CcUC11G211560.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC11G211560.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	MYB transcription factor
Location	CicolChr11: 3550484 .. 3551460 (+)
Sequence length	684
RNA-Seq Expression	CcUC11G211560.1
Synteny	CcUC11G211560.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGGAGAGTAAAGCCATGAAGCAACAGCCGAAGAAAAATTTGTGGAAACCAGAGGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGAAATTGGGCAACTGTATCCCAGGAATCAGGTAAAAAATTTGACTCGAAAACTATCTCTAATAACTGATCTAAACGTGCAGTCTTTACTATATCGGCTACGATTCATATTTCCTGAAACTCTATAACACACAGTGAGATGAAGATGACGGCTTTTTTATAAAAATGTTACACATATATCAGGAACTATAGTTTTCATTTATGTCGCGTGTGAGCATTCCTCCCCCATTTCTTAGGTTTGATGCGAGGTGGGAAAAGCTGCAGGCTGAGATGGAAGAATTATCTCAGGCCTAATATAAAACGTGGGGGGATGTCTAAAGAGGAAGAGGATCTAATTATCCGTATGCATAAACTTTTAGGCAACAGGTGAGTTTGTATTGCATTAACCTCCATAAAGCTGAATCAATACTTACAGTAAAGAGAACGAACTTGCTGAATGTTTGGATATTTTTAAACTCTGTTATTTCTTCCATCAGATGGTCATTGATTGCTGGTCGGCTTCCTGGTCGAACAGATAACGAGGTGAAGAACTACTGGAATACCCATTTAAACAAGAATGGCCTGCAAGACAAAAGGAAAGCTAATGACTCCAACAGCTGCAAGAAAAATGATGATGACAACCAAAATGATGGGAATAATAAGAAGCAGAAGAAAGTTATCAATGACAATGACAATGGGGCAGATTTGGCTCATGATACACGGAGAAGGAATATGGATGATATACAAAGTTCTCATTATAATTTAAACTCTCCAATGGTACCTGGAAATAACGTGGCATTTAACTTTGACGACGAGCCTTACTTTGACCACCTTGATCCCTTCTTCCTATTTGAACCATTTGGATGCAGTAGTGTTGATGCATCACTGGATAACATGTAA

mRNA sequence

ATGGAGGAGAGTAAAGCCATGAAGCAACAGCCGAAGAAAAATTTGTGGAAACCAGAGGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGAAATTGGGCAACTGTATCCCAGGAATCAGCATTCCTCCCCCATTTCTTAGGTTTGATGCGAGGTGGGAAAAGCTGCAGGCTGAGATGGAAGAATTATCTCAGGCCTAATATAAAACGTGGGGGGATGTCTAAAGAGGAAGAGGATCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCATTGATTGCTGGTCGGCTTCCTGGTCGAACAGATAACGAGGTGAAGAACTACTGGAATACCCATTTAAACAAGAATGGCCTGCAAGACAAAAGGAAAGCTAATGACTCCAACAGCTGCAAGAAAAATGATGATGACAACCAAAATGATGGGAATAATAAGAAGCAGAAGAAAGTTATCAATGACAATGACAATGGGGCAGATTTGGCTCATGATACACGGAGAAGGAATATGGATGATATACAAAGTTCTCATTATAATTTAAACTCTCCAATGGTACCTGGAAATAACGTGGCATTTAACTTTGACGACGAGCCTTACTTTGACCACCTTGATCCCTTCTTCCTATTTGAACCATTTGGATGCAGTAGTGTTGATGCATCACTGGATAACATGTAA

Coding sequence (CDS)

