Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGATAGTATTGTGTGGTAGAAAATGGTTTTGTAAAGGTAATATTGAATAATGGATTATTATATATAGGCTTCGGCATACAGTGCCTCAAAGTGGGCAATTGAAGGCTTAACCAAATCAGTTGCAAAAGAAGTGGGAGATGGAATGACGATTGTAGCATTGGATCCTGGCATTATCAATACACAGATGCTTGCATTCCACTTTGGCGATTTAGCTTCTCAATACCTCTCCAAAACAATGGTAAATTTGCAAATATAGTAAAATTTAAATTCAACTTTTGAAATCTATCAGTAATATACCTTATCGTTAATAAGGATCTATCCGTGATAGATCATATCATTGATAGGAATCTATTAGCAATAAAGTCTATCACTTATTGATTTTGCTATTTTTGCAATTATTTGAAAATTTTGCAATACACTTAATTATTATCCTTAAAAATGCTACCAAATGTAGCTACCAATAGTGAATTTAGAACGTAGGTAATCTTTTAATTTCAATTACTTTTTTAGAAAGATACTAGAGATTTGAGGGATTAGGTGCACCTGAGTATCTCAACTAGGTGGAAACATTTTTAGTACTCTCGTTATAACCCAAACCATTACATTGATAAGGAGAAATCAGAACTTAAAAGGAGAGCAGGAGTAAAGCTCAAGGTACAAAATTTAGGTTAGAGAGAAGCAAAAGATGAAAAAAAAGATAAAAGAAAACAAGAAATTACATGTGGATGGGCTATAATTATTTAATAAATTTGATTGATGAGTCCGAAAGGCGGAGTGGGTGCAATCGGGTTGCACCCATCCTCTATGCAGCCCAAGTCTTACCCAATGATATTTTTTTGGTTTAATTTTTTATTTGTATGGGAAAGAGTAGGGAAACATTGTAGTTGCTGCACTTAATCATTGCTCTTTTAAAAGGTGGTGCTGCAGTCGAATTTCTTAATTGTAGATGGAGAGTTTCGGTTACAAACATAGAGTTCATAATGGCTTGGGGAAATTGTCACATTTTTTTTTTTATGAAGAAATGTTGTTGTAGCTCAGGATTGTATTCATCAAAAGCTTCCGCATTTTCTTTGGTAAATGTTCCGTGGATTCTTGAGATTTCTTCCGAACAGGCATCTTCCTTCTGTCGAAGCTACAAAATGGATTCTTGA mRNA sequence ATGATAGCTTCGGCATACAGTGCCTCAAAGTGGGCAATTGAAGGCTTAACCAAATCAGTTGCAAAAGAAGTGGGAGATGGAATGACGATTAAATGTTGTTGTAGCTCAGGATTGTATTCATCAAAAGCTTCCGCATTTTCTTTGGTAAATGTTCCGTGGATTCTTGAGATTTCTTCCGAACAGGCATCTTCCTTCTGTCGAAGCTACAAAATGGATTCTTGA Coding sequence (CDS) ATGATAGCTTCGGCATACAGTGCCTCAAAGTGGGCAATTGAAGGCTTAACCAAATCAGTTGCAAAAGAAGTGGGAGATGGAATGACGATTAAATGTTGTTGTAGCTCAGGATTGTATTCATCAAAAGCTTCCGCATTTTCTTTGGTAAATGTTCCGTGGATTCTTGAGATTTCTTCCGAACAGGCATCTTCCTTCTGTCGAAGCTACAAAATGGATTCTTGA Protein sequence MIASAYSASKWAIEGLTKSVAKEVGDGMTIKCCCSSGLYSSKASAFSLVNVPWILEISSEQASSFCRSYKMDS
Homology
BLAST of CcUC11G208840.1 vs. TAIR 10
Match: AT1G10310.1 (NAD(P)-binding Rossmann-fold superfamily protein ) HSP 1 Score: 40.0 bits (92), Expect = 9.3e-04 Identity = 17/29 (58.62%), Postives = 24/29 (82.76%), Query Frame = 0
Query: 2 IASAYSASKWAIEGLTKSVAKEVGDGMTI 31
+ + Y ASKWAIEGL+++VAKEV +GM +
Sbjct: 162 LVAPYCASKWAIEGLSRAVAKEVVEGMAV 190
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| AT1G10310.1 | 9.3e-04 | 58.62 | NAD(P)-binding Rossmann-fold superfamily protein | [more] |
InterPro
Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31
| IPR Term | IPR Description | Source | Source Term | Source Description | Alignment |
|---|
| None | No IPR available | GENE3D | 3.40.50.720 | | coord: 1..64
e-value: 5.0E-6
score: 28.4 |
| IPR036291 | NAD(P)-binding domain superfamily | SUPERFAMILY | 51735 | NAD(P)-binding Rossmann-fold domains | coord: 3..46 |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC11G208840.1-exon | CcUC11G208840.1-exon-CicolChr11:840516..840521 | exon |
| CcUC11G208840.1-exon | CcUC11G208840.1-exon-CicolChr11:840584..840667 | exon |
| CcUC11G208840.1-exon | CcUC11G208840.1-exon-CicolChr11:841536..841667 | exon |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC11G208840.1-cds | CcUC11G208840.1-cds-CicolChr11:840516..840521 | CDS |
| CcUC11G208840.1-cds | CcUC11G208840.1-cds-CicolChr11:840584..840667 | CDS |
| CcUC11G208840.1-cds | CcUC11G208840.1-cds-CicolChr11:841536..841667 | CDS |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC11G208840.1 | CcUC11G208840.1-protein | polypeptide |
|
