CcUC11G210190.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC11G210190.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	40S ribosomal protein S30
Location	CicolChr11: 2082109 .. 2085142 (+)
Sequence length	1539
RNA-Seq Expression	CcUC11G210190.1
Synteny	CcUC11G210190.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGGCATATTCAACCCATTGTCCACATGAGGATAGGATTGTTTTTGGAGTCGGTCGTTTGTCTTCACTTTTCTATCATACATAAAGAGATGAACAAATCCTCGAGATTATAAGTTTATTCATAGGGGTATTAGTTGGTTTTTCCCAAATGTTCAACTTTGTTTCTTGTTCCTAAAAACTGGATTTTGTTACCCTCCTCTTTCTTTCATTTTTCAGCCATATAAGTAGTACAAGCGTGTAACGGTAGATTTGAAAGGGAAATAGGATGTGGTAGTACTAGAACAATTTTGTCATGTTTGATTTGAGGCATGTTACGCAGTTGAACTAATAGTAATACTAAATGAATACAAGGTGCTTAAATTTAACCTAAAGGAAGAATGAATATGTCAATTTAGTTCCAATGGTTTATTATTAGACCGCATGCTTTGATAAAAGTATTTATGACGATTTTATCCAATCTTATAAATTATTTAAACCATTGGTTTTAAATTTTTATGGGACTATCAAACTATTTCCAAACTATAAACTTCAAATTTGTAATTTAATATAAAGAAGTTAGTTTATTTGTAATTTAATATAAAGAAGTTAGTTTTTAAAGTTTTATTTGACAAACCATTTGATTTTTTCTTCAATTTTCAATTTTTATTTTTGACAATTATGTTTATAAATAAATATTATGTACTTCTATAATGTTGCTTATAAATATTAAATACTATGTTTATAATATTACTTTTTATTGATGTTTTCAAAAATCACGTTAAGTTTTGACAACTTGTTATTGGTTTTAGAATTTGAATGAATAAAAATTTAGACATTTTTTTTAACAAAGGTGAAAACAATAACTTGTTATTGGTTTTAGAATTTGAATGAATAAAAATTTAGATATTTTTTTTAACAAAGGTGAAAACAATAATGGAAATTTAGAAAGAACCAAAATACAAATTTAAAAATAGAAAAATGGTTGAAAATAATTTATTCATATATTTTTAAATTAAAAAACTTAAGATTAGATTTGGAAACTAAATCTCTAACATTTTGGTCCATGTCATAATTTCTTAATCATGAAGGTCAGTGAATGTAAATATCAAAACTGGGTTGGTACAACAATCAAAATTGTTTTTTTTTTTTTAATGAAAATTTAATCCCGATTGTTAAATAATATCGAACTATTTATAAATATAGCAAAATTTTAATATAGTACGATAGGTAAAAAGTAAAATTTTGTTATATTTGTTATAAACATTTCTTGTTAAGTTTTTAAAGTGAATATTAGCAACCAAGAGTCCTATTGAAAGAATACAAAAAAATAATAATAATAAAAATTAGATTTAATAATTTGGGCCAACCTCATATTGGGCCGACTCAAGAGAAATTGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTGTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGCCCTTTGCGTTCTAGAGTACGAAGCCTACGAGCCGGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTGAGACTCAAACTCTCTATCTTCATTTCAGATATTATTTTCTTCTGTTTAATGTTCCTTATTAATCTGTTTCTTCATCCATGTAATCGACTTTCAGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGGTATGTGTTAATTCTCGCTTTCTTCCTCTCTTTGGTATTGTAATCATGCTCGATCTTTAATCCGTTTCTTGGTTTGTATGAATGCTAATTTTCTCTTGTAGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGACTCGAGAATTCGGCGTAACAGCCATTTTTTCTTGTTATTTGGAGATATTTTATACTTCGGATAGTACTTCTTGATGCGCTTAAGCTGATAGTTGTGTGAACGATGATAGTATTATTTCTTTTAGAGGTTTTTTATTTCGTCATTTGATGCTTCCCTTGCGTTTTAGTTTTGTTGTTTCACAATGAGAGAGTATCATTTTTCTTTTTGGAAAACATTGTTAATGGCGATAACTCGATGTTTAGATTATACCAATTTTTTGTTTCTTGCGTGTTAAGAGTTTCACAGTGTTCCTTTTTGAGGGGAAACGGTACTATTATCATAGGTTCTCTTTATTGATTTGTTCATATATGTGGATGGCCTTTCATTGTTTGGCAATCCGACTATTTTGTCAATAATTTATTCAGCTGTGAATGCAGTGGCGATGTCCTAGCGTTTTTCTTTTTTTTTTTTTTTTTTAGGTTTATATCGTTGGTAATTCCACCTCAAAATGACTGTCAAGGTAGAATAGAATTGTCTCACTCTCTATCTATATCCCATTTTTCTATCATAATCTTCGAGAACCAATTATGGTAATTTAGAAATAAGTCATTTTTTCATAATCTTCGAGAACCAATTATGGTATATTTAGAAATAAGTCATTTTAGTAAAAAATAAAGGTGTCTGTCAAGAAACATTTTTAAAATATATTTTAAACTGTTTTTTTATGAATAGTTTAAATAGTTACTGTTTTGAAACACATTTTTCTTTTACTTCTGTCATTCCAAAAGGGCCCACCAACGTGAATATCTCTGAAATGGTTTTGGTCTTGGGGTCAGTCTCTTTTGCCGATGTTTTAAATTCCTTTTGCTTTGGAACTGGAAGTTCGAGATTTAGTGTTTAAAGGCCTTGAAAATTATGTCTGTACTTCATTCGTTTTTCTTTTGTGTTATGTGTAGGATGCAATGTGTTCATATAAATTGACCTTGTTTTGTTCGTGCTATAAGTTTGTAACTGATTTGCAGATGTCCATGTATGAATGCAATACAATGTTTATAATGTTTGTATGACAATTTCAAATGTTCAAAACTCATTCGTATCCAAGTATTTGTTGTAGA

