CcUC10G197970.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G197970.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 24624262 .. 24629576 (+)
Sequence length	471
RNA-Seq Expression	CcUC10G197970.1
Synteny	CcUC10G197970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTTTGGATTTCATCCCTTTCCAATGCTTCTAATTCCTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCATCAACTACTTTTGGGTGAGATTTTCAAACCTTCTTTCTTTTTCTTTTCTGAAAGTACACAATTTCATATGTTTAACTAAGTCTCTCTTTAGAAATAGAGAGTGAATTAGAAGAAAGGAGACATCTTAATTTGCTATTTAACCAAAATTTTATATCCAACTTTTTTTTCCCTTTCTTCCCTCCTTATTGATTAGTTTTTATTTGCATTTTTTTTTAATATTCATATAATAATGAATATTATTATTGTTGTTTGACTAATTTTCATAAAATTTAATTAGTAGATGTAAACTTAAGATGAATATTAGGATTAAAATTGGACAATATCTAAAATTAGAGGGTTGTTTTGTAAATGAACCAAAATATTTACAATTATAAAAAAATTTCATTGTCTATTTGTGATAAACCGCATTATACTATTAGTTGTGTCTATCATGTGATAGTAATCTATCGTAGCAAAACTGTGATATTTTACTATCATTTAAAATAATTCCTCAAAATTATATATAATTCAAAGTATAGAAGTTAAAATAGGTTTTTTTTTTTTTTTTAAATCTTATTTAAATAAAAATGATGTTTTTGAAAGACATCTTTTTCTCCGGTAAATCGAAACACGACCTTAGTTTCTTCTAATTCTTTTTATTTGGTTTCTAGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAGAGGAGGAAGGTCCGGCAGCGCGGGGGCAGGCTCCAACAACCACCGGCCGGGAAAAGCAAATCAGAAGAACGCAGCTTCCAATTTGATGAAGTCTAATAATATAATAATAATTACCACTCTGCTGCTCTCTTCCTATTTATACTTCTTCTAGTCTTCTTTTTCCATTGATTTCCATATGGAATAATATGAAAGGATTATATATATGTAAGCAAAATTTTGTTATCAACCACTTATACACACGGATCTTACAATCATAAGATTTGGTTTTATCAATTAATTGGATTTCAATGTCGTGGCATTTTTGTCTCAGAAAAATTTTCATTGGTCGCACCAAAATACTTATGGAGTCCACTGACATTGAAAGATGTATTTATAAGGACAATTTTCTATTGTGAACAAAAGAAGTATAGTATGTCATATTGGTCATGGTACATAACTAAGGTAATTAATACCTTGTTCAATTTAAGTTATTCCATACTTGTTGTTTGAAAATTATTAGTTTGAGTTTTTGTATTATAATCTTTGTTGTTTAGGGTTTATTGTTGATCATTTTGAAGCAATTCAACCGTTTTCTAAGTTATCTATGTTTTTATGATTAATTATTGTGATTGTATTTTCATTCCATAATTAGTACGTGGATATGACTTCGTAGAATGTTTATAAAGTCTGAGTTGATGCATAGATTCATTCAACAATGACCAATAGTTTGCATTTAAAATGTGGCAAGAGGATACTAGAACTTCCATTATACGATATTACCACTTTAGACATAAGTCATAACATACTTTATTTTGGTCTCAGTCTTTTCTTGATTGAGTATCCTTTATTTTTAAAGAAGATAGCGAATTCTAGGTGACACTTTTGTTTTGTTGTATACTTTGTTGAGGTTAAAAAAAAAAGGAAAAAGTTGATAATAAATTTATTTGTATTTTCCAACTCTCTTTTTAACATCTTTTTCTTGAGATGTTGAAAAAGATTGGAGGAATAAGAAAGAAAAATATGGGAGGGATGTGAGTTGCTTTGAATGTTTCCAAGAAACAGAATCATTTCTTCCGCGAAGAAAAAGGATTTTCTTTCATAAAGAAGCAAAAAGGGTTTTAGGATGAGACACAAACATGATAGATAATTATATATATGCAACCCCCTTTCTATGTATATATATATAGGATTATTGCATTGAATAACACTCTTAGAGATAATAATTAAGTGCCTAACAACATTTTCTAAAAATTACAAATATAGCAAAATCTATTAATGATATACTGAGAGACCACGTTAGTAATATGTCTATCACTAATAGACTTTGAAAGCAAAATCTAAATTTTGTTATAATTGCAATTTTTTTTATATTGTGCTATATTTACAAATACTTTGAACTTAATTGTTATATTTTCAAATGCCCCTTATACCAAATGATAAGCCAAGTTCAAATGAGAAAGTGGTCCAAGTTTGTTCATCTTAGTATCAAGTTTTGTCTCTTCTCTAAATATATGATCTACATGTGTGTCTTATGTTCGAAGATTTGAAAAACTTAATTGGGGGAGTCGTATGAATGACTCAAAATTTGGACCCTAAAGTAAAATATACCCTCTTTCTAGATTTTTTTTTTTTTTAAACTATTTTGCTTACATCCTATCAAGGATGTGAAATTACTAAAATGGACCATTTTTTTTTGTTGGAAATTTCTTATGGCCCCACATGTCCATTAATAAATGAGTTTTGTTGTTATTTTGATATCTTAATTAATTAAGAAGGAGTTAGATTATTACGCGTCTTTGAAAGGAATATTAACTATGGACAAAACGTATAGAAATTAATAACTATATTAATTCTAATTTAAGGAGGGGATGAATTAGAATTAAATTTATTGTGTTTTGATCGAATTAACGTCATATAGATATTAGGTCGTTTGCTCTCATCCCCATTAGAGAGTTTTCCTTTCTCTACAATTATCTACGTTCCCAATGTGCTTATGATGTAGCACCATATGGACCGTTAGCTAGTGTGTATCATTCCTAAAAAAGGAGGAGAAATTAAGGAGAATTACATATAAGAAGAAAACATGATCTATCTAGACTTGGAAGATTATCATTTACCTAGTATTTCAGCTTTGCAATGGATTTAGGTACGATTCTGCTTTTAAACTCTAAGAAATAGATTTGTGGTTTTAAGTTTACAATTATAGTTCCTTAATATTTCCATCATATTTTGCATATGCATTAAGATATCTCGCTCTATCGCTCATTTTTGTATTTAGATTTTTCAGTTCATCGCTCTCTCTATTTTTTCTCGCTCTTGCTCCTCTCATTCCTTTGGGTTTAGAATTTTTTTGATCCTCACTCCCATTCCTTTTTTAGTATAGAATTTTATGTTCCTCACTCTCTATTTCAATCTTTCACTCTTGCTAATTCTCTCATTCCTTTGGGTTAAATTTTTCCTCCTCATACTAGCTATACTCTTTGCTCCATAGTAGCAAGAGTCCAACAAGAGTGCACAAAAAATCGTTTTAGTAATTTTAATAGATGACATAAACAAAACGTTAGAAAATGGGGCATATTTCATTTTGGACCCAAAATTTAACTACTAGGCAATCATCTCTTAAATATTCTTATCGCATGTAAGTTTAAGCAAACAGTTATTTCTCCTCCTGTCGTTCTAAATTGTAAAACTTAATTTGAATGGAGCAAAAATGTGCTCCACCAAAATATTTTATAATATATACTAAGAAACCATGAAACCTTGATTATAAGAATCTTTTATGGTGCTATAATGATTTTGTTGTCAAATGATGTTCCAAAATTGGTGTAAAATGAATAACTTGAATTTGTATTAATTTGGTATAAATGTAGTATAACCATTAACCTCGAATGTTTATCTTCTCAATTCTTTTTTTCTTAGATGTGAACATATTTTGAAGGCTTTTTAGTCCGTTCTCAAATATAAAATTGTCTTAAGAACTTCTTTAATTTTGCTTCGATTATGACTTTGTCTCAAATCAACTTAAACTTTTTGGTGAATCGTCAATTGATGTCTTGAAAACTCAATTCTTCAAACATATATATATTTTGTATCTTCAAAGAAGTCTTTTATTCTTCGAGTCTTTGACTCAAAGAAATTTAAGGAGTTTTCAGTCTCTTGGAAATTTTTATTTAATTTTTTAGGTTCTAAATCTTCTCTTTGAATTCTTCTTTTAAAAGTTTGACCCGTTGAACCCTCCAAATAAAAGATAAGACTTTTCAATTTATAGAGTTTTCTTGAGTCTTATTGTGTAGGCTTGAGCTTTGTCAAGTTTGGATGCAACCCGCTAGGCTTGAGATTTGTTGGCTTGAGCCCAACCCTTTAGACTTGGACTTTGTTGGCTTTGGATCTAACTTTATCGGTTTGAACTTCAAGCCGAAATTGTCATTCATTTTGAGCCTTGTAGACTTGCTCAATCTTAGACTTAGTAGCCATATGACCCAATTCGATCAGGCTAGGTTTAGTTGATCAAATGACCATAAGAAGACACATAATATTATTTGAAATTTTTCCACTTCTTGTCTTCAAATTTAATTGTAGACACACATCTCAATTTATAATTTGTCTTATATTTAGCATATAATTTGTCCGTAATTTAAGAATAATGATAAGATAATTTATGATTCGCCCAAAAATTTTTGATGCATTTTTGCATATTGTCATATATTTACATAGAATAGTTAAAAATATAGAAATTCTAACTCATTAGTTATTTTTAAGTTTTGATTATAGGTTTTAAGATATATACTTTTAACTTTGAGTTTTGAATTGAGTTTTTGTTCATTATTAGTCAAAGATCTAAAATGTCAAATCTCAAATTACAAAGGTTAAGCATTTTCTCTGGTGGATTTTCCATGATTTCATTTCATCCAGTCAAAATACTTTTCTCCGTCATATTGATATTGATCCTATGTGCCCTTTAGGTGGGGTGGCTTTGGAAACAATTGAGCACGCCCTCTTTGAGTGCGTGAGAGCTAAGAGAAGTTCGAAATGTTTGCTCCCAATTTGGGGAAATTTGTCATCGATCAGTTTTTGAATAAGAGAAGGATTAATTAATGAGTTTATATTTTTGGTAGATTGAGAGTTTAAGTTGGCTTGTCTGGATGTTTGGGCAATCTAGGGGACCGAAATAAACTGGTTCATAAGGTGGTTGTCCATTCTGTGGTTTTTCGATTTCAATGAGTGGTAGACTAACTGGTTTCTTTTTTGGGTAACACAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTGGTGGTCCGAATTTCTGGGTTATGTTTATCGATGCAGTTTGCCAAGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATAAAAGGAGCAGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTATTGTTTTAG

mRNA sequence

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTTTGGATTTCATCCCTTTCCAATGCTTCTAATTCCTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCATCAACTACTTTTGGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAGAGGAGGAAGGTCCGGCAGCGCGGGGGCAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTGGTGGTCCGAATTTCTGGGTTATGTTTATCGATGCAGTTTGCCAAGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATAAAAGGAGCAGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTATTGTTTTAG

Coding sequence (CDS)

ATGGGAGTATATGCATGCCTCCTTATTTCCCTCTTATTAATCCTTCAAACTGTTTGGATTTCATCCCTTTCCAATGCTTCTAATTCCTTTCAATATGAATCTCTTTCCAATTCCAACCACTCATTCAACTCTCTCCCTCCTCTTCAACCCCATCATCATCATCATCATCATCAACTACTTTTGGTGAACGGCGGAGAAGAGAATAAGACGGCGGAGAGTTGGGTTGTTTTAAAAGCTAGAGGAGGAAGGTCCGGCAGCGCGGGGGCAGAGATTGGGCTTGATATTGATAGGAAAGAGGAGTTGCTTAGCCCTTTTGGTGGTCCGAATTTCTGGGTTATGTTTATCGATGCAGTTTGCCAAGTTAGGGAGGAAATAACAGGTTTTGGAGCAATCTTGTTAGATGAGAAGGCAACGATAAAAGGAGCAGAGTACTGTGAAGGCAACGATGAAAGGAGCGGAGTATTGTTTTAG

Protein sequence

MGVYACLLISLLLILQTVWISSLSNASNSFQYESLSNSNHSFNSLPPLQPHHHHHHHQLLLVNGGEENKTAESWVVLKARGGRSGSAGAEIGLDIDRKEELLSPFGGPNFWVMFIDAVCQVREEITGFGAILLDEKATIKGAEYCEGNDERSGVLF