ATGGAGGAGAGTAAAGCCATGAAGCAACAGCCGAAGAAAAATTTGTGGAAACCAGAGGAAGATTTGATCCTCAGAAACTATGTGGAAACTCATGGTGAAGGAAATTGGGCAACTGTATCCCAGGAATCAGCATTCCTCCCCCATTTCTTAGGTTTGATGCGAGGTGGGAAAAGCTGCAGGCTGAGATGGAAGAATTATCTCAGGCCTAATATAAAACGTGGGGGGATGTCTAAAGAGGAAGAGGATCTAATTATCCGTATGCATAAACTTTTAGGCAACAGATGGTCATTGATTGCTGGTCGGCTTCCTGGTCGAACAGATAACGAGGTGAAGAACTACTGGAATACCCATTTAAACAAGAATGGCCTGCAAGACAAAAGGAAAGCTAATGACTCCAACAGCTGCAAGAAAAATGATGATGACAACCAAAATGATGGGAATAATAAGAAGCAGAAGAAAGTTATCAATGACAATGACAATGGGGCAGATTTGGCTCATGATACACGGAGAAGGAATATGGATGATATACAAAGTTCTCATTATAATTTAAACTCTCCAATGGTACCTGGAAATAACGTGGCATTTAACTTTGACGACGAGCCTTACTTTGACCACCTTGATCCCTTCTTCCTATTTGAACCATTTGGATGCAGTAGTGTTGATGCATCACTGGATAACATGTAA

Protein sequence

MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVINDNDNGADLAHDTRRRNMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSSVDASLDNM

Homology

[Close]

BLAST of CcUC11G211560.1 vs. NCBI nr
Match: XP_008456991.1 (PREDICTED: transcription factor WER-like [Cucumis melo] >KAA0063534.1 transcription factor WER-like [Cucumis melo var. makuwa] >TYJ97861.1 transcription factor WER-like [Cucumis melo var. makuwa])

HSP 1 Score: 394.0 bits (1011), Expect = 8.5e-106
Identity = 202/248 (81.45%), Postives = 209/248 (84.27%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQPKKNLWKPEED ILR+YVETHGEGNWATVSQES       GLMRG KSCR
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQES-------GLMRGAKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRKAN+SNSCKKNDD+N +DGNNKKQKKVIN           DNGADLAHD +RR
Sbjct: 121 NGLQDKRKANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSPM+P NN  FNFDDEPYFDHLDPFFLFE FGCSS
Sbjct: 181 NQEENREKQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. NCBI nr
Match: XP_004139409.1 (transcription factor WER [Cucumis sativus])

HSP 1 Score: 392.1 bits (1006), Expect = 3.2e-105
Identity = 201/248 (81.05%), Postives = 209/248 (84.27%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQPKKNLWKPEEDLILR+YVETHGEGNWA VSQES       GLMRG KSCR
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDLILRSYVETHGEGNWAIVSQES-------GLMRGAKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRKAN+SNSCKKNDD+N +DGNNKKQKKVIN          +DNG DLAHD +RR
Sbjct: 121 NGLQDKRKANNSNSCKKNDDNNSDDGNNKKQKKVINQIYYPQPPICSDNGTDLAHDIQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSPM+P NN  FNFDDEPYFDHLDPFFLFE FGCSS
Sbjct: 181 NQEENREKQDPWNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. NCBI nr
Match: XP_038889962.1 (transcription repressor MYB5 [Benincasa hispida])

HSP 1 Score: 392.1 bits (1006), Expect = 3.2e-105
Identity = 205/248 (82.66%), Postives = 211/248 (85.08%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRKAN SNSCKKNDDDN +DGNNKKQKKVIN          +DNG +LAHDT+RR
Sbjct: 121 NGLQDKRKANASNSCKKNDDDNDDDGNNKKQKKVINQTGYPQPPICSDNGTNLAHDTQRR 180