mRNA sequence

ATGAGGCATATTCAACCCATTGTCCACATGAGGATAGGATTGTTTTTGGACCATATAAGTAGTACAAGCGTAGAAATTGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTGTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGCCCTTTGCGTTCTAGAGTACGAAGCCTACGAGCCGGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAAGAGACTCGAGAATTCGGCGTAACAGCCATTTTTTCTTGTTATTTGGAGATATTTTATACTTCGGATAGTACTTCTTGATGCGCTTAAGCTGATAGTTGTGTGAACGATGATAGTATTATTTCTTTTAGAGGTTTTTTATTTCGTCATTTGATGCTTCCCTTGCGTTTTAGTTTTGTTGTTTCACAATGAGAGAGTATCATTTTTCTTTTTGGAAAACATTGTTAATGGCGATAACTCGATGTTTAGATTATACCAATTTTTTGTTTCTTGCGTGTTAAGAGTTTCACAGTGTTCCTTTTTGAGGGGAAACGGTACTATTATCATAGGTTCTCTTTATTGATTTGTTCATATATGTGGATGGCCTTTCATTGTTTGGCAATCCGACTATTTTGTCAATAATTTATTCAGCTGTGAATGCAGTGGCGATGTCCTAGCGTTTTTCTTTTTTTTTTTTTTTTTTAGGTTTATATCGTTGGTAATTCCACCTCAAAATGACTGTCAAGGTAGAATAGAATTGTCTCACTCTCTATCTATATCCCATTTTTCTATCATAATCTTCGAGAACCAATTATGGTAATTTAGAAATAAGTCATTTTTTCATAATCTTCGAGAACCAATTATGGTATATTTAGAAATAAGTCATTTTAGTAAAAAATAAAGGTGTCTGTCAAGAAACATTTTTAAAATATATTTTAAACTGTTTTTTTATGAATAGTTTAAATAGTTACTGTTTTGAAACACATTTTTCTTTTACTTCTGTCATTCCAAAAGGGCCCACCAACGTGAATATCTCTGAAATGGTTTTGGTCTTGGGGTCAGTCTCTTTTGCCGATGTTTTAAATTCCTTTTGCTTTGGAACTGGAAGTTCGAGATTTAGTGTTTAAAGGCCTTGAAAATTATGTCTGTACTTCATTCGTTTTTCTTTTGTGTTATGTGTAGGATGCAATGTGTTCATATAAATTGACCTTGTTTTGTTCGTGCTATAAGTTTGTAACTGATTTGCAGATGTCCATGTATGAATGCAATACAATGTTTATAATGTTTGTATGACAATTTCAAATGTTCAAAACTCATTCGTATCCAAGTATTTGTTGTAGA

