CcUC10G206730.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206730.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Legume-specific protein
Location	CicolChr10: 33696576 .. 33696839 (+)
Sequence length	264
RNA-Seq Expression	CcUC10G206730.1
Synteny	CcUC10G206730.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAAGGTCTAATTCCCTTTGTTTACAAAGCCATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCCTCCGCCTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAGTTCCAATCCGACGGCTCGCCTTCTTCAAAATCACCCTCTTCCACCGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACAACTCGACGGGTTGCCGCCTAA

mRNA sequence

ATGGAAGGTCTAATTCCCTTTGTTTACAAAGCCATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCCTCCGCCTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAGTTCCAATCCGACGGCTCGCCTTCTTCAAAATCACCCTCTTCCACCGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACAACTCGACGGGTTGCCGCCTAA

Coding sequence (CDS)

ATGGAAGGTCTAATTCCCTTTGTTTACAAAGCCATCGTTCAATACAAGAATGAAAAACAAGTACCGGCGATCCGATCTTGGCTCTGCGACTCCCCCTCCGCCTCCTACATCAGACTTCCCAGTGGTGATTCCGGCCGATTTCAGTTCCAATCCGACGGCTCGCCTTCTTCAAAATCACCCTCTTCCACCGCCACCCAGATTCTGGTTTCTACCGGAGTTCAATCGCCGCTCCGCCATCTGACAACTCGACGGGTTGCCGCCTAA

Protein sequence

MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGSPSSKSPSSTATQILVSTGVQSPLRHLTTRRVAA

Homology

[Close]

BLAST of CcUC10G206730.1 vs. NCBI nr
Match: KAA0044116.1 (legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific protein [Cucumis melo var. makuwa])

HSP 1 Score: 161.0 bits (406), Expect = 4.6e-36
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSTATQILVSTGVQSPLRHLTTRRVAA 88
            S+TATQILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of CcUC10G206730.1 vs. NCBI nr
Match: KAE8650999.1 (hypothetical protein Csa_002313 [Cucumis sativus])

HSP 1 Score: 157.1 bits (396), Expect = 6.7e-35
Identity = 82/86 (95.35%), Postives = 82/86 (95.35%), Query Frame = 0


Query: 3   GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGSPSSKSP-S 62
           GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQFQSD SPSSKSP S
Sbjct: 109 GLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSPTS 168

Query: 63  STATQILVSTGVQSPLRHLTTRRVAA 88
           ST TQILVSTGVQSPLRHLTTRRVAA
Sbjct: 169 STTTQILVSTGVQSPLRHLTTRRVAA 194

[Close]

BLAST of CcUC10G206730.1 vs. NCBI nr
Match: KAG7017269.1 (hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 77/89 (86.52%), Postives = 79/89 (88.76%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQ--FQSDGSPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQ    S  SPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPSSTATQILVSTGVQSPLRHLTTRRVAA 88
          S SST TQIL+STGVQSPLRHLT RRVAA
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVAA 89

[Close]

BLAST of CcUC10G206730.1 vs. NCBI nr
Match: KAG6580521.1 (hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 144.1 bits (362), Expect = 5.9e-31
Identity = 76/89 (85.39%), Postives = 78/89 (87.64%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQ--FQSDGSPSSK 60
          MEG+IPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQ    S  SPSSK
Sbjct: 1  MEGIIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQDGSYSAASPSSK 60

Query: 61 SPSSTATQILVSTGVQSPLRHLTTRRVAA 88
          S SST TQIL+STGVQSPLRHLT RRV A
Sbjct: 61 SASSTTTQILISTGVQSPLRHLTPRRVVA 89

[Close]

BLAST of CcUC10G206730.1 vs. NCBI nr
Match: KAG6596392.1 (hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 133.3 bits (334), Expect = 1.0e-27
Identity = 73/91 (80.22%), Postives = 76/91 (83.52%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGS----PS 60
          MEGLIPFVY+AIV YKN+KQVP IRSWL DSPSASYIRLPSGDSGRF FQSDGS      
Sbjct: 1  MEGLIPFVYRAIVHYKNDKQVPPIRSWLTDSPSASYIRLPSGDSGRFLFQSDGSYTATSP 60

Query: 61 SKSPSSTATQILVSTGVQSPLRHLTTRRVAA 88
          SKS SSTATQILV+TGVQSPLR L   RVAA
Sbjct: 61 SKSVSSTATQILVATGVQSPLRQLAPSRVAA 91

[Close]

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL
Match: A0A5D3DNC7 (Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G001410 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 84/89 (94.38%), Postives = 85/89 (95.51%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 --SSTATQILVSTGVQSPLRHLTTRRVAA 88
            S+TATQILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTATQILVSTGVQSPLRHLTTRRVAA 89

[Close]

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL
Match: A0A0A0LD26 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1)

HSP 1 Score: 161.0 bits (406), Expect = 2.2e-36
Identity = 84/88 (95.45%), Postives = 84/88 (95.45%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQSDGSPSSKSP 60
          MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPS SYIRLPSGDSGRFQFQSD SPSSKSP
Sbjct: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSTSYIRLPSGDSGRFQFQSDASPSSKSP 60