Query: 181 N------------MDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
           N            +DDI SSHYN+NSPMV  NNVAFNFDDEPYFDHLDP FLFE FGCSS
Sbjct: 181 NQEENREVTDPWKIDDI-SSHYNINSPMVAANNVAFNFDDEPYFDHLDPLFLFEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. NCBI nr
Match: XP_022946431.1 (transcription factor MYB82 [Cucurbita moschata])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 198/248 (79.84%), Postives = 204/248 (82.26%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVINDN---------DNGADLAHDTRRR 180
           NGLQDKRKANDSNS KKNDDDN +D NNKKQKKVIN           DNG +LAHDT+RR
Sbjct: 121 NGLQDKRKANDSNSHKKNDDDNDDDVNNKKQKKVINQTGYPQPPICIDNGINLAHDTQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSP+VP N+  FNFDDEPYFDHLDPFFL E FGCSS
Sbjct: 181 NQEEKREVTEPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. NCBI nr
Match: XP_023545990.1 (transcription factor MYB82 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 377.1 bits (967), Expect = 1.1e-100
Identity = 198/248 (79.84%), Postives = 204/248 (82.26%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVINDN---------DNGADLAHDTRRR 180
           NGLQDKRKANDSNS KKNDDDN +D NNKKQKKVIN           DNG +LAHDT+RR
Sbjct: 121 NGLQDKRKANDSNSHKKNDDDNDDDVNNKKQKKVINQTCYPQPPICIDNGKNLAHDTQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSP+VP N+  FNFDDEPYFDHLDPFFL E FGCSS
Sbjct: 181 NQEENREVTDPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot
Match: Q9LTF7 (Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1)

HSP 1 Score: 191.0 bits (484), Expect = 1.4e-47
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ S       GL RGGKSCRLRWKNYL
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRS-------GLKRGGKSCRLRWKNYL 68

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 127
           RPNIKRG MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++
Sbjct: 69  RPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQ 126

Query: 128 KANDS 133
            A +S
Sbjct: 129 NAPES 126

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot
Match: Q96276 (Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1)

HSP 1 Score: 154.8 bits (390), Expect = 1.1e-36
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYLRPNI 71
           KK LW  EED IL +YV THG+G+W  +++++       GL R GKSCRLRW NYL PN+
Sbjct: 13  KKGLWTVEEDKILMDYVRTHGQGHWNRIAKKT-------GLKRCGKSCRLRWMNYLSPNV 72

Query: 72  KRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQDKRKA 130
            RG  + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D   A
Sbjct: 73  NRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDHSTA 124

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot
Match: A0A4D6Q4S0 (Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 SV=1)

HSP 1 Score: 154.5 bits (389), Expect = 1.5e-36
Identity = 71/113 (62.83%), Postives = 85/113 (75.22%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           K+   +  W   ED +L++Y+ THGEG W         LP   GL R GKSCRLRW NYL
Sbjct: 9   KEGLNRGAWSAREDKVLKDYINTHGEGKWRD-------LPRRAGLKRCGKSCRLRWLNYL 68

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 121
           RP+IKRG +S +EE+LIIR+HKLLGNRWSLIAGRLPGRTDNE+KNYWNT+L+K
Sbjct: 69  RPDIKRGNISYDEEELIIRLHKLLGNRWSLIAGRLPGRTDNEIKNYWNTYLSK 114

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot
Match: A0A4D6Q411 (Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB1 PE=2 SV=1)

HSP 1 Score: 151.0 bits (380), Expect = 1.6e-35
Identity = 71/113 (62.83%), Postives = 83/113 (73.45%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           K+   +  W   ED IL  Y++THGEG W +       LP   GL R GKSCRLRW NYL
Sbjct: 9   KEGMNRGAWASMEDKILVTYIKTHGEGKWRS-------LPKRAGLKRCGKSCRLRWLNYL 68

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 121
           RP IKRG +S++EEDLIIR+H LLGNRWSLIAGRLPGRTDNE+KNYWNT+L +
Sbjct: 69  RPGIKRGNISEDEEDLIIRLHNLLGNRWSLIAGRLPGRTDNEIKNYWNTNLGR 114

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot
Match: Q9FJA2 (Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 6.2e-35
Identity = 74/135 (54.81%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           +++  +  W   ED ILR+Y+ THGEG W+T       LP+  GL R GKSCRLRWKNYL
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWST-------LPNQAGLKRCGKSCRLRWKNYL 70

