CcUC11G210120.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC11G210120.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr11: 2037319 .. 2039145 (+)
Sequence length	411
RNA-Seq Expression	CcUC11G210120.1
Synteny	CcUC11G210120.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCGGTGGTCATAGGTGGCTAGTGGTGGTCGTCGGAGATGATGCCCAGAGGTTGGCCGGTAGAGGTTACGGGAAGTGGTGATTGGAGGCTAACCGACGACAATCACTACAGATCTATTTAGCCAATGGTGGTTAGAGTTTCTCATACAAATTATGGAGAAATTACTCAAAATTTATTTTTCTAAAAGTTAGTTTCAAATGTTTCTAAACCAACTTATTTTATAAACTCATTTTTTCAAAATTCATTTTAGGTGGTTGCCAAATATATGAATTGTTTTCAAAATAACTTATTTTTTAATTTAATCACTTGGAATAGTATTCCAAACACACCTAAATTTTCCATTTTTACGAGAGTTTGGTAAATCTCTAAAAAAAACATATGTCATATCTATGAACCATATTTATCATTGTCTTCCTCTCTTTCAACCTCTTGTTGCAAAAACCTATGCTTTTTGTTTATGGTTTTTCCACTAACCTTACCTAACTCCCAAATTGACTTACTGTATGTGTTTACAGATGTTCACTTAAGCAACGGACAAACTTTTTTGTCTATAAATTTAACAAAAAATGTCTTCTTGTTTTGAGAAGGAAAAAAAAGATTCATAAACACAATCATTTGCTCTAATCCTACTCTAATAAATAATGCAATAGGATTATAGTAAACTAATATATCTTAGTCAAATTTAATAAAACTAATATATCTTAGTTTATTAATTGATTAAGATTTGACGAATATGGATCCTAATTTACTCTCATCCTATTACATTAAACACAATCATTTGTTTTAAAAATACTCAAATGTTGGAATATAACTCTTCAATCCTTATCAAAATGAAATTAAAGTTTGGAATGGAAATTTAGAATGTTTGATGAAAACAACATTTTGTAAAGGTTAAATTATGACAAAAGAGTTCATTTCAATTTTAAACTCTTATAAGTTTCAAGTTTGGAATGGAAATTTAGAATGTTTGATGAAAACAACATTTTGTAAAGGTTAAATTATGACAAAAGAGCTCATTTCAATTTTAAACTCTTATAAGTTTCAAGTTTATATCTATTCATGTGAACAAACCTAAATATATATATATATATATAGAATAAATATAAAAACATATGTGAACTATATTTGTTGTCGTCCTCCACTTTTGAACCCAAATTTATCTTTCGCAAGTACACATGGAAAATGGCTCGAGTCCCACAACTTTAATGTGTTTTTATTTTAGTACAAAACAAAGTCATTTTATTTATCAAATTGGCTAATTTGTGGTAGGATGCTCTAGCCTCTCCTTAATTGTCCAAACAACACATAAAAATAATTAAAATAAAAAAAAAAAAAAAAAAACTCCTCCGCACGTGAGACTCACATGTTCTTCATGGACTGAAATCTCCTCTCTTTATCCCCAAATTTTGTAGTGTTATAGAACTTCAAATAATCCCCAAACCGGTAGCCGTCAGGGTAAAGAAGCTTCGGCGCCGGAGAAATCAGGGCATCCATCGCCGGATTATAAAACGTGGCAATAGAGAGCCTGCTGCCGTGTTTCTCAGCCAAAACGCGATGCAAAATGCTTTTGTATTTGCCATTGGTGAGCACCTCGATTTGGTCGCCGATGTTGACGAAAATGGCGTTTTTTTTGGACGGCGGGATTTTGAACCATCCGCCGTCGATTTGGAACTCGAGGCCTGGAACTTGATCGTCTTGGAGGAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCCCGGAGGCCTCTGACCAGGTCCGGGTGAGGGCACTCTGGGTATTTCGCAACTTTTGTTCCGACGGATGGGCCTTTGGTTCCGTTGAATAG

mRNA sequence

ATGGTCGAACTTCAAATAATCCCCAAACCGGTAGCCGTCAGGGTAAAGAAGCTTCGGCGCCGGAGAAATCAGGGCATCCATCGCCGGATTATAAAACGTGGCAATAGAGAGCCTGCTGCCGTGTTTCTCAGCCAAAACGCGATGCAAAATGCTTTTGTATTTGCCATTGGTGAGCACCTCGATTTGGTCGCCGATGTTGACGAAAATGGCGTTTTTTTTGGACGGCGGGATTTTGAACCATCCGCCGTCGATTTGGAACTCGAGGCCTGGAACTTGATCGTCTTGGAGGAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCCCGGAGGCCTCTGACCAGGTCCGGGTGAGGGCACTCTGGGTATTTCGCAACTTTTGTTCCGACGGATGGGCCTTTGGTTCCGTTGAATAG

