CcUC10G197520.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G197520.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	arabinogalactan peptide 23-like
Location	CicolChr10: 24167110 .. 24174048 (+)
Sequence length	537
RNA-Seq Expression	CcUC10G197520.1
Synteny	CcUC10G197520.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCATTGGATGCAAAGCTATAGGTCCTTATAGGATACTTACAAACACTCACAAAATAAAACTAACTTAATAAATGATTTCAACCAAGAGCTTGGTTAGAAAAATTAATAAACCCTCATATTGAACTTCAAATCTATTATTGATACTCTTAAGTCTTAAGACAACTCACTCCATAATTATCTTGATCAAAACTAATCCAATTAATTAATTTAAACAACAAATTTAAAGTAAGATATGAAAGAAAAGACAACACCAAAAGGGTTGAATAAACACAAATTTTCTAATACTAATAATATGAGCTTTGAACAACATTACAATACATTTTAAAGACCAAAAGGTTGTGCATAAGACCAAAAACTCAAAAGTCATTCAAACATAATTAATTGGAAATTTGTAGAAAATAAGACCTAAGAATTTAAAAACTTAATTGCATACTAACTAATAAGTCAAAATGCAAAACTAAAAGTGTAGAAAGTCTTCAAATTGTCTTAAATAACTCCTCTAAAAGGTGGCAAGCTTGATTTGTACGTTTGACATCACGTTTTTTCGTACAGTGCACACCTAACATCATTTTCTTCACAAAATATACATTTTTTACCACCATGTCATCTTCCAAACTATAAGACTTTTCCGTGCCATATTCACTTCATTCTCTTCTTACTCATTAGACTAACATTATATATAAAGTTTGACTCACAATTATATATTTCTTCTTGTAAATTTGCTAGCTTCTGAAGATATAGCGTGAATATCTCTTGAATCTTTTTCGCTTTGCTTATTGTAATTGCTCTTTCGAGTACATGCAATGACTCTAAGGTTGAATTCACATTAACATAGACTATTTATGAGATTTTATCAACCTATAGGGACCAAATTCTAACTTTTAGAACCATAAAGCATTGAAACTAAATTCTAACTTTCTTCGAATCATAGGATCAAATATGCAACTTAACAGAAAAAAATAATCCTTTTAGTCCCCCAGTTTTGAACAATTTGTAAGTTTGGTCCATAAATTTTAAAAATGTACATTTTTAGTCTCAAAATTTATAAGAATGGGTCTATTTAGTCCCTGTGTTTTTATAATGTAACTTTTTAATCTTGGAGTTTTTAAAAATAGGATTAAAAGGTTCCTCAAATAATTTATTATTATTATTTTAAATAATTCCATGACATTTTAAATTAGAAGAATAATTTTTAAAAATTATCTACTCTTTAAAACTATATTTTTTTCTAATTTTAAATATTATATAATTATTTTTAAAAAATCAAAGAAAAAAATACTTGAAAGACCTTTTAAATTTATTTTTAAAAACTAAAATGTATATTTTCGAGCTATTATTCTTAGGACTAAAAATATTCGTTTTTAAAATTTAGGGACCAAATGAAGTATTATCCAAAATTTATGGACTAAAAAAAAAAATGTAATTTCAAAAATAAAACTAAAATTGAGCGTCCAGAAAAGTTTCTCAGTGGAGCCCACCTAGCCGGTCTCTCTACCAGTCTTCCATTTCCATTTGCATCGACTCCATTCTCCAAACTTCCAGACCTCTTCCTCTCTCTCTCTCTCTCTCTCTCTCACATCTCTTCATCTCTCCAAATTGTAGACAGAACCCCCAAAATCTACCGTCTTCAACCCTACAGCTTCAAAATCTTCCTCCAATCCTTCGTCTCTGTTAACGATGTTGCAGTTCTTCTTTACCGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCCCCGCTCCGGAGCTTCAATCTCTTCGTCGAAACCATGGAGGAGATACTTCGGGAGTCAAGAACTTACACCAATCGGGTGTATCCTCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTATTCTTTGCAGCAGCAGGTAGATGATTTTATTTTTCTTTTTCTTTTCAAGATTTCCAACTTCGAGACTCCCATCTATCTGTATATATTCTTTGATTTTCTACTTTGTTCCATAAGATTTGCTTGAGTGTGATTCTGGTTGCCGGTTCGGTTCTTGCGGGAGTCTGTTGTAAATTGCTGAATGTAACATGTTAGAGGATGTGTTCTCAGTTAATTTTAGAAAAATAAAGAGATGATGTTCATGTTAATATGTGTACTGTGATGTTCTGTTTCTTTCCTTCCATTCAATTTGAGGATTTCGCAATTTGTTTTTCTGAATCCTGGGAGTGAAATTGTTTCTCTGGTCCTGGCTTCTCACACTTGCTATAGCTAGTAATTTGATGTTAACTTGATTGATTTATAGTTGGTGAATTGATTGCAAGCCTAAAATGACAGCTCTAGATACATAATTTTAGATACATGTACTCCCATTCATTGTATTTGATAGGGTTGAAGAAGAGCATCATTTTCAAATGTATATTTGTGTGTGTAATGTCTTCATTCTGAGATTTTAGGCATCTGAATAATAGGGTTATTCGATGCTTGTGAGTGTAAGATTATGGTTTCTATTACATAGCAACTGCAGGATTGATTCTTATGAAGTTGATTGGGAATATCAGATTGTTGTGTTTCTTTTAGGCCCAGATTGGCTTTTGGTTTTTGAAAATGAAGCTTTACTACTTCCTTTTATTTTTTTTTTTCCTTTTCGTTCCTTTTTTGTCTGTTTTTTAGAGGTGTTTTCAAAATGCCAAATTTTGATAACTAAAATGTAGATTTTAAAAGTGTATTTTTGCTTTTGGAATTTTACTGTGAATTCAAATATTCCTTAATAAAGATAAAAACTACCATAATGAAATGGTGGGAAGACAACACAATTTTCTAAAATCAGAATAGTTATTGAACGGGTTGTAGTTTTTGTTTTAGTTTTCTTACCAAGCTTTAGGGTTAGAATTGGAAGAGGAAGACAACAAGAATTCTAAAACTTCTGAGTTTCCAGGTTGAACTAGGACTTTAGATGGTTTTTTCCGAACAACCCAAGCCTTTATTACTAAGATCTTTGTCACTAAAATGTAACAGAATCCATACTCCATTCCAATACTGCCTCTGTTAGTTTATTGTTGAATTATTCTATACATCATCAGCTCTTTACAACACAGTTTTCTTTTTCTTAAGTTCAACACTTGTAGAATGAAACTCAAACCATCAACTTTTGAGATGGTAATCGGTGTCTTATCTACCGAGTTATGTTCAAATTGACCTTTACAACATAGACAGACCTTACAGGCTAATTATATCATACAAATTCATGTATGTTAGATAGAATTGCTTGTTTTGGTCTGTTGGAGGATCTCCTTAGAGTAGTACAGTGCGAGTATATATCGATATATGTATATCATTGTTATGAAAATGAAATTGGAAATTTGAGGAAGAATGAGGGTGTAGAAGATGATGAGAGTAATTTTTGATGCATGGTTGTCTAAGATGTTTGAACATCTTTATCTGATGCAAAAGGAGTATTACTATACACCTGTATATCCATCATTATTTATGATACATGACTTCCTCAAAAGAAACCGTCGGCATATAACTAGGTCTTGTTTGATGGTTATTTGGTTTTTTGTTTTTAATTTTTGAAAATTAAGCTTTGTGAGCACTATTCCTACTATTGTTTCTATATTTTTGTAATTTACTTTCTACTTATGTTTTGGAAAATCAAACTAAGTCTTGAAACTAAAAAAAAAAAACTAGAAATGCTAGTGTTTATTTAATGGTGGTGAAAACTATAATTGAGAAATTAGAAGTAAGCATGCATATCAAAAATAGAAAATTGAAAACAAATTGGGACCAAAGACGATGTATGTTTTTAAAGTATTGGTCTATTGGATATGCTCAAGATTAAGATGAGTTCTTGTTTGCTAGCAAACATTGGGTGGTTACCTAGAATCTAGAACATTAGAAAACAAGGTGGTATAGCAATTGTTCTTGTGATTCAGGGAATTTTTGGCTCTTTGTTTTACTTTCAATGTATTAAGCTGATTGGAGTCTCGCAAGAATACAGCCAAAAATACGTTGTTTATCCTGAAGAAGGTTACAATTTCATTACAAATTTGGTCACAATAATTCAAAAATTTTCAAATTAGTCACCCAATGCCAATATGACTGAATTCCATTGTTCTGTCTCAAAAACTTTTGCTTTTTATACCAAAGAGTTGAGGAGATTCAAATTACATGTCTTTTATTATTAACACATTCGTATATTAGTTGAATTATGTTTGCTTAAATAGAAGTTTTTTCGTGAAATGTTTTTGTTTGTATGGTTGAAGTTTGGCTATCTCATAAGAACTAAATTGAAACTAATATAAATCATAAAGAAATGATTGAAAGTTTTAAAACGGTAAGAATTAAGACAATATTTACTCCGGTGAAAACATAATAATCAATGGTAATGTAAAAAATGGGCTTTATTTGATTACCTTTGGTGTTTTGCATTTGTATTGTACTTACGCATGGGGTCCATTTCAAAATTTGATAAAAAGATGCAAATTAATTGACGAGTGGAGAATGTTCAATCTAATTGTGTTTGAAAATGAAGTTGTATCATTACCGTTATCGTTATTGGTACCATTGTTGTCGTTTCAAAAGAAAAATTATGGATTTTGATATCTTTAATATTATCATTATTGTTACCTTTACTTCTGAGGCTCAAGTGGTAACAACAACAACAGTAGTAAATATGACAAAATTCATAATTTTAAGTAAACGTAGTTAAAAAGCAAATGCAATCACATTTGCAATTCAAACTTATTACAATTGATTCAGCAATAGAATTTTAATACAAAAATTTCATTACGGTTTGATAAACGTGGCCTAAATTGGTATTGGAATCAGAATTTGTAATTTATTTAATCAAATAAAAACGCAAAAAGAAAGTAAAGGAAGGTGCTATGTTTTCTTTTCTCTCTTGAATTCGTTCTCTAAGTAGGAGTTTTGAACTTCTAACTTAAGATTATTTATATATTTTATGTCAATTAATTGAATTATGTAGTAGAATAAACATTACTCTTGCACTCAACAAATAAGATCCACACAAAAGATTGCTTCTGTAAATAATAATGATATTATTATTATGTTTAGAACATAACTGCTCCAGCCAAGTAGATATATGTCCACCATGGGTCAATTAAGATTTGATAAATTATTCATTATGGCATCATGGGCTCAAGAGCTTTGCCTCTATCCAATTCACACCTTCAAAAGAAAGTCATTGAACTGATTTTAGAGTTGGATTCCATATCAAGTGATGGTTTGTATTGTTGGTCACATTTTTCCATTATTACATTCTTTTTTCTTTGTCGCCAGTGAGCGGTGTAATTGATTCTACTACGTTTGGTGTAATTGATTCTACTACGTTTGGTTGTAAAAAAAGTTATTAAGATATTTAAGAGTTTGATTAATAAAGAATTTGAAAATAGAAATTTGAAACAGAAAACATGGATGTATTTCGTATTTTCATGTATGTGTTTGATGGCATATTTAGAAATTAAATTTTGATTTAAACCACCGTTTTAAATCATAAACCATAAAACTTAGTTATAATTACGTACTAAATATTAGTTTGATTATAAATTATTATTTATTAATTTATGAACTCGTTTTATGTTTTTTTTTTATTATAAATTATTATTTATTGATTTATGAACTCGTTTTATGTTTTTTTTAAAAAAAATATTTTATACTTTAAAATACATTACATAACATATCTTAAATTTAGAAAAATCAATTGAGGTTGTGACATGAATACTATATTTTTAAACGTTCTTATTTTTATTTAAATATAATTCTACCGTTTAAAATTTAAAGTTTGGATACACTAAAAATATAAAAATATTGGATGACCTATCATACGCATATTTATTAAATTCGATAAATTAGAAAATATAAAACAAAATCTGAATTGCCAACAAAAACATGCTCTCTTACATAGTAGCCATACCTACACTGGCTTAGACTCATTCTTTCTAAGCCCTATATTCCATTATCATATTATACATCCAACACTTGTTTGATCTACCTATTCAATTGAATATATACATGATTGAACTCATTCATTAAATAAATATCTTGTTATATACACTAACTTCTAATATAGGTGCATACTAAGATGTAATGTATCCAATTTTATGCAACCAACTTTAATTATTAAAAAGAAAACAAAAAATATTTTAAAAATGATGCACGAACAATTTGTAATATGTTAAATTATGATGGAATAGTATTATGCGGAGGAAAAGAAACTATGTTGGATAACTTGTTGAATTGTTTGAATATTAGAAAACTTCTAATATTGTAATAATATTGAAAAAATTTCATACTACTTTCGTTCGTTCGTTCATTTATATTGACATTTAAGAATTATGTGATATCTTTAAAATAAAGAAAAACTATTTTAAATGACAAAAATGTTGAAAATCTATCTTAAATTTTATAAATATTTTGATTACTTTTGCTATATTTGTATAACACCCTAAAATAAATGATGCAAACAGAGAAAGAAACGATCAAATTCAAACAAATTCCCAAAATAGAAAAAAGCCCTAATTCCCAACCACGAATCGCCCTCTTATTTCCCTCCAAACCAGGAACTTTCTTCTAAATATAGCTCTGCAAATTCAACAAGTTACCTTCCACCGAAGATCGCTCCAGTTTTCACCTATAAATCACATTCATCCCATCTCATTTTCCTCAGGCAGCAATTTCCAAAGCGAAGGCGTTTTTCGGTGATCCTTATCGTTCGATTCTACTCAACGAATAAACGCCACATAAACCCAGAAAAAAAATACACTAAAAAATCGCAATGGAGATGAAGAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCCGCCAGTCTTCTCCCGGCAATTGGCTCTCTCCTCGGCACCTCGTTGCTCTCCATCGCCGCCTACTACTTGCAATGA