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 127
           RP IKRG +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K   + + 
Sbjct: 71  RPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQT 130

Query: 128 KANDSNSCKKNDDDN 143
           K         N+++N
Sbjct: 131 KQPKRIKHSTNNENN 138

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL
Match: A0A5D3BGT2 (Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold285G00730 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.1e-106
Identity = 202/248 (81.45%), Postives = 209/248 (84.27%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQPKKNLWKPEED ILR+YVETHGEGNWATVSQES       GLMRG KSCR
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQES-------GLMRGAKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRKAN+SNSCKKNDD+N +DGNNKKQKKVIN           DNGADLAHD +RR
Sbjct: 121 NGLQDKRKANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSPM+P NN  FNFDDEPYFDHLDPFFLFE FGCSS
Sbjct: 181 NQEENREKQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL
Match: A0A1S3C427 (transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1)

HSP 1 Score: 394.0 bits (1011), Expect = 4.1e-106
Identity = 202/248 (81.45%), Postives = 209/248 (84.27%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQPKKNLWKPEED ILR+YVETHGEGNWATVSQES       GLMRG KSCR
Sbjct: 1   MEESKAMKQQPKKNLWKPEEDFILRSYVETHGEGNWATVSQES-------GLMRGAKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRKAN+SNSCKKNDD+N +DGNNKKQKKVIN           DNGADLAHD +RR
Sbjct: 121 NGLQDKRKANNSNSCKKNDDNNSDDGNNKKQKKVINQTCYPQPPLYRDNGADLAHDIQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSPM+P NN  FNFDDEPYFDHLDPFFLFE FGCSS
Sbjct: 181 NQEENREKQNPSNMDDITSSHYNINSPMIPANNTTFNFDDEPYFDHLDPFFLFEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL
Match: A0A6J1G3P0 (transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV=1)

HSP 1 Score: 377.1 bits (967), Expect = 5.2e-101
Identity = 198/248 (79.84%), Postives = 204/248 (82.26%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVINDN---------DNGADLAHDTRRR 180
           NGLQDKRKANDSNS KKNDDDN +D NNKKQKKVIN           DNG +LAHDT+RR
Sbjct: 121 NGLQDKRKANDSNSHKKNDDDNDDDVNNKKQKKVINQTGYPQPPICIDNGINLAHDTQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSP+VP N+  FNFDDEPYFDHLDPFFL E FGCSS
Sbjct: 181 NQEEKREVTEPWNMDDITSSHYNINSPIVPANDATFNFDDEPYFDHLDPFFLLEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL
Match: A0A6J1FGK0 (transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4 SV=1)

HSP 1 Score: 369.4 bits (947), Expect = 1.1e-98
Identity = 193/248 (77.82%), Postives = 203/248 (81.85%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESKAMKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKAMKQQAKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVIND---------NDNGADLAHDTRRR 180
           NGLQDKRK N+S+SCKK D+D   DGNNKKQKKVIN          +DN A+ AHD +RR
Sbjct: 121 NGLQDKRKVNESSSCKKKDED---DGNNKKQKKVINQTSYPQPQMCSDNWANQAHDIQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+N PMVP NN  FNFDDEP+F+HLDPFFL E FGCSS
Sbjct: 181 NQEENREVTDLWNMDDITSSHYNINCPMVPANNATFNFDDEPHFNHLDPFFLIEAFGCSS 238

[Close]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL
Match: A0A6J1KGL3 (transcription factor MYB82 OS=Cucurbita maxima OX=3661 GN=LOC111493699 PE=4 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.4e-98
Identity = 195/248 (78.63%), Postives = 201/248 (81.05%), Query Frame = 0


Query: 1   MEESKAMKQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCR 60
           MEESK MKQQ KKNLWKPEEDLILRNYVETHGEGNWATVSQES       GLMRGGKSCR
Sbjct: 1   MEESKEMKQQLKKNLWKPEEDLILRNYVETHGEGNWATVSQES-------GLMRGGKSCR 60

Query: 61  LRWKNYLRPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120
           LRWKNYLRPNIKRG MSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK
Sbjct: 61  LRWKNYLRPNIKRGEMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 120

Query: 121 NGLQDKRKANDSNSCKKNDDDNQNDGNNKKQKKVINDN---------DNGADLAHDTRRR 180
           NGLQDKRKANDSNS  KNDDDN +D NNKKQKKVIN           DNG +LAHDT+RR
Sbjct: 121 NGLQDKRKANDSNSHMKNDDDNDDDVNNKKQKKVINQTCYPQPPICIDNGINLAHDTQRR 180

Query: 181 ------------NMDDIQSSHYNLNSPMVPGNNVAFNFDDEPYFDHLDPFFLFEPFGCSS 228
                       NMDDI SSHYN+NSP+V  N+  FNFDDEPYFDHLDP FL E FGCSS
Sbjct: 181 NQEENREVTEPWNMDDITSSHYNINSPIVHANDATFNFDDEPYFDHLDPLFLLEAFGCSS 240

[Close]

BLAST of CcUC11G211560.1 vs. TAIR 10
Match: AT5G52600.1 (myb domain protein 82 )

HSP 1 Score: 191.0 bits (484), Expect = 1.0e-48
Identity = 91/125 (72.80%), Postives = 102/125 (81.60%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           K   K+ LWKPEED+IL++YVETHGEGNWA +S+ S       GL RGGKSCRLRWKNYL
Sbjct: 9   KSYVKRGLWKPEEDMILKSYVETHGEGNWADISRRS-------GLKRGGKSCRLRWKNYL 68

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 127
           RPNIKRG MS +E+DLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK     ++
Sbjct: 69  RPNIKRGSMSPQEQDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKKPNSRRQ 126

Query: 128 KANDS 133
            A +S
Sbjct: 129 NAPES 126

[Close]

BLAST of CcUC11G211560.1 vs. TAIR 10
Match: AT5G40330.1 (myb domain protein 23 )

HSP 1 Score: 154.8 bits (390), Expect = 8.1e-38
Identity = 74/119 (62.18%), Postives = 89/119 (74.79%), Query Frame = 0


Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYLRPNI 71
           KK LW  EED IL +YV THG+G+W  +++++       GL R GKSCRLRW NYL PN+
Sbjct: 13  KKGLWTVEEDKILMDYVRTHGQGHWNRIAKKT-------GLKRCGKSCRLRWMNYLSPNV 72

Query: 72  KRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQDKRKA 130
            RG  + +EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  GL D   A
Sbjct: 73  NRGNFTDQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGLGDHSTA 124

[Close]

BLAST of CcUC11G211560.1 vs. TAIR 10
Match: AT5G35550.1 (Duplicated homeodomain-like superfamily protein )

HSP 1 Score: 149.1 bits (375), Expect = 4.4e-36
Identity = 74/135 (54.81%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           +++  +  W   ED ILR+Y+ THGEG W+T       LP+  GL R GKSCRLRWKNYL
Sbjct: 11  REELNRGAWTDHEDKILRDYITTHGEGKWST-------LPNQAGLKRCGKSCRLRWKNYL 70

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKNGLQDKR 127
           RP IKRG +S +EE+LIIR+H LLGNRWSLIAGRLPGRTDNE+KN+WN++L K   + + 
Sbjct: 71  RPGIKRGNISSDEEELIIRLHNLLGNRWSLIAGRLPGRTDNEIKNHWNSNLRKRLPKTQT 130

Query: 128 KANDSNSCKKNDDDN 143
           K         N+++N
Sbjct: 131 KQPKRIKHSTNNENN 138

[Close]