Coding sequence (CDS)

ATGAGGCATATTCAACCCATTGTCCACATGAGGATAGGATTGTTTTTGGACCATATAAGTAGTACAAGCGTAGAAATTGAATATGGGCTGGGCCGGCTGGATCAAATTTTACCGCGTGTGAGCAACCCACTACTATATATTTGTCTGACCAAAACCCTAACCCTAATTTTTGCCCTTTGCGTTCTAGAGTACGAAGCCTACGAGCCGGTCGCCGAACATCCGGAAGAGGAGAAGTCGCTTATCAGATTCGCCATGGGTAAGGTTCATGGATCCTTGGCTCGTGCCGGTAAGGTGAGAGGCCAGACACCAAAGGTTGCTAAACAAGACAAGAAGAAGAAGCCACGAGGACGTGCCCACAAAAGGATGCAATACAACCGCAGATTCGTCACTGCCGTTGTTGGCTTCGGAAAGAAGAGAGGACCAAACTCGTCCGAGAAGTAA

Protein sequence

MRHIQPIVHMRIGLFLDHISSTSVEIEYGLGRLDQILPRVSNPLLYICLTKTLTLIFALCVLEYEAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK

Homology

[Close]

BLAST of CcUC11G210190.1 vs. NCBI nr
Match: KAA0061505.1 (Ribosomal protein S30 [Cucumis melo var. makuwa])

HSP 1 Score: 150.6 bits (379), Expect = 1.1e-32
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 65  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 124
           EA +PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY
Sbjct: 6   EANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 65

Query: 125 NRRFVTAVVGFGKKRGPNSSEK 147
           NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 66  NRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of CcUC11G210190.1 vs. NCBI nr
Match: XP_004141043.2 (40S ribosomal protein S30 [Cucumis sativus])

HSP 1 Score: 132.5 bits (332), Expect = 3.0e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 80  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 139
           LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 140 GPNSSEK 147
           GPNSSEK
Sbjct: 89  GPNSSEK 95

[Close]

BLAST of CcUC11G210190.1 vs. NCBI nr
Match: ESR64610.1 (hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypothetical protein CUMW_126480 [Citrus unshiu])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 54  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 113
           TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 37  TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 96

Query: 114 KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 147
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 97  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 133

[Close]

BLAST of CcUC11G210190.1 vs. NCBI nr
Match: KDO55923.1 (hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis])

HSP 1 Score: 129.4 bits (324), Expect = 2.5e-26
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 54  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 113
           TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 1   TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 60

Query: 114 KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 147
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 61  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97

[Close]

BLAST of CcUC11G210190.1 vs. NCBI nr
Match: KHN42697.1 (Protein transport protein Sec16B [Glycine soja])

HSP 1 Score: 127.9 bits (320), Expect = 7.3e-26
Identity = 64/72 (88.89%), Postives = 67/72 (93.06%), Query Frame = 0


Query: 75   EEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVG 134
            + EK ++   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVG
Sbjct: 1418 KREKFIVAVIMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVG 1477

Query: 135  FGKKRGPNSSEK 147
            FGKKRGPNSSEK
Sbjct: 1478 FGKKRGPNSSEK 1489

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot
Match: P49689 (40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3)

HSP 1 Score: 120.2 bits (300), Expect = 2.0e-26
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 85  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 144
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 145 EK 147
           EK
Sbjct: 61  EK 62

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot
Match: P62866 (40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 87  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 145
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot
Match: P62860 (40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 87  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 145
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot
Match: P62861 (40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 87  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 145
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot
Match: P62862 (40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 9.9e-18
Identity = 46/58 (79.31%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 87  KVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 145
           KVHGSLARAGKVRGQTPKVAKQ+KKKK  GRA +RMQYNRRFV  V  FGKK+GPN++
Sbjct: 1   KVHGSLARAGKVRGQTPKVAKQEKKKKKTGRAKRRMQYNRRFVNVVPTFGKKKGPNAN 58

