Chy10G173450.1 (mRNA) Cucumber (hystrix) v1

Overview


Name	Chy10G173450.1
Type	mRNA
Organism	Cucumis hystrix (Cucumber (hystrix) v1)
Description	Transposase
Location	chrH10: 3974679 .. 3975653 (+)
Sequence length	293
RNA-Seq Expression	Chy10G173450.1
Synteny	Chy10G173450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTTCAAACTGTAGGCCTTTCGTTTTGTCAGTTTAAGAGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCGACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCTAGATTGTGTGTTACTTTCTCACTAACAATATATTTGAAAATAGGAAAAAAGACAATTGCAACAAGATAGACGATCTAAGAACAAGTACAACCATAGGATTTCAAGGAAGGGTTATGCCAATCTTATTGAGTTGGTAATAAGTAATTTATGTTCTCATAATTATTAAGTTTATCAAACTTTATCAAAGGTTATACTAATCTTATTATGGAATTGGAATGTAGAAAATGGAAGGTTCAAATGAAGTGGATTTCGATCGAGCCATCATGTGGAAGAAAGCTCGAGTTAACAAAAAAGGGGAGTATGACAACGACGATGTTCAGCAAGTCGTCCATAAAATAGTAAGACTTTTTGTAGATTACACATTTGAACTAACCATACATAAGCATTTCTATAACTTAGATTGGTTTTGTTATCGTTTTAGGATGAGATTTCAATGAATACAAATTCATCGTCCCAAAAAGGACACTCTTCTAATGATGTCTTAACTCAAGCATTGGGTACAAAAGAGCATCATGGTCGTGTTCGTGGGGTCAGTGGGTATGTTACTCCTACCACTTACTTTCATTGTGTAAAAAAAAAAATCAAAACGCGAGGAGGAGATTATACTTGAGAATAAAGAACTTTGAAGGCGTGTAAGCGAATTAGAAGCACATATCCACTCAAACTTGTCTACACCATTATCTGGACATGGTAGTTGTTCGAAGCCAAATATCTTAGAAGAGAGTGAGTCGATGAAAATAATCAAAAGGAAGAGTAAGTTGATAGATAAAATCAAAGGGAAAG

mRNA sequence

GCCGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTTCAAACTGTAGGCCTTTCGTTTTGTCAGTTTAAGAGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCGACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCTAGATTGTGTGAAAAAAGACAATTGCAACAAGATAGACGATCTAAGAACAAGTACAACCATAGGATTTCAAGGAAGGGTTATGCCAATCTTATTGAGGAAAG

Coding sequence (CDS)

GCCGCATTCGTCATTGATCCAAGATCTAGGAAAAATATTCTTCAAACTGTAGGCCTTTCGTTTTGTCAGTTTAAGAGTTGGCTAACAACGAAATACATTATGCCACATAAGGATGAACCGCGACTCCTACAAGTTCCACCAGAAAAGTATTCATTTATTGATCAACATCATTGGGAAGAATTTGTAAGGTCTAGATTGTGTGAAAAAAGACAATTGCAACAAGATAGACGATCTAAGAACAAGTACAACCATAGGATTTCAAGGAAGGGTTATGCCAATCTTATTGAGGAAAG

Protein sequence

AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEEFVRSRLCEKRQLQQDRRSKNKYNHRISRKGYANLIEEX

Homology

[Close]

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL
Match: A0A5A7UZZ5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold430G00850 PE=4 SV=1)

HSP 1 Score: 178.3 bits (451), Expect = 1.5e-41
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+SFCQFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 223 AAFVIDPRSRKNVLQTAGISFCQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 282

Query: 61  FVRSRLC----EKRQLQQDRRSKNKYNHRISRKGYANLIEE 98
           FVRSRL     EKR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 283 FVRSRLLETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 323

[Close]

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL
Match: A0A5A7TZ25 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00030 PE=4 SV=1)

HSP 1 Score: 174.1 bits (440), Expect = 2.9e-40
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+ FCQFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 20  AAFVIDPRSRKNVLQTAGIPFCQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 79

Query: 61  FVRSRLC----EKRQLQQDRRSKNKYNHRISRKGYANLIEE 98
           FVR RL     EKR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 80  FVRLRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 120

[Close]

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL
Match: A0A5D3DME5 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G00220 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+SF QFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 100 AAFVIDPRSRKNVLQTAGISFRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

Query: 61  FVRSRLC----EKRQLQQDRRSKNKYNHRISRKGYANLIEE 98
           FVRSRL     EKR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 160 FVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 200

[Close]

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL
Match: A0A5D3C8G6 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold120G001550 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+SF QFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 100 AAFVIDPRSRKNVLQTAGISFRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

Query: 61  FVRSRLC----EKRQLQQDRRSKNKYNHRISRKGYANLIEE 98
           FVRSRL     EKR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 160 FVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 200

[Close]

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL
Match: A0A5D3C8G8 (Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1737G00550 PE=3 SV=1)

HSP 1 Score: 173.7 bits (439), Expect = 3.8e-40
Identity = 85/101 (84.16%), Postives = 93/101 (92.08%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+SF QFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 100 AAFVIDPRSRKNVLQTAGISFRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

Query: 61  FVRSRLC----EKRQLQQDRRSKNKYNHRISRKGYANLIEE 98
           FVRSRL     EKR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 160 FVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 200

[Close]

BLAST of Chy10G173450.1 vs. NCBI nr
Match: KAE8648270.1 (hypothetical protein Csa_017799, partial [Cucumis sativus])