BLAST of CcUC11G211560.1 vs. TAIR 10
Match: AT5G14750.1 (myb domain protein 66 )

HSP 1 Score: 148.7 bits (374), Expect = 5.8e-36
Identity = 86/174 (49.43%), Postives = 111/174 (63.79%), Query Frame = 0


Query: 12  KKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYLRPNI 71
           KK LW  EED IL +YV+ HG+G+W  +++++       GL R GKSCRLRW NYL PN+
Sbjct: 17  KKGLWTVEEDKILMDYVKAHGKGHWNRIAKKT-------GLKRCGKSCRLRWMNYLSPNV 76

Query: 72  KRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNKN-GLQDKRKAN 131
           KRG  +++EEDLIIR+HKLLGNRWSLIA R+PGRTDN+VKNYWNTHL+K  G++D +K  
Sbjct: 77  KRGNFTEQEEDLIIRLHKLLGNRWSLIAKRVPGRTDNQVKNYWNTHLSKKLGIKD-QKTK 136

Query: 132 DSNSCKKNDDDNQNDGNNKKQKKVINDNDNGADLAHDTRRRNMDDIQSSHYNLN 185
            SN       +  N     ++ K+ N  DN   L         D+IQ  H   N
Sbjct: 137 QSNGDIVYQINLPNPTETSEETKISNIVDNNNILG--------DEIQEDHQGSN 174

[Close]

BLAST of CcUC11G211560.1 vs. TAIR 10
Match: AT1G22640.1 (myb domain protein 3 )

HSP 1 Score: 147.9 bits (372), Expect = 9.9e-36
Identity = 66/113 (58.41%), Postives = 82/113 (72.57%), Query Frame = 0


Query: 8   KQQPKKNLWKPEEDLILRNYVETHGEGNWATVSQESAFLPHFLGLMRGGKSCRLRWKNYL 67
           K    K  W  EED +L +Y+  HGEG W +       LP   GL R GKSCRLRW NYL
Sbjct: 9   KAHMNKGAWTKEEDQLLVDYIRKHGEGCWRS-------LPRAAGLQRCGKSCRLRWMNYL 68

Query: 68  RPNIKRGGMSKEEEDLIIRMHKLLGNRWSLIAGRLPGRTDNEVKNYWNTHLNK 121
           RP++KRG  ++EE++LII++H LLGN+WSLIAGRLPGRTDNE+KNYWNTH+ +
Sbjct: 69  RPDLKRGNFTEEEDELIIKLHSLLGNKWSLIAGRLPGRTDNEIKNYWNTHIKR 114

The following BLAST results are available for this feature:

BLAST of CcUC11G211560.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008456991.1	8.5e-106	81.45	PREDICTED: transcription factor WER-like [Cucumis melo] >KAA0063534.1 transcript...	[more]
XP_004139409.1	3.2e-105	81.05	transcription factor WER [Cucumis sativus]	[more]
XP_038889962.1	3.2e-105	82.66	transcription repressor MYB5 [Benincasa hispida]	[more]
XP_022946431.1	1.1e-100	79.84	transcription factor MYB82 [Cucurbita moschata]	[more]
XP_023545990.1	1.1e-100	79.84	transcription factor MYB82 [Cucurbita pepo subsp. pepo]	[more]

BLAST of CcUC11G211560.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LTF7	1.4e-47	72.80	Transcription factor MYB82 OS=Arabidopsis thaliana OX=3702 GN=MYB82 PE=1 SV=1	[more]
Q96276	1.1e-36	62.18	Transcription factor MYB23 OS=Arabidopsis thaliana OX=3702 GN=MYB23 PE=1 SV=1	[more]
A0A4D6Q4S0	1.5e-36	62.83	Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB2 PE=2 ...	[more]
A0A4D6Q411	1.6e-35	62.83	Transcription factor MYB1 OS=Crocosmia x crocosmiiflora OX=1053288 GN=MYB1 PE=2 ...	[more]
Q9FJA2	6.2e-35	54.81	Transcription factor TT2 OS=Arabidopsis thaliana OX=3702 GN=TT2 PE=1 SV=1	[more]

