTCTATACTCATATTTCTTCATTTTTTCCCCAAGACATATCTAATGGAGGAAATACGTTAATCTGA

Protein sequence

MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDISNGGNTLI*

Homology

[Close]

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL
Match: A0A0A0LMQ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1)

HSP 1 Score: 275.4 bits (703), Expect = 1.6e-70
Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 31  MSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS 90
           MSIVEE ANVGDVDYGSFFVSMAL+DFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS
Sbjct: 1   MSIVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS 60

Query: 91  FTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYT 150
           FTA+EGECIIGGIEEGDEI CGI FYPMEFYK FTSKRVWFFSSCDTNGLLLIAPMGVYT
Sbjct: 61  FTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYT 120

Query: 151 HISSFFPQDISNGGNTL 168
           HISSFFPQDIS GGNTL
Sbjct: 121 HISSFFPQDISIGGNTL 137

[Close]

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL
Match: A0A0A0LJU4 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1)

HSP 1 Score: 250.8 bits (639), Expect = 4.2e-63
Identity = 121/138 (87.68%), Postives = 127/138 (92.03%), Query Frame = 0


Query: 31  MSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQINFV--VDHDWE 90
           MSIVEEPA VGDVDYGSFFVSMALE+FRCVVQDME++DYV +TI SSQI FV  VDH WE
Sbjct: 1   MSIVEEPAEVGDVDYGSFFVSMALEEFRCVVQDMENADYVRVTITSSQIKFVAPVDH-WE 60

Query: 91  TSFTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGV 150
           TSFT QEG+CIIGGIEEG+EIKCGI  YPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGV
Sbjct: 61  TSFTTQEGKCIIGGIEEGEEIKCGISLYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGV 120

Query: 151 YTHISSFFPQDISNGGNT 167
           YTHISSFFPQDI NGGNT
Sbjct: 121 YTHISSFFPQDIPNGGNT 137

[Close]

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL
Match: A0A1S3C6G9 (uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=4 SV=1)

HSP 1 Score: 244.6 bits (623), Expect = 3.0e-61
Identity = 117/143 (81.82%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 20  QENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQI 79
           QE+PF KK LPMSIV EP +VGDVDYGSFFVSMALE+FRCVV DME++ YVP+TI SS+I
Sbjct: 185 QEDPFNKKELPMSIVAEPVDVGDVDYGSFFVSMALEEFRCVVNDMENAAYVPVTITSSRI 244

Query: 80  NFV--VDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDT 139
            FV  +DH WETSFT +EGECIIGGIEEG EIKCGI  YPM+FYKAFTSKRVWFFSSCDT
Sbjct: 245 KFVALIDH-WETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVWFFSSCDT 304

Query: 140 NGLLLIAPMGVYTHISSFFPQDI 161
           NGLLLIAPMGVYTHISSFFPQ+I
Sbjct: 305 NGLLLIAPMGVYTHISSFFPQEI 326

[Close]

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL
Match: A0A5D3BK31 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold123G00530 PE=4 SV=1)

HSP 1 Score: 164.9 bits (416), Expect = 3.0e-37
Identity = 81/103 (78.64%), Postives = 90/103 (87.38%), Query Frame = 0


Query: 1   MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCV 60
           MPTTPTNQS ITLKYRIPCQE+PF KK LPMSIV EP +VGDVDYGSFFVSMALE+FRCV
Sbjct: 1   MPTTPTNQSCITLKYRIPCQEDPFNKKELPMSIVAEPVDVGDVDYGSFFVSMALEEFRCV 60

Query: 61  VQDMEDSDYVPITIRSSQINFV--VDHDWETSFTAQEGECIIG 102
           V DME++ YVP+TI SS+I FV  +DH WETSFT +EGECIIG
Sbjct: 61  VNDMENAAYVPVTITSSRIKFVALIDH-WETSFTTKEGECIIG 102

[Close]

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL
Match: A0A6J1EJ67 (uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC111434948 PE=4 SV=1)

HSP 1 Score: 124.0 bits (310), Expect = 5.9e-25
Identity = 66/153 (43.14%), Postives = 93/153 (60.78%), Query Frame = 0


