CcUC10G202440.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G202440.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 29683640 .. 29683996 (-)
Sequence length	357
RNA-Seq Expression	CcUC10G202440.1
Synteny	CcUC10G202440.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATGAGAAGAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTCGCTGTCGGAGGAGATATCGAAAGGGGAAGATGAAGTTTTTCTGAGGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGGAACCAAAAAGATTGAAAAAGAAGAAAATAAAGAGAGTTTGGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

mRNA sequence

ATGAATGAGAAGAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTCGCTGTCGGAGGAGATATCGAAAGGGGAAGATGAAGTTTTTCTGAGGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGGAACCAAAAAGATTGAAAAAGAAGAAAATAAAGAGAGTTTGGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

Coding sequence (CDS)

ATGAATGAGAAGAGTAGTAGAGAGAAGAATGCAAACAAAGGCAATGTCAGCAACGACGGTGGCGACATACATTCTCCGGCGGTGTCGTCGCTGTCGGAGGAGATATCGAAAGGGGAAGATGAAGTTTTTCTGAGGATGAAAAAGAGAAAGAGATCAGAGAGTGAAGAAGAAAGTCCAAGATTCAGAAAAGGAACCAAAAAGATTGAAAAAGAAGAAAATAAAGAGAGTTTGGAAAATAAATCAGAAATGGAGTGGGTCCCAGGGATGAACATTCCAGGACCAATACCTAATCTTTTTGCCATTATTCAAGAGCAATTCAATCTTCATACTATCTTGGATGATCCACGTCTTCATTGA

Protein sequence

MNEKSSREKNANKGNVSNDGGDIHSPAVSSLSEEISKGEDEVFLRMKKRKRSESEEESPRFRKGTKKIEKEENKESLENKSEMEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRLH

Homology

[Close]

BLAST of CcUC10G202440.1 vs. NCBI nr
Match: KGN59339.1 (hypothetical protein Csa_002297 [Cucumis sativus])

HSP 1 Score: 113.6 bits (283), Expect = 1.1e-21
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 4   KSSREKNANKGNVSNDGGDIHSPAVSSLSEE--ISKGEDEVFLRMKKRKRSESEEESPR- 63
           K   +K+AN GN+ ND GD++SP +SSLSEE  +S+GE++V  +M+KR +SE ++ESPR 
Sbjct: 121 KEITKKSANNGNIGND-GDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRI 180

Query: 64  ---FRKGTKKIEKEENKESLENKSE-MEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPR 118
                +  KK EKEE KESLEN SE M W+PG+ IPGPIP++  IIQ+QFNLHTILDDP 
Sbjct: 181 IISITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPF 239

[Close]

BLAST of CcUC10G202440.1 vs. NCBI nr
Match: TYK25435.1 (hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa])

HSP 1 Score: 110.2 bits (274), Expect = 1.3e-20
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 6   SREKNANKGNVSNDGGDIHSPAVSSLSEE-ISKGEDEVFLRMKKRKRSESEEESPR---F 65
           +++ + NKG+VSND  D+ SP +SSLSE  IS+GE++V  +M+KR  SE ++ESPR    
Sbjct: 184 TKKISTNKGHVSNDAKDVDSPTLSSLSEVLISEGENDVLQKMQKRLESE-DQESPRIITI 243

Query: 66  RKGTKKIEKEENKESLENKSE-MEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRL 118
            +  KK EKEE KESLEN SE M WVPG+ IPGPIP+L  II +QFNLHTILDDP L
Sbjct: 244 SESKKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLL 299

[Close]

BLAST of CcUC10G202440.1 vs. ExPASy TrEMBL
Match: A0A0A0LEJ7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 5.6e-22
Identity = 70/121 (57.85%), Postives = 91/121 (75.21%), Query Frame = 0


Query: 4   KSSREKNANKGNVSNDGGDIHSPAVSSLSEE--ISKGEDEVFLRMKKRKRSESEEESPR- 63
           K   +K+AN GN+ ND GD++SP +SSLSEE  +S+GE++V  +M+KR +SE ++ESPR 
Sbjct: 121 KEITKKSANNGNIGND-GDVNSPTLSSLSEEMILSEGENDVLQKMQKRLKSE-DQESPRI 180

Query: 64  ---FRKGTKKIEKEENKESLENKSE-MEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPR 118
                +  KK EKEE KESLEN SE M W+PG+ IPGPIP++  IIQ+QFNLHTILDDP 
Sbjct: 181 IISITESKKKSEKEETKESLENNSEIMGWIPGIEIPGPIPDIDPIIQQQFNLHTILDDPF 239

[Close]

BLAST of CcUC10G202440.1 vs. ExPASy TrEMBL
Match: A0A5D3DPL9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G005790 PE=4 SV=1)

HSP 1 Score: 110.2 bits (274), Expect = 6.2e-21
Identity = 69/117 (58.97%), Postives = 87/117 (74.36%), Query Frame = 0


Query: 6   SREKNANKGNVSNDGGDIHSPAVSSLSEE-ISKGEDEVFLRMKKRKRSESEEESPR---F 65
           +++ + NKG+VSND  D+ SP +SSLSE  IS+GE++V  +M+KR  SE ++ESPR    
Sbjct: 184 TKKISTNKGHVSNDAKDVDSPTLSSLSEVLISEGENDVLQKMQKRLESE-DQESPRIITI 243

Query: 66  RKGTKKIEKEENKESLENKSE-MEWVPGMNIPGPIPNLFAIIQEQFNLHTILDDPRL 118
            +  KK EKEE KESLEN SE M WVPG+ IPGPIP+L  II +QFNLHTILDDP L
Sbjct: 244 SESKKKSEKEETKESLENNSEIMGWVPGIEIPGPIPDLDPIIHQQFNLHTILDDPLL 299

The following BLAST results are available for this feature:

BLAST of CcUC10G202440.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN59339.1	1.1e-21	57.85	hypothetical protein Csa_002297 [Cucumis sativus]	[more]
TYK25435.1	1.3e-20	58.97	hypothetical protein E5676_scaffold352G005790 [Cucumis melo var. makuwa]	[more]

BLAST of CcUC10G202440.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G202440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LEJ7	5.6e-22	57.85	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G812110 PE=4 SV=1	[more]
A0A5D3DPL9	6.2e-21	58.97	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of CcUC10G202440.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..82
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 11..32
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 34..81

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G202440	CcUC10G202440	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G202440.1-exon	CcUC10G202440.1-exon-CicolChr10:29683640..29683996	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G202440.1-cds	CcUC10G202440.1-cds-CicolChr10:29683640..29683996	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G202440.1	CcUC10G202440.1-protein	polypeptide