Coding sequence (CDS)

ATGGTCGAACTTCAAATAATCCCCAAACCGGTAGCCGTCAGGGTAAAGAAGCTTCGGCGCCGGAGAAATCAGGGCATCCATCGCCGGATTATAAAACGTGGCAATAGAGAGCCTGCTGCCGTGTTTCTCAGCCAAAACGCGATGCAAAATGCTTTTGTATTTGCCATTGGTGAGCACCTCGATTTGGTCGCCGATGTTGACGAAAATGGCGTTTTTTTTGGACGGCGGGATTTTGAACCATCCGCCGTCGATTTGGAACTCGAGGCCTGGAACTTGATCGTCTTGGAGGAGGAGGATGATTCCGCCGGCGTCGGTGTGCTCCCGGAGGCCTCTGACCAGGTCCGGGTGAGGGCACTCTGGGTATTTCGCAACTTTTGTTCCGACGGATGGGCCTTTGGTTCCGTTGAATAG

Protein sequence

MVELQIIPKPVAVRVKKLRRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDFEPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDGWAFGSVE

Homology

[Close]

BLAST of CcUC11G210120.1 vs. NCBI nr
Match: KAB8110792.1 (hypothetical protein EE612_048215, partial [Oryza sativa])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++R +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 55  RRRGDHGVAARVVERRDGHPVAVVLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRH-V 114

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 115 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 164

[Close]

BLAST of CcUC11G210120.1 vs. NCBI nr
Match: KAB8110794.1 (hypothetical protein EE612_048217, partial [Oryza sativa])

HSP 1 Score: 89.7 bits (221), Expect = 2.0e-14
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++R +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 63  RRRGDHGVAARVVERRDGHPVAVVLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRH-V 122

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 123 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 172

[Close]

BLAST of CcUC11G210120.1 vs. NCBI nr
Match: BAT08386.1 (Os09g0451266, partial [Oryza sativa Japonica Group])

HSP 1 Score: 89.0 bits (219), Expect = 3.5e-14
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++R +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 63  RRRGDHGVAARVVERRDGHPVAVGLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRH-V 122

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 123 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 172

[Close]

BLAST of CcUC11G210120.1 vs. NCBI nr
Match: BAT08384.1 (Os09g0451133, partial [Oryza sativa Japonica Group])

HSP 1 Score: 86.3 bits (212), Expect = 2.3e-13
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++  +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 55  RRRGDDGVAARVVEGRDGHPVAVDLRHHPVHHALVPAVGDHLQLVAEVDDDGVAHGRH-V 114

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 115 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 164

[Close]

BLAST of CcUC11G210120.1 vs. NCBI nr
Match: ACN30941.1 (unknown [Zea mays])

HSP 1 Score: 74.3 bits (181), Expect = 8.9e-10
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 21  RRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDFEP 80
           R + G+  R+++  +    AV   ++A+ +A V  +G+HL LVADV ++GV  GR    P
Sbjct: 78  REDDGVGARVVEGRDGHAVAVGAREHAVHDALVPPVGDHLQLVADVGDDGVAHGRH-VHP 137

Query: 81  SAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRA 119
                +L+A +L+VLE++ D+AGVGV  EA D+VR RA
Sbjct: 138 LPAPEQLQAAHLVVLEQQHDAAGVGVRAEAVDEVRARA 174

[Close]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL
Match: A0A0N7KQW9 (Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0451266 PE=4 SV=1)

HSP 1 Score: 89.0 bits (219), Expect = 1.7e-14
Identity = 50/111 (45.05%), Postives = 73/111 (65.77%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++R +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 63  RRRGDHGVAARVVERRDGHPVAVGLRHHPVDHALVPAVGDHLQLVAEVDDDGVAHGRH-V 122

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 123 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 172

[Close]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL
Match: A0A0P0XNU9 (Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09g0451133 PE=4 SV=1)

HSP 1 Score: 86.3 bits (212), Expect = 1.1e-13
Identity = 49/111 (44.14%), Postives = 72/111 (64.86%), Query Frame = 0


Query: 19  RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDF 78
           RRR + G+  R+++  +  P AV L  + + +A V A+G+HL LVA+VD++GV  GR   
Sbjct: 55  RRRGDDGVAARVVEGRDGHPVAVDLRHHPVHHALVPAVGDHLQLVAEVDDDGVAHGRH-V 114

Query: 79  EPSAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRALWVFRNFCSDG 130
            P AV  +LEA + +VLEE+DD+AGVGV  EA D+V  RA  V  +  ++G
Sbjct: 115 HPLAVLEQLEATDAVVLEEQDDAAGVGVGAEALDEVGARARRVAADLGAEG 164