BLAST of CcUC11G211560.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BGT2	4.1e-106	81.45	Transcription factor WER-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3C427	4.1e-106	81.45	transcription factor WER-like OS=Cucumis melo OX=3656 GN=LOC103496778 PE=4 SV=1	[more]
A0A6J1G3P0	5.2e-101	79.84	transcription factor MYB82 OS=Cucurbita moschata OX=3662 GN=LOC111450489 PE=4 SV...	[more]
A0A6J1FGK0	1.1e-98	77.82	transcription factor WER-like OS=Cucurbita moschata OX=3662 GN=LOC111443992 PE=4...	[more]
A0A6J1KGL3	1.4e-98	78.63	transcription factor MYB82 OS=Cucurbita maxima OX=3661 GN=LOC111493699 PE=4 SV=1	[more]

BLAST of CcUC11G211560.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G52600.1	1.0e-48	72.80	myb domain protein 82	[more]
AT5G40330.1	8.1e-38	62.18	myb domain protein 23	[more]
AT5G35550.1	4.4e-36	54.81	Duplicated homeodomain-like superfamily protein	[more]
AT5G14750.1	5.8e-36	49.43	myb domain protein 66	[more]
AT1G22640.1	9.9e-36	58.41	myb domain protein 3	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001005	SANT/Myb domain	SMART	SM00717	sant	coord: 72..120 e-value: 1.8E-16 score: 70.7 coord: 12..69 e-value: 2.5E-10 score: 50.3
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 8..67 score: 9.895173
IPR001005	SANT/Myb domain	PROSITE	PS50090	MYB_LIKE	coord: 68..118 score: 10.51063
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 76..118 e-value: 1.11265E-12 score: 58.741
IPR001005	SANT/Myb domain	CDD	cd00167	SANT	coord: 16..67 e-value: 2.61017E-9 score: 49.4962
None	No IPR available	GENE3D	1.10.10.60		coord: 5..73 e-value: 4.4E-17 score: 63.7
None	No IPR available	GENE3D	1.10.10.60		coord: 76..158 e-value: 3.8E-20 score: 73.7
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 121..169
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 118..169
None	No IPR available	PANTHER	PTHR47999	TRANSCRIPTION FACTOR MYB8-RELATED-RELATED	coord: 5..214
None	No IPR available	PANTHER	PTHR47999:SF21	TUBER-SPECIFIC AND SUCROSE-RESPONSIVE ELEMENT BINDING FACTOR	coord: 5..214
IPR017930	Myb domain	PFAM	PF00249	Myb_DNA-binding	coord: 14..67 e-value: 1.8E-11 score: 44.1 coord: 73..118 e-value: 3.9E-14 score: 52.6
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 68..122 score: 23.929272
IPR017930	Myb domain	PROSITE	PS51294	HTH_MYB	coord: 12..67 score: 12.878009
IPR009057	Homeobox-like domain superfamily	SUPERFAMILY	46689	Homeodomain-like	coord: 12..114

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC11G211560	CcUC11G211560	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G211560.1-exon	CcUC11G211560.1-exon-CicolChr11:3550484..3550613	exon
CcUC11G211560.1-exon	CcUC11G211560.1-exon-CicolChr11:3550797..3550947	exon
CcUC11G211560.1-exon	CcUC11G211560.1-exon-CicolChr11:3551058..3551460	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G211560.1-cds	CcUC11G211560.1-cds-CicolChr11:3550484..3550613	CDS
CcUC11G211560.1-cds	CcUC11G211560.1-cds-CicolChr11:3550797..3550947	CDS
CcUC11G211560.1-cds	CcUC11G211560.1-cds-CicolChr11:3551058..3551460	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC11G211560.1	CcUC11G211560.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0055085	transmembrane transport
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0022857	transmembrane transporter activity