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL
Match: A0A5A7V6N6 (40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold41G00660 PE=3 SV=1)

HSP 1 Score: 150.6 bits (379), Expect = 5.1e-33
Identity = 76/82 (92.68%), Postives = 78/82 (95.12%), Query Frame = 0


Query: 65  EAYEPVAEHPEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 124
           EA +PV  HPE +KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY
Sbjct: 6   EANKPVDRHPERKKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQY 65

Query: 125 NRRFVTAVVGFGKKRGPNSSEK 147
           NRRFVTAVVGFGKKRGPNSSEK
Sbjct: 66  NRRFVTAVVGFGKKRGPNSSEK 87

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL
Match: A0A0A0LFS8 (40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1)

HSP 1 Score: 132.5 bits (332), Expect = 1.4e-27
Identity = 67/67 (100.00%), Postives = 67/67 (100.00%), Query Frame = 0


Query: 80  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 139
           LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR
Sbjct: 29  LIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKR 88

Query: 140 GPNSSEK 147
           GPNSSEK
Sbjct: 89  GPNSSEK 95

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL
Match: K3YYK8 (40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 66/73 (90.41%), Postives = 66/73 (90.41%), Query Frame = 0


Query: 74  PEEEKSLIRFAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV 133
           PE   S    AMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV
Sbjct: 21  PEHHSSAAAAAMGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVV 80

Query: 134 GFGKKRGPNSSEK 147
           GFGKKRGPNSSEK
Sbjct: 81  GFGKKRGPNSSEK 93

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL
Match: A0A067ELF8 (40S ribosomal protein S30 (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g042287mg PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 54  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 113
           TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 1   TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 60

Query: 114 KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 147
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 61  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 97

[Close]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL
Match: V4UK23 (40S ribosomal protein S30 OS=Citrus clementina OX=85681 GN=CICLE_v10009868mg PE=3 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 1.2e-26
Identity = 71/97 (73.20%), Postives = 77/97 (79.38%), Query Frame = 0


Query: 54  TLIFALCVLEYEAYEPVAEHPEEE----KSLIRFAMGKVHGSLARAGKVRGQTPKVAKQD 113
           TL    C L     E V++  +++    + L R AMGKVHGSLARAGKVRGQTPKVAKQD
Sbjct: 37  TLTLDSCCLPQFGRERVSQQQQQQQRPTRLLKRSAMGKVHGSLARAGKVRGQTPKVAKQD 96

Query: 114 KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 147
           KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK
Sbjct: 97  KKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSSEK 133

[Close]

BLAST of CcUC11G210190.1 vs. TAIR 10
Match: AT2G19750.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 85  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 144
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 145 EK 147
           EK
Sbjct: 61  EK 62

[Close]

BLAST of CcUC11G210190.1 vs. TAIR 10
Match: AT4G29390.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 85  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 144
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 145 EK 147
           EK
Sbjct: 61  EK 62

[Close]

BLAST of CcUC11G210190.1 vs. TAIR 10
Match: AT5G56670.1 (Ribosomal protein S30 family protein )

HSP 1 Score: 120.2 bits (300), Expect = 1.4e-27
Identity = 60/62 (96.77%), Postives = 62/62 (100.00%), Query Frame = 0


Query: 85  MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRMQYNRRFVTAVVGFGKKRGPNSS 144
           MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKR+Q+NRRFVTAVVGFGKKRGPNSS
Sbjct: 1   MGKVHGSLARAGKVRGQTPKVAKQDKKKKPRGRAHKRLQHNRRFVTAVVGFGKKRGPNSS 60

Query: 145 EK 147
           EK
Sbjct: 61  EK 62

The following BLAST results are available for this feature:

BLAST of CcUC11G210190.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061505.1	1.1e-32	92.68	Ribosomal protein S30 [Cucumis melo var. makuwa]	[more]
XP_004141043.2	3.0e-27	100.00	40S ribosomal protein S30 [Cucumis sativus]	[more]
ESR64610.1	2.5e-26	73.20	hypothetical protein CICLE_v10009868mg [Citrus clementina] >GAY50417.1 hypotheti...	[more]
KDO55923.1	2.5e-26	73.20	hypothetical protein CISIN_1g042287mg, partial [Citrus sinensis]	[more]
KHN42697.1	7.3e-26	88.89	Protein transport protein Sec16B [Glycine soja]	[more]