[Close]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL
Match: C0P9U6 (Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1)

HSP 1 Score: 74.3 bits (181), Expect = 4.3e-10
Identity = 40/98 (40.82%), Postives = 62/98 (63.27%), Query Frame = 0


Query: 21  RRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDFEP 80
           R + G+  R+++  +    AV   ++A+ +A V  +G+HL LVADV ++GV  GR    P
Sbjct: 78  REDDGVGARVVEGRDGHAVAVGAREHAVHDALVPPVGDHLQLVADVGDDGVAHGRH-VHP 137

Query: 81  SAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRA 119
                +L+A +L+VLE++ D+AGVGV  EA D+VR RA
Sbjct: 138 LPAPEQLQAAHLVVLEQQHDAAGVGVRAEAVDEVRARA 174

[Close]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL
Match: A0A0N7KSJ5 (Os11g0187001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11g0187001 PE=4 SV=1)

HSP 1 Score: 71.6 bits (174), Expect = 2.8e-09
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 0


Query: 20  RRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIGEHLDLVADVDENGVFFGRRDFE 79
           RR N G  RR+++ G+    AV   Q+++  A   AI  HLDLV  VD++GV  G  D +
Sbjct: 35  RRSNVGHARRVVEGGDAPAIAVPGGQDSVPCALEAAIANHLDLVPGVDDDGVLDG-LDVD 94

Query: 80  P----SAVDLELEAWNLIVLEEEDDSAGVGVLPEASDQVRVRA 119
           P    +AV   LEA   +VLEEED++AGVGV  EA D++R RA
Sbjct: 95  PPAVAAAVGDHLEAAEAVVLEEEDEAAGVGVGAEAVDELRPRA 136

[Close]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL
Match: T1LS95 (Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1)

HSP 1 Score: 62.8 bits (151), Expect = 1.3e-06
Identity = 49/131 (37.40%), Postives = 72/131 (54.96%), Query Frame = 0


Query: 2   VELQIIPKPVAVRVKKL----RRRRNQGIHRRIIKRGNREPAAVFLSQNAMQNAFVFAIG 61
           V L ++P+  A  V  +     RRR+ G  RR+++ GN    AV   Q+A+  A V AI 
Sbjct: 14  VHLHVVPEREARVVAGVGGGRDRRRDGGSARRVVEGGNGATVAVAGGQDAVPRALVPAIA 73

Query: 62  EH---------LDLVADVDENGVFFGRRDFEPSAVDLE-LEAWNLIVLEEEDDSAGVGVL 119
            H         L+LVA VD++GV  G  D  P+A+  E L+  + +VLEE+D++AGVGV 
Sbjct: 74  HHLTILYYSTYLNLVAGVDDDGVLHG-LDVGPAAIAAEHLQPADAVVLEEKDEAAGVGVG 133

The following BLAST results are available for this feature:

BLAST of CcUC11G210120.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAB8110792.1	2.0e-14	45.05	hypothetical protein EE612_048215, partial [Oryza sativa]	[more]
KAB8110794.1	2.0e-14	45.05	hypothetical protein EE612_048217, partial [Oryza sativa]	[more]
BAT08386.1	3.5e-14	45.05	Os09g0451266, partial [Oryza sativa Japonica Group]	[more]
BAT08384.1	2.3e-13	44.14	Os09g0451133, partial [Oryza sativa Japonica Group]	[more]
ACN30941.1	8.9e-10	40.82	unknown [Zea mays]	[more]

BLAST of CcUC11G210120.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0N7KQW9	1.7e-14	45.05	Os09g0451266 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09...	[more]
A0A0P0XNU9	1.1e-13	44.14	Os09g0451133 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os09...	[more]
C0P9U6	4.3e-10	40.82	Uncharacterized protein OS=Zea mays OX=4577 PE=2 SV=1	[more]
A0A0N7KSJ5	2.8e-09	45.63	Os11g0187001 protein (Fragment) OS=Oryza sativa subsp. japonica OX=39947 GN=Os11...	[more]
T1LS95	1.3e-06	37.40	Uncharacterized protein OS=Triticum urartu OX=4572 PE=4 SV=1	[more]

BLAST of CcUC11G210120.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC11G210120	CcUC11G210120	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G210120.1-exon	CcUC11G210120.1-exon-CicolChr11:2037319..2037325	exon
CcUC11G210120.1-exon	CcUC11G210120.1-exon-CicolChr11:2038742..2039145	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G210120.1-cds	CcUC11G210120.1-cds-CicolChr11:2037319..2037325	CDS
CcUC11G210120.1-cds	CcUC11G210120.1-cds-CicolChr11:2038742..2039145	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC11G210120.1	CcUC11G210120.1-protein	polypeptide