CcUC10G206180.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G206180.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 33274497 .. 33278317 (-)
Sequence length	180
RNA-Seq Expression	CcUC10G206180.1
Synteny	CcUC10G206180.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAATGGTAACACAAATCCAAACAGCAAAAAAGGGAAGGTGGGAAAGAGAGGGAATAATCACTTATGAATAAGCATTACAAGGATTCTAGAAGAAGTTATACCATTTTGCTAGCAAACTTTTTTTTTTTTTTTTTTTGGGTGTTGGAAAGTATTAACCACAAAGCTACTTTTCTTCTTCTTTGTTTCTAATATGAAGCCATGGAATTCCCTTTTAGTAGCTTATGATGGGAATCAGATGCTGATAGAATTGGCTTGTTTTTCTTTTGCCTCCTTTCTTCACATTTTGGCCAACCCATCTTTACCAATATATTGTTAAAGCCTCTAATCAATTCCTTATGTTCACTGCCAATTCATTCATTCAATGCCAACCTACCCTTTGGTCCACTTTATTCTTCTACCACTTCCTTTTTTTTCTCTACTACCAACCATAACAATTATCTCTAGTTATTTTACCCTTTGCAAAACGGAGTGCAACTCAACAAGAAATTTCCTTTAAAAGAGGTAATATACTTATTTATTTATTTATTTTTTTTTTGGGAGGGGGGGAGGGGGGGTTAATTATATTAAAAATGAAGGGCGTGTGTATGTTAATTGTGACCTGACAATAATGTGAGCCGAAATCAATAATTTTACGCAGTTGAAGTAACAATGAGACGACCCTCTAATTACAATTTTTGAGGAAGGAGACCATAAGTATCTCAACCATCTTAGAAACTACCATATAGTTTTGAAGGTTTATATTATAACATAATGAAGAAAAAGTCAAATGCACAAATTATACAAAGATGGTAGGTCTACATAGAATATGAGATTGATGTTATTTCAAAACTTGAAACCCTTTCTAAAATTTGTTCCATTTTCTTCAATTTCTTTTTTGGAATGGAATCTGTTTTTTCTTTTTGGATAGAATTGGATTCTTGTACATGAAAACAATTGATTTAGGATGCTTTGGAATCAGATCCCGCGGTGTCCAATCATCAAAGTTTGTCTTTTTCCGATTACCCATTGGAAGAAGAAAAATTATTCAGAAGAGTATATTATGGCATGGCACATATAATTTCCCTTTGAACTCACCTTCAATTCTTGAACAAACATTTGTGAAGGAAACACTAAAGCATATGTAGCAGCCCGTGTTTGTAAATAGGTTGACAACGACTGTTGTTTCACTTATTGAACAGGGTTCTACAGTGGTTGATCTGCAGCCCCTAGATACCGAGGGCATGCTCGAGGCAAATGGTTGATTTCGAAACAAGACATCATTCATCATTCTAGGAAGTTGCCAAACAAGAAGGTTGAAATCATCCACCAAACACAAAAGAAACTTCAAAACTGGATGAGTAAATTTATACTAGATGGCTGTGTGAAGCAAAACTTTAAAGAAACAGTTCCACACCATCATATCAATCATATTGACAAATACAATATATGTATGTGATGTTTATTTGCATGGGATACATATATGTAGTGTAATGGGGCAAGTGGAAATGACAAGCCCAGAGATAAAGAGGACACTGATCGCCCATACAAACAGATTGGGCTGTTTCTAACAATCAAACTTCAGGTAGCCTAATCATATGCTGGGTCATGGAAACAAAAAATGTGGCCTAAAAGACCTTTTCACCAGCAGGACAAATCTATTGGATAAAATGCATTGAAAAGAACAGAAATAAATAGGGATGTGACACTCAAGCTTGTAATGAAGAGCAAAAAACTTTTTATGTTCCTATAGTGGGATGAAGATGAATTTAGAGGATATTTGGACAATGAATGAATGAATCAACAAGATTCAGTTGCTTCTCACTATACATACTTGTCTCATTCCTTGTAATTTTCTTCATTAGTAACCTTTACCTTCATCTTCATTCAAAATGCGCTTCTGGAAGTCACTCACCATGAGAGGCAATCCTTCTCTTAGTGAGATTTTGGGTTCCCAGTTGAGTAATGACTTGGCTTTGCTAATATCAGGTTTTCTCTTGTGAGGATCATCAGCAGTATTTGGTCTAAACTCTATTGTTGCACTTGGATCTATAGTTTCTTTGACAACCTATACAAACAAGAAAAAGAAAAGTTGAAGTTGTTGCTACAGAAACTCTCTCTCTCTCTCTCTCTCTCATTGAGGAGTGGACATGAAATAGTCGGGCACAGCTTGCAACAAAGTTCGTATTACAGAAAACCCCTTTTTATGGATCTGGAAATGACTTGAAAATTCGTGAATATTAATATTAATGAGTCAATTAGAAAGACAAACCTGGGCCAGCTCCAGCATGGTAAACTCTCCTGGATTACCCAAGTTGAAAGGCCCTACATGTTCACCTTCCATCAATGCCACCAGTCCATTAACCTACCATGGGAGATTATTCAAGGTCTTCAGTATAGGTTCATTAAATCACGATAAAATGCTTTATTTTAGAAGTTGAGTCGTCTCTTTGAGACCAAGTTTTCAATTGATGCCCGTAAGTGGTAACCACCGAAATAACAAATCAAATGAATAATTACAAGCATCTATCTTCACTAATTTACATCCAAAGACAGGATAGAACCAGAAGATGTTGGTTGTAAATTACAAACAAATTTGAGAGTTGTCTTAAATCTTCCTGTTTATGCCTTCACATTTCCACTTGAAATATGAAATCAACGTAACTGGGTGAAGATTGCAAATGCATTCAATGAAATTCTGAATATCTTAAAGCATATTATATTGACTAGAATGGCAATATATAGTCATCCAACAACGCTAAGGCAATCCACAGTTTGTAAGTCAAACGAAGTCAGAAGAATGCAAAGGCATCAATAATATTTTTAAGTGATGCTATGCAGACAAAAGTCAATATGCCATACCAAGTCAGAGACATATTGAAAGCTTCGTGTCTGCTTTCCATCACCATATACAGTCAATGGTTGTTTGCGAATGGCCTGAAAATTACTAAGAGCGTTAGAAAATACATTTCAAGCATTGATCATGATCAGTTTTCAAAACGAATATCTTATATAGGGGAAGGGGAAAAATCAAGTCAGATGATTAACCTGTGCAACAAAGTTGCTGACAACACGCCCATCATCTAAACACATACGGGGTCCATATGTGTTAAAAATGCGAGCAATTCGAACCTACAAACAGATAATCTCACCAATTGTCAAATGAATCAGGACACTGCAAGATACTAATCCTTATAAAGAATACAGGGATCCCTTTTCTTCATGTTCAATGCAAGCTTCCTAACAGAAGCTAATGGAATACAACTAAAAGTCCGCATAGTTACCTCAACTTCAGCACCTCTGTGATAATCCATAGTTAAGGTTTCTGCTGTTCTCTTTCCTTCATCATAGCAGCTTCTCTCCCCTAAGAATTACAAATTATTTTCTGAAAATTGTAACTCTGATCCAGTATGCAAGAAACGCTTGTGGTATATATCGAAACTAAACTTTTTACCTATAGGGTTTACATTTCCCCAATATGTTTCCTTCTGAGGATGCTCAAGTGGATCACCATAAACCTCACTCGTACTGGTGAGTAGAAATCTAGCCCCAATTCTCTTTGCCAGGCCAAGCATATTCAAGGTACCCATTACATTTGTCTTGTGAAAAGTGGTCAAGGATCTCCAGGCAAAAACATAATAATTCTAACAACAAAATTTTCTTCCTAAAATGCAATGATAGCTAACACGACAATCAAGAATCTGAAAGTGAAACTACTGGAAAAAGGATATAATAGTCTTGACAGGATTGTACTTGTAATGAACAGGAGATGCTGGACAAGCCAAGTGATAGATTTGATCCACCTCCAAAAGAATTGGCTCAACCACATCATGTCGAATGA