BLAST of CcUC11G210190.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P49689	2.0e-26	96.77	40S ribosomal protein S30 OS=Arabidopsis thaliana OX=3702 GN=RPS30A PE=3 SV=3	[more]
P62866	9.9e-18	79.31	40S ribosomal protein S30 OS=Bos taurus OX=9913 GN=FAU PE=3 SV=1	[more]
P62860	9.9e-18	79.31	40S ribosomal protein S30 OS=Cricetulus griseus OX=10029 GN=FAU PE=3 SV=1	[more]
P62861	9.9e-18	79.31	40S ribosomal protein S30 OS=Homo sapiens OX=9606 GN=FAU PE=1 SV=1	[more]
P62862	9.9e-18	79.31	40S ribosomal protein S30 OS=Mus musculus OX=10090 GN=Fau PE=1 SV=1	[more]

BLAST of CcUC11G210190.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V6N6	5.1e-33	92.68	40S ribosomal protein S30 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffo...	[more]
A0A0A0LFS8	1.4e-27	100.00	40S ribosomal protein S30 OS=Cucumis sativus OX=3659 GN=Csa_2G000610 PE=3 SV=1	[more]
K3YYK8	1.2e-26	90.41	40S ribosomal protein S30 OS=Setaria italica OX=4555 PE=3 SV=1	[more]
A0A067ELF8	1.2e-26	73.20	40S ribosomal protein S30 (Fragment) OS=Citrus sinensis OX=2711 GN=CISIN_1g04228...	[more]
V4UK23	1.2e-26	73.20	40S ribosomal protein S30 OS=Citrus clementina OX=85681 GN=CICLE_v10009868mg PE=...	[more]

BLAST of CcUC11G210190.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G19750.1	1.4e-27	96.77	Ribosomal protein S30 family protein	[more]
AT4G29390.1	1.4e-27	96.77	Ribosomal protein S30 family protein	[more]
AT5G56670.1	1.4e-27	96.77	Ribosomal protein S30 family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006846	Ribosomal protein S30	PFAM	PF04758	Ribosomal_S30	coord: 87..143 e-value: 1.8E-29 score: 101.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 95..121
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 106..121
None	No IPR available	PANTHER	PTHR12650:SF28	40S RIBOSOMAL PROTEIN S30	coord: 85..146
None	No IPR available	PANTHER	PTHR12650	40S RIBOSOMAL PROTEIN S30/UBIQUITIN-LIKE PROTEIN FUBI	coord: 85..146

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC11G210190	CcUC11G210190	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G210190.1-exon	CcUC11G210190.1-exon-CicolChr11:2082109..2082158	exon
CcUC11G210190.1-exon	CcUC11G210190.1-exon-CicolChr11:2082326..2082346	exon
CcUC11G210190.1-exon	CcUC11G210190.1-exon-CicolChr11:2083477..2083661	exon
CcUC11G210190.1-exon	CcUC11G210190.1-exon-CicolChr11:2083759..2083896	exon
CcUC11G210190.1-exon	CcUC11G210190.1-exon-CicolChr11:2083998..2085142	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G210190.1-cds	CcUC11G210190.1-cds-CicolChr11:2082109..2082158	CDS
CcUC11G210190.1-cds	CcUC11G210190.1-cds-CicolChr11:2082326..2082346	CDS
CcUC11G210190.1-cds	CcUC11G210190.1-cds-CicolChr11:2083477..2083661	CDS
CcUC11G210190.1-cds	CcUC11G210190.1-cds-CicolChr11:2083759..2083896	CDS
CcUC11G210190.1-cds	CcUC11G210190.1-cds-CicolChr11:2083998..2084044	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G210190.1-three_prime_utr	CcUC11G210190.1-three_prime_utr-CicolChr11:2084045..2085142	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC11G210190.1	CcUC11G210190.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0022627	cytosolic small ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome