CcUC11G209720.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC11G209720.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	RING-box protein 1a-like
Location	CicolChr11: 1741318 .. 1743959 (-)
Sequence length	557
RNA-Seq Expression	CcUC11G209720.1
Synteny	CcUC11G209720.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GTAAAAAACAATTTTCTGGGAACATAAAAAATTCAAGAGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAAGAAGCATTTTTATCCCGAGTTATATATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCTGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATAAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGGTATTTTCAAAACCCTAATCTTTGCGATAACTGCTCTCACCGTCTTGTTAACCTTCGTTCATCGAAACGCTCGTATCTAATTCGCATGTTATTCTTTCTTAATGCAGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTAAGTTTATCATTATTTAGACCTAAGTTTTAAGATATCTGGAGTGAAAATTTTATCTATATTTATTTTAACCATCTACCATTGTTTGTTATCTAGGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGTACGTTTTCTTATTCCCTCTCCCTATCTCCAACCCATTCACCGAGATACAATTTGTGCTATTATTTTCAATGCCTTTGTTTGCATCTTATTTACGGAGGCGGATGATCGATTGAGCCTCTCTGCTGAATATTTAGAGCAATAATATTTCTAATTAGGAGGATACCAAAGTGTGGTCTATCCATATTATTGATTTAATTACTTCAGCCACTCGACCTTTTTGTAACTATGAAGTATGAACTAGCTTTTATTCAGTTGGATTGGAGTCTTTTTCTGTAGTTGTTTTCTCTTTGGTCAATCGCTCTACCCTTAAATTTTTTCCTACCTTAGCCAGATTGACCCTATCTGTAGTAAGCTAACCCGGAAGGCTAAAATTCTGAAAAGTGAGTTAGTTCTTGGACTTACTTACCAGAACAAGGATTTTGAGAAATAAGGATCGGATAAGGTCTATGATTTGGCCAAAGCTTTAATGTTATTTTTGTTTGCCCTCTCTAGTTTGGCTGCATTTTTTCTTTTTCTTTTTACTGGTAAGAACTGAGGAAAATATATCAGACAGAAAAGGGGAAATAAACAGCATAGGAATCGGTAAGAGAAAACCCTTTCTAGTAGAAAATATTCATGAGAAAATTCTCCGGACGAAAAGATGGAAAACCTGTTTGGTCTAAGAAAAAAAAAAGGCACAGTTTTGAACTCTTGAAAGAAGTAACTCCCAACCTAGACCACTCAATACATACAGAATCGACAATTCAAAATGACTTATTCAACCTTGAAAGGAGAAATCGTCTTCGTGTTTAAAACTTCCGGAGAACTTCAATAAGAAACCTGAAGGAAGCAATACTTGACCAGCCCATCAAATGACCTTTAGGAAGAGAAACAATGCCAACAACTAAACTACCTGCCTTTCTAAGTGCTCAGGATCTTGGTGGTCTCTTAAATGTCCCTTTAAAGAGGCTGGAGGTTAACCATCAACCTTTCTAAGACCACAATAACAGATATCGATGTAGAGGATGCGAACAACTAGGCTAAAACCCTACTTGCCAAACTTTTCTTATAGGTTCTGTTTCCCGATCTCCCTGTTGGAGGAGGTAACCAGAATTCAGCATCTTTTGGTAGCTAGACAATCAGAATGGAAGATATTCCAATGTTGAAACGTTAAATTGACTTGTCCAATCAGGCATCTTAAATCTTCCAGACCATTTATTTTTTCTAATTGGAGTACCTTCCGAAGTTTTTTTGGGTAGTTACATCAAGTAGTTGCAAATCTTGCAGTGGACTGGAGTGAATGTTCTGTTTCAGTTTGAGAAATTAAAAGGGACGAAATTGTTCATGGGGATGTTGATATTAATAGTTCAAATTTATGGCTATATTGACAAACATTTTGACGTTGACAAATATTCTCTCTTTAATAAAGATCATGGACGCAATAGAAATTTGCAAAAAATCATTTATATTAATTGCTTAATATTAGCCATTAATCATATTGAATTCGTAAAGATGATGATCAAGTCCATCATTCTAGCTTCATAATGATGGACTTTATCCAACTTAGAGCATGAAACATTCCCTTGCAATTATCACGAAACATTTGTTTGCCTTTTTTGCTTCGGATGTGGAATTATAGCAGGAGTCAAAGGCGTGGTGTTGAAATATCTTGTGTTTTGTATTTGTAGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACACGTCAAGTTTGTCCATTGGGTATGCGTTTCAAGCTCTTTCCCTACCCTTATCCCACATCTTTATATGAACTTTGAAAATTTAAAGGGAGCTTTGCCATTTTTACAGATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGGTCCTTAAAATTCTCATGGGGCTGTAATGGTTTGACGATTGACTCTCCCCATTTATGATTTCTGAAAATAGCAATCTGAAGATGCATTTTGCTGCACAATTAAAGTTATCCAGAGGGTAAATGCCGCCAACATGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAG

mRNA sequence

GTAAAAAACAATTTTCTGGGAACATAAAAAATTCAAGAGCCAACTAGAGGAATTAAGTCCGCCGTTGCCGACGGAGGAGGAAGAAGCATTTTTATCCCGAGTTATATATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCTGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATAAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACACGTCAAATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGAGGGTAAATGCCGCCAACATGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAG

Coding sequence (CDS)

ATGGCCACCTTGGACTCCGACGTGCCCATGGTTCCGGCCGGCGAGGCTTCGAGCAGTTCTGGTCCTTCATCCACCAAGAAACCCAAGCGTTTCGAGATAAAAAAGTGGAACGCCGTCGCTCTTTGGGCATGGGATATTGTTGTCGATAATTGTGCGATCTGTAGGAATCATATCATGGATCTCTGTATTGAGTGTCAAGCAAACCAGGCTAGCGCAACCAGCGAGGAATGTACTGTGGCTTGGGGGGTGTGTAATCATGCATTTCATTTCCACTGTATCAGTAGATGGTTGAAGACACGTCAAATAATAGCGAGTGGGAGTTTCAGAAGTACGGTCACTAGAACTTTCATGCTGTTGAAGGAGATGAGGGTAAATGCCGCCAACATGAATACATTATCTGATTACATTTCGGAGTTGTTTATAGAAATATGGGTAGCACTTGAACGTTAG

Protein sequence

MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLLKEMRVNAANMNTLSDYISELFIEIWVALER

Homology

[Close]

BLAST of CcUC11G209720.1 vs. NCBI nr
Match: KAF3439695.1 (hypothetical protein FNV43_RR17973 [Rhamnella rubrinervis])

HSP 1 Score: 241.1 bits (614), Expect = 6.0e-60
Identity = 120/145 (82.76%), Postives = 126/145 (86.90%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVP GEASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPVGEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLLK 120
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI A+G+FRSTVTRTFM L 
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQITANGNFRSTVTRTFMRLS 120

Query: 121 EMRVNAANMN--TLSDYISELFIEI 144
                 A M+  TL   +SE  + I
Sbjct: 121 NWASYPALMSSRTLVTRVSESRVHI 145

[Close]

BLAST of CcUC11G209720.1 vs. NCBI nr
Match: RYR21786.1 (hypothetical protein Ahy_B03g067104 isoform B [Arachis hypogaea])

HSP 1 Score: 223.0 bits (567), Expect = 1.7e-54
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGE SSS+   STKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEPSSSAAGPSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLLK 120
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI  SG+FR+ VTR+ ++++
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQITVSGNFRNMVTRSLVMVE 120

[Close]

BLAST of CcUC11G209720.1 vs. NCBI nr
Match: KAA0061463.1 (RING-box protein 1a-like isoform X1 [Cucumis melo var. makuwa] >TYK10811.1 RING-box protein 1a-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 221.9 bits (564), Expect = 3.8e-54
Identity = 111/148 (75.00%), Postives = 122/148 (82.43%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           MV A EASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MVSAVEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQII----ASGSFRSTVTRTFMLLKEMR-- 129
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+     +   F+ T +     + E++  
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKTSSLKMHFVVELQLS 120

Query: 130 --VNAANMNTLSDYISELFIEIWVALER 150
             +NA N+N LSDYI E+FIEI VALER
Sbjct: 121 RGLNATNLNILSDYIPEMFIEIRVALER 148