mRNA sequence

ATGTTCATTGGATGCAAAGCTATAGACAGAACCCCCAAAATCTACCGTCTTCAACCCTACAGCTTCAAAATCTTCCTCCAATCCTTCGTCTCTGTTAACGATGTTGCAGTTCTTCTTTACCGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCCCCGCTCCGGAGCTTCAATCTCTTCGTCGAAACCATGGAGGAGATACTTCGGGAGTCAAGAACTTACACCAATCGGGTGTATCCTCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTATTCTTTGCAGCAGCAGATTTGCTTGAGTGTGATTCTGGTTGCCGGTTCGGTTCTTGCGGGAGTCTGTTGTAAATTGCTGAATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCCGCCAGTCTTCTCCCGGCAATTGGCTCTCTCCTCGGCACCTCGTTGCTCTCCATCGCCGCCTACTACTTGCAATGA

Coding sequence (CDS)

ATGTTCATTGGATGCAAAGCTATAGACAGAACCCCCAAAATCTACCGTCTTCAACCCTACAGCTTCAAAATCTTCCTCCAATCCTTCGTCTCTGTTAACGATGTTGCAGTTCTTCTTTACCGTGGCTTTCTCTGCAGTACCTTTGACTCTCTACATTCCCCCGCTCCGGAGCTTCAATCTCTTCGTCGAAACCATGGAGGAGATACTTCGGGAGTCAAGAACTTACACCAATCGGGTGTATCCTCGAGCTCGGCATGTTTGGTTAAGGGTTTTGGATTGTATTCTTTGCAGCAGCAGATTTGCTTGAGTGTGATTCTGGTTGCCGGTTCGGTTCTTGCGGGAGTCTGTTGTAAATTGCTGAATAAGATCGCCTGCGCCGTCCTCTTCGCTGCCGCAACCGTCAGCGCCGTCGTGGCTCACGATGAGGCGTTGGCTCCAGCACCTGGACCAAGCAGCGGCGCCGCCAGTCTTCTCCCGGCAATTGGCTCTCTCCTCGGCACCTCGTTGCTCTCCATCGCCGCCTACTACTTGCAATGA

Protein sequence

MFIGCKAIDRTPKIYRLQPYSFKIFLQSFVSVNDVAVLLYRGFLCSTFDSLHSPAPELQSLRRNHGGDTSGVKNLHQSGVSSSSACLVKGFGLYSLQQQICLSVILVAGSVLAGVCCKLLNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ

Homology

[Close]

BLAST of CcUC10G197520.1 vs. NCBI nr
Match: XP_022983304.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-15
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+ LPAIGS +G SLLS+AAYYLQ
Sbjct: 3   MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. NCBI nr
Match: KAG7018086.1 (hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 91.3 bits (225), Expect = 9.2e-15
Identity = 52/65 (80.00%), Postives = 58/65 (89.23%), Query Frame = 0


Query: 114 GVCCKLLNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIA 173
           G   + + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+ LPAIGS++G SLLS+A
Sbjct: 42  GDSSRRMKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSVIGASLLSVA 101

Query: 174 AYYLQ 179
           AYYLQ
Sbjct: 102 AYYLQ 106

[Close]

BLAST of CcUC10G197520.1 vs. NCBI nr
Match: XP_038905644.1 (arabinogalactan protein 23-like [Benincasa hispida])