HSP 1 Score: 175 bits (444), Expect = 8.18e-55
Identity = 86/101 (85.15%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKNI+QT G+SF QFK WLTTKYIMPHKDEP+LLQVPPEKYSFIDQHHW E
Sbjct: 1   AAFVIDPRSRKNIIQTAGISFRQFKCWLTTKYIMPHKDEPQLLQVPPEKYSFIDQHHWAE 60

Query: 61  FVRSRLCE----KRQLQQDRRSKNKYNHRISRKGYANLIEE 97
           FVRSRLCE    KR LQQDR+SKNKYNH+ISRKGY NLIEE
Sbjct: 61  FVRSRLCETFQEKRLLQQDRQSKNKYNHKISRKGYVNLIEE 101

[Close]

BLAST of Chy10G173450.1 vs. NCBI nr
Match: KAA0042315.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 169 bits (428), Expect = 6.00e-51
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+S  QFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 100 AAFVIDPRSRKNVLQTAGISVRQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 159

Query: 61  FVRSRLCE----KRQLQQDRRSKNKYNHRISRKGYANLIEE 97
           FVRSRL E    KR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 160 FVRSRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 200

[Close]

BLAST of Chy10G173450.1 vs. NCBI nr
Match: KAA0043643.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 171 bits (434), Expect = 2.22e-50
Identity = 87/101 (86.14%), Postives = 91/101 (90.10%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKNILQT  +SF QFK+WLTTKYIMPHKDEP+LLQV PEKYSFI Q+HWEE
Sbjct: 224 AAFVIDPRSRKNILQTADISFHQFKNWLTTKYIMPHKDEPQLLQVLPEKYSFIKQNHWEE 283

Query: 61  FVRSRLCE----KRQLQQDRRSKNKYNHRISRKGYANLIEE 97
           FVRSRLCE    KRQLQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 284 FVRSRLCETFQEKRQLQQDRRSKNKYNHRISRKGYANLKEE 324

[Close]

BLAST of Chy10G173450.1 vs. NCBI nr
Match: KAA0048294.1 (putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa])

HSP 1 Score: 172 bits (436), Expect = 3.45e-50
Identity = 84/101 (83.17%), Postives = 92/101 (91.09%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+ FCQFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 20  AAFVIDPRSRKNVLQTAGIPFCQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 79

Query: 61  FVRSRLCE----KRQLQQDRRSKNKYNHRISRKGYANLIEE 97
           FVR RL E    KR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 80  FVRLRLSETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 120

[Close]

BLAST of Chy10G173450.1 vs. NCBI nr
Match: KAA0059165.1 (uncharacterized protein E6C27_scaffold430G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 176 bits (447), Expect = 5.21e-50
Identity = 86/101 (85.15%), Postives = 94/101 (93.07%), Query Frame = 0


Query: 1   AAFVIDPRSRKNILQTVGLSFCQFKSWLTTKYIMPHKDEPRLLQVPPEKYSFIDQHHWEE 60
           AAFVIDPRSRKN+LQT G+SFCQFK+WLTTKYI+PHKDEP+LLQVPPEKYSFI+Q+HWEE
Sbjct: 223 AAFVIDPRSRKNVLQTAGISFCQFKNWLTTKYIIPHKDEPQLLQVPPEKYSFIEQNHWEE 282

Query: 61  FVRSRLCE----KRQLQQDRRSKNKYNHRISRKGYANLIEE 97
           FVRSRL E    KR+LQQDRRSKNKYNHRISRKGYANL EE
Sbjct: 283 FVRSRLLETFQEKRKLQQDRRSKNKYNHRISRKGYANLKEE 323

The following BLAST results are available for this feature:

BLAST of Chy10G173450.1 vs.


Match Name	E-value	Identity	Description

BLAST of Chy10G173450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UZZ5	1.5e-41	85.15	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TZ25	2.9e-40	83.17	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3DME5	3.8e-40	84.16	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C8G6	3.8e-40	84.16	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A5D3C8G8	3.8e-40	84.16	Putative serine/threonine-protein kinase nek2 OS=Cucumis melo var. makuwa OX=119...	[more]

BLAST of Chy10G173450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8648270.1	8.18e-55	85.15	hypothetical protein Csa_017799, partial [Cucumis sativus]	[more]
KAA0042315.1	6.00e-51	83.17	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0043643.1	2.22e-50	86.14	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0048294.1	3.45e-50	83.17	putative serine/threonine-protein kinase nek2 [Cucumis melo var. makuwa]	[more]
KAA0059165.1	5.21e-50	85.15	uncharacterized protein E6C27_scaffold430G00850 [Cucumis melo var. makuwa]	[more]

BLAST of Chy10G173450.1 vs. NCBI nr


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
Chy10G173450	Chy10G173450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G173450.1.exon1	Chy10G173450.1.exon1	exon
Chy10G173450.1.exon2	Chy10G173450.1.exon2	exon
Chy10G173450.1.exon3	Chy10G173450.1.exon3	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
Chy10G173450.1.cds1	Chy10G173450.1.cds1	CDS
Chy10G173450.1.cds2	Chy10G173450.1.cds2	CDS
Chy10G173450.1.cds3	Chy10G173450.1.cds3	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
Chy10G173450.1	Chy10G173450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016310	phosphorylation
biological_process	GO:0006508	proteolysis
molecular_function	GO:0008234	cysteine-type peptidase activity
molecular_function	GO:0016301	kinase activity