CcUC10G201420.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G201420.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 28522481 .. 28522975 (+)
Sequence length	255
RNA-Seq Expression	CcUC10G201420.1
Synteny	CcUC10G201420.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGGTACAAAACCATCGAGTGCGAAACGCTATTATTCAGACGTTTCCACTCTTGTCGTGTCCTTGCAGGAAAGAGGTTTCTTCGGTAACATAAGATTCAATTGTAAGAAGAATCATACGGTTAATTCTTGTTTGATCTGCAAAATCTCGGTATCGTCTTTCTTTGGTCAGATTTTTTCGTCGACGATTGACATAGAAAGCAAGAGAACCCTATGATCAATATTTTGATGGTCAATTATTGCAGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

mRNA sequence

GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

Coding sequence (CDS)

GCGACAACGGAGCTGACCACGGGCGCTGGTTTGGTTCTTTTCCTTCTCCTTCTTTCGATGCCTAAGTTCAGTGATGGTTTTACTTGTGTGGACAGCTTCTTTGCTTCTGTTGCCTTTGGTGGTGCCGCCGCTTCCTCCGCCACCGTTGGCGGTTCTCAGCTTGCCGGTTTTGATATTGGCTGTTTTGTTATTGTTGGCTTTCTCTTCTCCCCGTCGGATACCCAACACTGCCATGATAATTTGCTGCTGAGGTGA

Protein sequence

ATTELTTGAGLVLFLLLLSMPKFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPSDTQHCHDNLLLR

Homology

[Close]

BLAST of CcUC10G201420.1 vs. NCBI nr
Match: XP_008443266.1 (PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 uncharacterized protein E6C27_scaffold135G002710 [Cucumis melo var. makuwa] >TYK25526.1 uncharacterized protein E5676_scaffold352G006780 [Cucumis melo var. makuwa])

HSP 1 Score: 83.6 bits (205), Expect = 9.1e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]

BLAST of CcUC10G201420.1 vs. ExPASy TrEMBL
Match: A0A5D3DPE0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold352G006780 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]

BLAST of CcUC10G201420.1 vs. ExPASy TrEMBL
Match: A0A1S3B754 (uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=4 SV=1)

HSP 1 Score: 83.6 bits (205), Expect = 4.4e-13
Identity = 42/51 (82.35%), Postives = 45/51 (88.24%), Query Frame = 0


Query: 22  KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPS 73
           KFSDGFTCVDSFFASVA GGAAASS TVG S+ AGFDIGCFV++GFLF  S
Sbjct: 54  KFSDGFTCVDSFFASVATGGAAASSTTVGSSRAAGFDIGCFVVLGFLFFSS 104

[Close]

BLAST of CcUC10G201420.1 vs. ExPASy TrEMBL
Match: A0A0A0LBQ9 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1)

HSP 1 Score: 82.4 bits (202), Expect = 9.8e-13
Identity = 42/52 (80.77%), Postives = 46/52 (88.46%), Query Frame = 0


Query: 22 KFSDGFTCVDSFFASVAFGGAAASSATVGGSQLAGFDIGCFVIVGFLFSPSD 74
          KFSDGFT VDSFFASVA GGAAASSATVG S+ AGFDIGCFV++GFLF  +D
Sbjct: 43 KFSDGFTSVDSFFASVATGGAAASSATVGDSRAAGFDIGCFVVLGFLFFSTD 94

The following BLAST results are available for this feature:

BLAST of CcUC10G201420.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443266.1	9.1e-13	82.35	PREDICTED: uncharacterized protein LOC103486890 [Cucumis melo] >KAA0053878.1 unc...	[more]

BLAST of CcUC10G201420.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G201420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DPE0	4.4e-13	82.35	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B754	4.4e-13	82.35	uncharacterized protein LOC103486890 OS=Cucumis melo OX=3656 GN=LOC103486890 PE=...	[more]
A0A0A0LBQ9	9.8e-13	80.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G821040 PE=4 SV=1	[more]

BLAST of CcUC10G201420.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G201420	CcUC10G201420	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G201420.1-exon	CcUC10G201420.1-exon-CicolChr10:28522481..28522540	exon
CcUC10G201420.1-exon	CcUC10G201420.1-exon-CicolChr10:28522781..28522975	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G201420.1-cds	CcUC10G201420.1-cds-CicolChr10:28522481..28522540	CDS
CcUC10G201420.1-cds	CcUC10G201420.1-cds-CicolChr10:28522781..28522975	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G201420.1	CcUC10G201420.1-protein	polypeptide