[Close]

BLAST of CcUC11G209720.1 vs. NCBI nr
Match: PPR86879.1 (hypothetical protein GOBAR_AA33814 [Gossypium barbadense])

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-53
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEAS-SSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDVPMVP GE+S SS+  SSTKKPKRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVPMVPVGESSNSSAASSSTKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLL 120
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQII SGS +S VT++F L 
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIVSGSSKSMVTKSFGLF 120

Query: 121 KEM 123
            ++
Sbjct: 121 YQL 123

[Close]

BLAST of CcUC11G209720.1 vs. NCBI nr
Match: KJB07264.1 (hypothetical protein B456_001G015600 [Gossypium raimondii])

HSP 1 Score: 218.4 bits (555), Expect = 4.2e-53
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEAS-SSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDVPMVP GE+S SS+  SSTKKPKRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVPMVPVGESSNSSAASSSTKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLL 120
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQII SGS +S VT++F L 
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIVSGSSKSMVTKSFGLF 120

Query: 121 KEM 123
            ++
Sbjct: 121 YQL 123

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot
Match: Q940X7 (RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1)

HSP 1 Score: 196.8 bits (499), Expect = 1.7e-49
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 103

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot
Match: Q9M2B0 (RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1)

HSP 1 Score: 176.8 bits (447), Expect = 1.8e-43
Identity = 86/103 (83.50%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 100

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot
Match: P62877 (E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-41
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 93

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot
Match: P62878 (E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1)

HSP 1 Score: 171.0 bits (432), Expect = 1.0e-41
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + SG +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 93

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot
Match: Q8QG64 (RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2)

HSP 1 Score: 169.5 bits (428), Expect = 2.9e-41
Identity = 76/93 (81.72%), Postives = 81/93 (87.10%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           M  A +  + S  +S    KRFE+KKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MAAAMDVDTPSATNSGASKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 93

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL
Match: A0A445A5T8 (zf-rbx1 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067104 PE=4 SV=1)

HSP 1 Score: 223.0 bits (567), Expect = 8.2e-55
Identity = 104/120 (86.67%), Postives = 112/120 (93.33%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGE SSS+   STKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEPSSSAAGPSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLLK 120
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI  SG+FR+ VTR+ ++++
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQITVSGNFRNMVTRSLVMVE 120

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL
Match: A0A5D3CG83 (RING-box protein 1a-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold332G001270 PE=4 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 1.8e-54
Identity = 111/148 (75.00%), Postives = 122/148 (82.43%), Query Frame = 0


Query: 10  MVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 69
           MV A EASSS+GPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ
Sbjct: 1   MVSAVEASSSAGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQ 60

Query: 70  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQII----ASGSFRSTVTRTFMLLKEMR-- 129
           ASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+     +   F+ T +     + E++  
Sbjct: 61  ASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNSEWEFQKTSSLKMHFVVELQLS 120

Query: 130 --VNAANMNTLSDYISELFIEIWVALER 150
             +NA N+N LSDYI E+FIEI VALER
Sbjct: 121 RGLNATNLNILSDYIPEMFIEIRVALER 148

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL
Match: A0A0D2PK63 (zf-rbx1 domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G015600 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEAS-SSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDVPMVP GE+S SS+  SSTKKPKRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVPMVPVGESSNSSAASSSTKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLL 120
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQII SGS +S VT++F L 
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIVSGSSKSMVTKSFGLF 120

Query: 121 KEM 123
            ++
Sbjct: 121 YQL 123

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL
Match: A0A2P5W733 (zf-rbx1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA33814 PE=4 SV=1)

HSP 1 Score: 218.4 bits (555), Expect = 2.0e-53
Identity = 105/123 (85.37%), Postives = 113/123 (91.87%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEAS-SSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDVPMVP GE+S SS+  SSTKKPKRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVPMVPVGESSNSSAASSSTKKPKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIASGSFRSTVTRTFMLL 120
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQII SGS +S VT++F L 
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQIIVSGSSKSMVTKSFGLF 120

Query: 121 KEM 123
            ++
Sbjct: 121 YQL 123

[Close]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL
Match: A0A6J1I027 (RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1)

HSP 1 Score: 215.7 bits (548), Expect = 1.3e-52
Identity = 99/102 (97.06%), Postives = 102/102 (100.00%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60
           MATLDSDVPMVPAGEASSS+GPSS+KKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD
Sbjct: 1   MATLDSDVPMVPAGEASSSAGPSSSKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMD 60

Query: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  LCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 102

[Close]

BLAST of CcUC11G209720.1 vs. TAIR 10
Match: AT5G20570.1 (RING-box 1 )

HSP 1 Score: 196.8 bits (499), Expect = 1.2e-50
Identity = 93/103 (90.29%), Postives = 97/103 (94.17%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 103

[Close]

BLAST of CcUC11G209720.1 vs. TAIR 10
Match: AT5G20570.2 (RING-box 1 )

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-46
Identity = 93/127 (73.23%), Postives = 97/127 (76.38%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAW------------------------GVCNHAFHFHCISR 103
           DLCIECQANQASATSEECTVAW                        GVCNHAFHFHCISR
Sbjct: 61  DLCIECQANQASATSEECTVAWEDDQNNCNKYFCILDCSMKDDHLEGVCNHAFHFHCISR 120

[Close]

BLAST of CcUC11G209720.1 vs. TAIR 10
Match: AT5G20570.3 (RING-box 1 )

HSP 1 Score: 183.0 bits (463), Expect = 1.8e-46
Identity = 92/121 (76.03%), Postives = 96/121 (79.34%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSS-SGPSSTKKPKRFEIKKWNAVALWAWD-------------- 60
           MATLDSDV M+PAGEASSS +  SS KK KRFEIKKW+AVALWAW               
Sbjct: 1   MATLDSDVTMIPAGEASSSVAASSSNKKAKRFEIKKWSAVALWAWGNLENPYTLSSIGLS 60

Query: 61  ----IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 103
               IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ
Sbjct: 61  MFRYIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ 120

[Close]

BLAST of CcUC11G209720.1 vs. TAIR 10
Match: AT3G42830.1 (RING/U-box superfamily protein )

HSP 1 Score: 176.8 bits (447), Expect = 1.3e-44
Identity = 86/103 (83.50%), Postives = 93/103 (90.29%), Query Frame = 0


Query: 1   MATLDSDVPMVPAGEASSSSGP-SSTKKPKRFEIKKWNAVALWAWDIVVDNCAICRNHIM 60
           MA+L+SDV M   GE+SS S P SS+K  KRFE+KKW+AVALWAWDIVVDNCAICRNHIM
Sbjct: 1   MASLNSDVIM---GESSSISVPSSSSKNSKRFELKKWSAVALWAWDIVVDNCAICRNHIM 60

Query: 61  DLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQI 103
           DLCIEC ANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQ+
Sbjct: 61  DLCIECLANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 100

[Close]

BLAST of CcUC11G209720.1 vs. TAIR 10
Match: AT3G05870.1 (anaphase-promoting complex/cyclosome 11 )

HSP 1 Score: 70.9 bits (172), Expect = 1.0e-12
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 0


Query: 27  KPKRFEIKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH 86
           K K   I  W+AVA W WD   + C ICR      C +C+        ++C + WG CNH
Sbjct: 2   KVKILRILLWHAVASWTWDAQDETCGICRMAFDGCCPDCK-----LPGDDCPLIWGACNH 61

Query: 87  AFHFHCISRWLKTR 101
           AFH HCI +W+ ++
Sbjct: 62  AFHLHCILKWVNSQ 70

The following BLAST results are available for this feature:

BLAST of CcUC11G209720.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3439695.1	6.0e-60	82.76	hypothetical protein FNV43_RR17973 [Rhamnella rubrinervis]	[more]
RYR21786.1	1.7e-54	86.67	hypothetical protein Ahy_B03g067104 isoform B [Arachis hypogaea]	[more]
KAA0061463.1	3.8e-54	75.00	RING-box protein 1a-like isoform X1 [Cucumis melo var. makuwa] >TYK10811.1 RING-...	[more]
PPR86879.1	4.2e-53	85.37	hypothetical protein GOBAR_AA33814 [Gossypium barbadense]	[more]
KJB07264.1	4.2e-53	85.37	hypothetical protein B456_001G015600 [Gossypium raimondii]	[more]

BLAST of CcUC11G209720.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q940X7	1.7e-49	90.29	RING-box protein 1a OS=Arabidopsis thaliana OX=3702 GN=RBX1A PE=1 SV=1	[more]
Q9M2B0	1.8e-43	83.50	RING-box protein 1b OS=Arabidopsis thaliana OX=3702 GN=RBX1B PE=2 SV=1	[more]
P62877	1.0e-41	82.80	E3 ubiquitin-protein ligase RBX1 OS=Homo sapiens OX=9606 GN=RBX1 PE=1 SV=1	[more]
P62878	1.0e-41	82.80	E3 ubiquitin-protein ligase RBX1 OS=Mus musculus OX=10090 GN=Rbx1 PE=1 SV=1	[more]
Q8QG64	2.9e-41	81.72	RING-box protein 1 OS=Salmo salar OX=8030 GN=rbx1 PE=2 SV=2	[more]

BLAST of CcUC11G209720.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A445A5T8	8.2e-55	86.67	zf-rbx1 domain-containing protein OS=Arachis hypogaea OX=3818 GN=Ahy_B03g067104 ...	[more]
A0A5D3CG83	1.8e-54	75.00	RING-box protein 1a-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0D2PK63	2.0e-53	85.37	zf-rbx1 domain-containing protein OS=Gossypium raimondii OX=29730 GN=B456_001G01...	[more]
A0A2P5W733	2.0e-53	85.37	zf-rbx1 domain-containing protein OS=Gossypium barbadense OX=3634 GN=GOBAR_AA338...	[more]
A0A6J1I027	1.3e-52	97.06	RING-box protein 1a OS=Cucurbita maxima OX=3661 GN=LOC111467761 PE=4 SV=1	[more]

BLAST of CcUC11G209720.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G20570.1	1.2e-50	90.29	RING-box 1	[more]
AT5G20570.2	1.4e-46	73.23	RING-box 1	[more]
AT5G20570.3	1.8e-46	76.03	RING-box 1	[more]
AT3G42830.1	1.3e-44	83.50	RING/U-box superfamily protein	[more]
AT3G05870.1	1.0e-12	39.19	anaphase-promoting complex/cyclosome 11	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR024766	Zinc finger, RING-H2-type	PFAM	PF12678	zf-rbx1	coord: 49..101 e-value: 1.1E-20 score: 73.6
IPR013083	Zinc finger, RING/FYVE/PHD-type	GENE3D	3.30.40.10	Zinc/RING finger domain, C3HC4 (zinc finger)	coord: 18..104 e-value: 4.1E-28 score: 99.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..27
None	No IPR available	PANTHER	PTHR11210	RING BOX	coord: 1..103
None	No IPR available	PANTHER	PTHR11210:SF41	E3 UBIQUITIN-PROTEIN LIGASE RBX1	coord: 1..103
None	No IPR available	CDD	cd16485	mRING-H2-C3H2C2D_RBX1	coord: 49..102 e-value: 1.74581E-39 score: 125.559
None	No IPR available	SUPERFAMILY	57850	RING/U-box	coord: 29..101

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC11G209720	CcUC11G209720	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1741318..1741401	exon
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1741515..1741577	exon
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1741678..1741736	exon
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1743406..1743465	exon
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1743562..1743612	exon
CcUC11G209720.1-exon	CcUC11G209720.1-exon-CicolChr11:1743720..1743959	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1741318..1741401	CDS
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1741515..1741577	CDS
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1741678..1741736	CDS
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1743406..1743465	CDS
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1743562..1743612	CDS
CcUC11G209720.1-cds	CcUC11G209720.1-cds-CicolChr11:1743720..1743852	CDS

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC11G209720.1-five_prime_utr	CcUC11G209720.1-five_prime_utr-CicolChr11:1743853..1743959	five_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC11G209720.1	CcUC11G209720.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0016567	protein ubiquitination
biological_process	GO:0006511	ubiquitin-dependent protein catabolic process
cellular_component	GO:0031461	cullin-RING ubiquitin ligase complex
cellular_component	GO:0005634	nucleus
molecular_function	GO:0008270	zinc ion binding
molecular_function	GO:0097602	cullin family protein binding
molecular_function	GO:0061630	ubiquitin protein ligase activity