Query: 61 -SSTATQILVSTGVQSPLRHLTTRRVAA 88
           SST TQILVSTGVQSPLRHLTTRRVAA
Sbjct: 61 TSSTTTQILVSTGVQSPLRHLTTRRVAA 88

[Close]

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL
Match: K7MT87 (Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 5.9e-21
Identity = 62/94 (65.96%), Postives = 73/94 (77.66%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQ------SDGS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ Q      S  S
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTTRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL
Match: A0A0B2P904 (Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1)

HSP 1 Score: 107.1 bits (266), Expect = 3.8e-20
Identity = 61/94 (64.89%), Postives = 72/94 (76.60%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQ------SDGS 60
          MEGLIPFVYKAI+QYK +K    I SWLC+SPS SY+RLP+GDSGRFQ Q      S  S
Sbjct: 1  MEGLIPFVYKAIMQYKGDKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIQAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTTRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT R +AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRPIAA 94

[Close]

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL
Match: C6SZB5 (Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 2.5e-19
Identity = 60/94 (63.83%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRFQFQ------SDGS 60
          ME LIPFVYKAI+QYK  K    I SWLC+SPS SY+RLP+GDSGRFQ +      S  S
Sbjct: 1  MESLIPFVYKAIMQYKGGKDGHPIGSWLCESPSYSYMRLPAGDSGRFQIRAPASSFSAAS 60

Query: 61 PSSKSP-SSTATQILVSTGVQSPLRHLTTRRVAA 88
          PSS +P SS+ATQI+VS+GVQSP + LT RR+AA
Sbjct: 61 PSSTNPNSSSATQIIVSSGVQSPHQCLTHRRIAA 94

[Close]

BLAST of CcUC10G206730.1 vs. TAIR 10
Match: AT2G37750.1 (unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 48.1 bits (113), Expect = 4.1e-06
Identity = 39/86 (45.35%), Postives = 46/86 (53.49%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQ--YKNEKQVPAIRSWLCDSPSASYIRLPSGDSGRF-----QFQSDG 60
          MEGLIP VYKA++Q  Y NE Q            S+ Y+RLP GDSGRF          G
Sbjct: 1  MEGLIPLVYKAVMQIRYGNESQ---------QLSSSYYVRLP-GDSGRFVRSDLDVSGPG 60

Query: 61 SPSSK--SPSSTATQILVSTGVQSPL 78
          S SS   S S++ T   V  GVQSP+
Sbjct: 61 SNSSNRASSSTSTTTFAVYAGVQSPV 76

[Close]

BLAST of CcUC10G206730.1 vs. TAIR 10
Match: AT5G02090.1 (unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 30; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 45.1 bits (105), Expect = 3.4e-05
Identity = 25/50 (50.00%), Postives = 31/50 (62.00%), Query Frame = 0


Query: 1  MEGLIPFVYKAIVQYKNEKQVPAIRSWLCDSPSAS--YIRLPSGDSGRFQ 49
          MEGLIPF+YKAIV YK E    ++      SPS +  Y+RLP   S RF+
Sbjct: 1  MEGLIPFLYKAIVMYKREGSFSSVLLSDHHSPSNAGYYMRLPGDSSSRFR 50

The following BLAST results are available for this feature:

BLAST of CcUC10G206730.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0044116.1	4.6e-36	94.38	legume-specific protein [Cucumis melo var. makuwa] >TYK25022.1 legume-specific p...	[more]
KAE8650999.1	6.7e-35	95.35	hypothetical protein Csa_002313 [Cucumis sativus]	[more]
KAG7017269.1	2.0e-31	86.52	hypothetical protein SDJN02_19132, partial [Cucurbita argyrosperma subsp. argyro...	[more]
KAG6580521.1	5.9e-31	85.39	hypothetical protein SDJN03_20523, partial [Cucurbita argyrosperma subsp. sorori...	[more]
KAG6596392.1	1.0e-27	80.22	hypothetical protein SDJN03_09572, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC10G206730.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G206730.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DNC7	2.2e-36	94.38	Legume-specific protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A0A0LD26	2.2e-36	95.45	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G733930 PE=4 SV=1	[more]
K7MT87	5.9e-21	65.96	Uncharacterized protein OS=Glycine max OX=3847 GN=GLYMA_18G187300 PE=4 SV=1	[more]
A0A0B2P904	3.8e-20	64.89	Uncharacterized protein OS=Glycine soja OX=3848 GN=D0Y65_048924 PE=4 SV=1	[more]
C6SZB5	2.5e-19	63.83	Uncharacterized protein OS=Glycine max OX=3847 PE=2 SV=1	[more]

BLAST of CcUC10G206730.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G37750.1	4.1e-06	45.35	unknown protein; Has 21 Blast hits to 21 proteins in 7 species: Archae - 0; Bact...	[more]
AT5G02090.1	3.4e-05	50.00	unknown protein; Has 30 Blast hits to 30 proteins in 10 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR34670	EXPRESSED PROTEIN	coord: 1..87
None	No IPR available	PANTHER	PTHR34670:SF10	LEGUME-SPECIFIC PROTEIN	coord: 1..87

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G206730	CcUC10G206730	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G206730.1-exon	CcUC10G206730.1-exon-CicolChr10:33696576..33696839	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G206730.1-cds	CcUC10G206730.1-cds-CicolChr10:33696576..33696839	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G206730.1	CcUC10G206730.1-protein	polypeptide