Query: 7   NQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMED 66
           +Q    +++  P   +P   K++P S  E   N G +DY S FVS  L  FR +V  +E+
Sbjct: 97  HQRHFAMEFSPPSLVHP-RTKLIPTSPPERDINEGAIDYAS-FVSFDLFHFRRLVTGLEN 156

Query: 67  SDYVPITIRSSQINFVVDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTS 126
           +++  +TI +SQI F+V+ D E   T Q  ECIIGG   GDE +  +   P EF+  FTS
Sbjct: 157 NEHAYLTITNSQIKFLVE-DVEVVLTTQRKECIIGGFAAGDEFESAMCLCPWEFFYNFTS 216

Query: 127 KRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQD 160
           +R+W F S D  G+ LIAPMG+Y HISS+FP+D
Sbjct: 217 ERLWLFKSYDPKGMTLIAPMGLYVHISSYFPED 246

[Close]

BLAST of Chy11G187320.1 vs. NCBI nr
Match: KAE8651933.1 (hypothetical protein Csa_006731 [Cucumis sativus])

HSP 1 Score: 304 bits (779), Expect = 1.91e-103
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCV 60
           MPT PTNQSSITLKYRIPCQENPFY KVLPMSIVEEPA VGDVDYGSFFVSMALE+FRCV
Sbjct: 16  MPTMPTNQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCV 75

Query: 61  VQDMEDSDYVPITIRSSQINFV--VDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPM 120
           VQDME++DYV +TI SSQI FV  VDH WETSFT QEG+CIIGGIEEG+EIKCGI  YPM
Sbjct: 76  VQDMENADYVRVTITSSQIKFVAPVDH-WETSFTTQEGKCIIGGIEEGEEIKCGISLYPM 135

Query: 121 EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDISNGGNT 166
           EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDI NGGNT
Sbjct: 136 EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGGNT 182

[Close]

BLAST of Chy11G187320.1 vs. NCBI nr
Match: XP_031737287.1 (uncharacterized protein LOC116402216 [Cucumis sativus])

HSP 1 Score: 304 bits (779), Expect = 2.79e-102
Identity = 149/168 (88.69%), Postives = 155/168 (92.26%), Query Frame = 0


Query: 1   MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCV 60
           MPT PTNQSSITLKYRIPCQENPFY KVLPMSIVEEPA VGDVDYGSFFVSMALE+FRCV
Sbjct: 94  MPTMPTNQSSITLKYRIPCQENPFYTKVLPMSIVEEPAEVGDVDYGSFFVSMALEEFRCV 153

Query: 61  VQDMEDSDYVPITIRSSQINFV--VDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPM 120
           VQDME++DYV +TI SSQI FV  VDH WETSFT QEG+CIIGGIEEG+EIKCGI  YPM
Sbjct: 154 VQDMENADYVRVTITSSQIKFVAPVDH-WETSFTTQEGKCIIGGIEEGEEIKCGISLYPM 213

Query: 121 EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDISNGGNT 166
           EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDI NGGNT
Sbjct: 214 EFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYTHISSFFPQDIPNGGNT 260

[Close]

BLAST of Chy11G187320.1 vs. NCBI nr
Match: XP_031737417.1 (uncharacterized protein LOC116402255 [Cucumis sativus])

HSP 1 Score: 272 bits (696), Expect = 1.77e-91
Identity = 130/137 (94.89%), Postives = 132/137 (96.35%), Query Frame = 0


Query: 31  MSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS 90
           MSIVEE ANVGDVDYGSFFVSMAL+DFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS
Sbjct: 1   MSIVEEHANVGDVDYGSFFVSMALDDFRCVVQDMEDSDYVPITIRSSQINFVVDHDWETS 60

Query: 91  FTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDTNGLLLIAPMGVYT 150
           FTA+EGECIIGGIEEGDEI CGI FYPMEFYK FTSKRVWFFSSCDTNGLLLIAPMGVYT
Sbjct: 61  FTAKEGECIIGGIEEGDEINCGISFYPMEFYKGFTSKRVWFFSSCDTNGLLLIAPMGVYT 120

Query: 151 HISSFFPQDISNGGNTL 167
           HISSFFPQDIS GGNTL
Sbjct: 121 HISSFFPQDISIGGNTL 137

[Close]

BLAST of Chy11G187320.1 vs. NCBI nr
Match: XP_008457793.2 (PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo])