Homology

[Close]

BLAST of CcUC10G197970.1 vs. NCBI nr
Match: KGN58897.2 (hypothetical protein Csa_001334 [Cucumis sativus])

HSP 1 Score: 89.4 bits (220), Expect = 3.1e-14
Identity = 62/92 (67.39%), Postives = 65/92 (70.65%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNAS-NSFQYESLSNSNHSFNSLPPLQPHHHHHHHQL 60
          MGVYACLLISLLLILQTVWISSLSNAS NSF YESLSN        PPLQ HH H   +L
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSN--------PPLQTHHLHQQPRL 60

Query: 61 LLVNGGEENKT-AESWVVLKAR-GGRSGSAGA 90
                E NKT AESW V KA+ GGRSG+ GA
Sbjct: 61 GGGGKEENNKTAAESWTVSKAKGGGRSGAGGA 84

[Close]

BLAST of CcUC10G197970.1 vs. NCBI nr
Match: KAG6581619.1 (hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 80.5 bits (197), Expect = 1.4e-11
Identity = 59/91 (64.84%), Postives = 62/91 (68.13%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNASNSFQYESLSNSNHSFNSLPPLQPHHHHHHHQLL 60
          MGVYACLLISLLLI QT  ISSLSN        SL  SNHSFNS  PLQ     HHHQLL
Sbjct: 1  MGVYACLLISLLLIFQTHSISSLSNG-------SLPISNHSFNS-QPLQ-----HHHQLL 60

Query: 61 LV--NGGEENKTAESWVVLKARGGRSGSAGA 90
          +   + GEEN T    VVLKA+GGRSGSAGA
Sbjct: 61 VSGRDDGEENTTTVKLVVLKAKGGRSGSAGA 78

[Close]

BLAST of CcUC10G197970.1 vs. ExPASy TrEMBL
Match: A0A0A0LCI5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1)

HSP 1 Score: 93.6 bits (231), Expect = 7.9e-16
Identity = 64/94 (68.09%), Postives = 69/94 (73.40%), Query Frame = 0


Query: 1  MGVYACLLISLLLILQTVWISSLSNAS-NSFQYESLSNSNHSFNSLPPLQPHHHHHHHQL 60
          MGVYACLLISLLLILQTVWISSLSNAS NSF YESLSN        PPLQ HH H   +L
Sbjct: 1  MGVYACLLISLLLILQTVWISSLSNASNNSFPYESLSN--------PPLQTHHLHQQPRL 60

Query: 61 LLVNGGEE--NKT-AESWVVLKAR-GGRSGSAGA 90
          +   GG+E  NKT AESW V KA+ GGRSG+ GA
Sbjct: 61 VKGGGGKEENNKTAAESWTVSKAKGGGRSGAGGA 86

The following BLAST results are available for this feature:

BLAST of CcUC10G197970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN58897.2	3.1e-14	67.39	hypothetical protein Csa_001334 [Cucumis sativus]	[more]
KAG6581619.1	1.4e-11	64.84	hypothetical protein SDJN03_21621, partial [Cucurbita argyrosperma subsp. sorori...	[more]

BLAST of CcUC10G197970.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G197970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0LCI5	7.9e-16	68.09	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G710765 PE=4 SV=1	[more]

BLAST of CcUC10G197970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G197970	CcUC10G197970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G197970.1-exon	CcUC10G197970.1-exon-CicolChr10:24624262..24624445	exon
CcUC10G197970.1-exon	CcUC10G197970.1-exon-CicolChr10:24625082..24625165	exon
CcUC10G197970.1-exon	CcUC10G197970.1-exon-CicolChr10:24629374..24629576	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G197970.1-cds	CcUC10G197970.1-cds-CicolChr10:24624262..24624445	CDS
CcUC10G197970.1-cds	CcUC10G197970.1-cds-CicolChr10:24625082..24625165	CDS
CcUC10G197970.1-cds	CcUC10G197970.1-cds-CicolChr10:24629374..24629576	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G197970.1	CcUC10G197970.1-protein	polypeptide