mRNA sequence

ATGGGAATGTGTAATGGGGCAAGTGGAAATGACAAGCCCAGAGATAAAGAGGACACTGATCGCCCATACAAACAGATTGGGCTGTTTCTAACAATCAAACTTCAGGAGATGCTGGACAAGCCAAGTGATAGATTTGATCCACCTCCAAAAGAATTGGCTCAACCACATCATGTCGAATGA

Coding sequence (CDS)

ATGGGAATGTGTAATGGGGCAAGTGGAAATGACAAGCCCAGAGATAAAGAGGACACTGATCGCCCATACAAACAGATTGGGCTGTTTCTAACAATCAAACTTCAGGAGATGCTGGACAAGCCAAGTGATAGATTTGATCCACCTCCAAAAGAATTGGCTCAACCACATCATGTCGAATGA

Protein sequence

MGMCNGASGNDKPRDKEDTDRPYKQIGLFLTIKLQEMLDKPSDRFDPPPKELAQPHHVE

Homology

The following BLAST results are available for this feature:

BLAST of CcUC10G206180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G206180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G206180.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G206180.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..24
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 39..59

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G206180	CcUC10G206180	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G206180.1-exon	CcUC10G206180.1-exon-CicolChr10:33274497..33274571	exon
CcUC10G206180.1-exon	CcUC10G206180.1-exon-CicolChr10:33276753..33276848	exon
CcUC10G206180.1-exon	CcUC10G206180.1-exon-CicolChr10:33278309..33278317	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G206180.1-cds	CcUC10G206180.1-cds-CicolChr10:33274497..33274571	CDS
CcUC10G206180.1-cds	CcUC10G206180.1-cds-CicolChr10:33276753..33276848	CDS
CcUC10G206180.1-cds	CcUC10G206180.1-cds-CicolChr10:33278309..33278317	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G206180.1	CcUC10G206180.1-protein	polypeptide