HSP 1 Score: 241 bits (616), Expect = 1.62e-76
Identity = 117/143 (81.82%), Postives = 128/143 (89.51%), Query Frame = 0


Query: 20  QENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCVVQDMEDSDYVPITIRSSQI 79
           QE+PF KK LPMSIV EP +VGDVDYGSFFVSMALE+FRCVV DME++ YVP+TI SS+I
Sbjct: 185 QEDPFNKKELPMSIVAEPVDVGDVDYGSFFVSMALEEFRCVVNDMENAAYVPVTITSSRI 244

Query: 80  NFV--VDHDWETSFTAQEGECIIGGIEEGDEIKCGIRFYPMEFYKAFTSKRVWFFSSCDT 139
            FV  +DH WETSFT +EGECIIGGIEEG EIKCGI  YPM+FYKAFTSKRVWFFSSCDT
Sbjct: 245 KFVALIDH-WETSFTTKEGECIIGGIEEGQEIKCGISLYPMKFYKAFTSKRVWFFSSCDT 304

Query: 140 NGLLLIAPMGVYTHISSFFPQDI 160
           NGLLLIAPMGVYTHISSFFPQ+I
Sbjct: 305 NGLLLIAPMGVYTHISSFFPQEI 326

[Close]

BLAST of Chy11G187320.1 vs. NCBI nr
Match: KAE8651932.1 (hypothetical protein Csa_006590, partial [Cucumis sativus])

HSP 1 Score: 189 bits (479), Expect = 6.50e-59
Identity = 91/94 (96.81%), Postives = 93/94 (98.94%), Query Frame = 0


Query: 1   MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEPANVGDVDYGSFFVSMALEDFRCV 60
           MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEE ANVGDVDYGSFFVSMAL+DFRCV
Sbjct: 10  MPTTPTNQSSITLKYRIPCQENPFYKKVLPMSIVEEHANVGDVDYGSFFVSMALDDFRCV 69

Query: 61  VQDMEDSDYVPITIRSSQINFVVDHDWETSFTAQ 94
           VQDMEDSDYVPITIRSSQINFVVDHDWETSFTA+
Sbjct: 70  VQDMEDSDYVPITIRSSQINFVVDHDWETSFTAK 103

The following BLAST results are available for this feature:

BLAST of Chy11G187320.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy11G187320.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LMQ7	1.6e-70	94.89	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287140 PE=4 SV=1	[more]
A0A0A0LJU4	4.2e-63	87.68	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G287150 PE=4 SV=1	[more]
A0A1S3C6G9	3.0e-61	81.82	uncharacterized protein LOC103497397 OS=Cucumis melo OX=3656 GN=LOC103497397 PE=...	[more]
A0A5D3BK31	3.0e-37	78.64	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A6J1EJ67	5.9e-25	43.14	uncharacterized protein LOC111434948 OS=Cucurbita moschata OX=3662 GN=LOC1114349...	[more]

BLAST of Chy11G187320.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8651933.1	1.91e-103	88.69	hypothetical protein Csa_006731 [Cucumis sativus]	[more]
XP_031737287.1	2.79e-102	88.69	uncharacterized protein LOC116402216 [Cucumis sativus]	[more]
XP_031737417.1	1.77e-91	94.89	uncharacterized protein LOC116402255 [Cucumis sativus]	[more]
XP_008457793.2	1.62e-76	81.82	PREDICTED: uncharacterized protein LOC103497397 [Cucumis melo]	[more]
KAE8651932.1	6.50e-59	96.81	hypothetical protein Csa_006590, partial [Cucumis sativus]	[more]

BLAST of Chy11G187320.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy11G187320	Chy11G187320	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy11G187320.1.exon1	Chy11G187320.1.exon1	exon
Chy11G187320.1.exon2	Chy11G187320.1.exon2	exon
Chy11G187320.1.exon3	Chy11G187320.1.exon3	exon
Chy11G187320.1.exon4	Chy11G187320.1.exon4	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy11G187320.1.cds1	Chy11G187320.1.cds1	CDS
Chy11G187320.1.cds2	Chy11G187320.1.cds2	CDS
Chy11G187320.1.cds3	Chy11G187320.1.cds3	CDS
Chy11G187320.1.cds4	Chy11G187320.1.cds4	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy11G187320.1	Chy11G187320.1-protein	polypeptide