HSP 1 Score: 89.4 bits (220), Expect = 3.5e-14
Identity = 50/59 (84.75%), Postives = 54/59 (91.53%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           + KIACAVLFAAATVSA VAHDEALAPAPGPSSGAA  LPAIGS++G SLLS+AAYYLQ
Sbjct: 3   MKKIACAVLFAAATVSAAVAHDEALAPAPGPSSGAAIGLPAIGSVIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. NCBI nr
Match: XP_022998512.1 (arabinogalactan peptide 23-like [Cucurbita maxima])

HSP 1 Score: 87.8 bits (216), Expect = 1.0e-13
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           +NKI CA+LFAAATVSAVVAHDEA APAPGP+SGA   LPAIGSL+G SLLS+AAYYLQ
Sbjct: 3   MNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. NCBI nr
Match: KAG7019275.1 (Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 86.7 bits (213), Expect = 2.3e-13
Identity = 47/59 (79.66%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           + KI CA+LFAAATVSAVVAHDEA APAPGP+SGA + LPAIGSL+G SLLS+AAYYLQ
Sbjct: 3   MKKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATAGLPAIGSLIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy Swiss-Prot
Match: Q8S2W4 (Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2)

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-09
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYL 178
           + KIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+G SL+S+ +YYL
Sbjct: 3   MKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL
Match: A0A6J1J6Y9 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.5e-15
Identity = 51/59 (86.44%), Postives = 55/59 (93.22%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           + KIACAVLFAAATVSAVVAHDEALAPAPGPSSGAA+ LPAIGS +G SLLS+AAYYLQ
Sbjct: 3   MKKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAAAGLPAIGSAIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL
Match: A0A6J1K873 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4 SV=1)

HSP 1 Score: 87.8 bits (216), Expect = 4.9e-14
Identity = 48/59 (81.36%), Postives = 53/59 (89.83%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           +NKI CA+LFAAATVSAVVAHDEA APAPGP+SGA   LPAIGSL+G SLLS+AAYYLQ
Sbjct: 3   MNKITCAILFAAATVSAVVAHDEAAAPAPGPTSGATVGLPAIGSLIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL
Match: A0A5A7U280 (Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold612G00270 PE=4 SV=1)

HSP 1 Score: 81.6 bits (200), Expect = 3.5e-12
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYL 178
           + KIACA+LFAAATVSA VA D+ALAPAPGPSSGAA  LPAIGSL+G SLLS AAYYL
Sbjct: 3   MKKIACAILFAAATVSAAVAEDKALAPAPGPSSGAAIGLPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL
Match: A0A0A0L9U8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1)

HSP 1 Score: 80.5 bits (197), Expect = 7.9e-12
Identity = 47/58 (81.03%), Postives = 51/58 (87.93%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYL 178
           + KIACAVLFAAATV+AVVA DEALAPAPGPSSGA   +PAIGSL+G SLLS AAYYL
Sbjct: 3   MKKIACAVLFAAATVTAVVAADEALAPAPGPSSGAGIGVPAIGSLVGASLLSFAAYYL 60

[Close]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL
Match: A0A6J1HQG2 (arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4 SV=1)

HSP 1 Score: 75.5 bits (184), Expect = 2.5e-10
Identity = 43/59 (72.88%), Postives = 49/59 (83.05%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYLQ 179
           + KI CAVLFAAATV+A VA +EA APAPGP+S A   LPAIGSL+G SLLS+AAYYLQ
Sbjct: 3   MKKITCAVLFAAATVTAAVAQNEASAPAPGPTSAATVGLPAIGSLIGASLLSVAAYYLQ 61

[Close]

BLAST of CcUC10G197520.1 vs. TAIR 10
Match: AT3G57690.1 (arabinogalactan protein 23 )

HSP 1 Score: 64.7 bits (156), Expect = 8.6e-11
Identity = 35/58 (60.34%), Postives = 49/58 (84.48%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGPSSGAASLLPAIGSLLGTSLLSIAAYYL 178
           + KIAC VLFAAA+++AV+A +E  APAPGP+S A++ LPA+GSL+G SL+S+ +YYL
Sbjct: 3   MKKIACGVLFAAASMTAVMAAEEVGAPAPGPASAASAALPALGSLVGASLVSLFSYYL 60

[Close]

BLAST of CcUC10G197520.1 vs. TAIR 10
Match: AT2G41905.1 (BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3G57690.1); Has 35333 Blast hits to 34131 proteins in 2444 species: Archae - 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants - 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI BLink). )

HSP 1 Score: 54.3 bits (129), Expect = 1.2e-07
Identity = 35/59 (59.32%), Postives = 48/59 (81.36%), Query Frame = 0


Query: 120 LNKIACAVLFAAATVSAVVAHDEALAPAPGP-SSGAASLLPAIGSLLGTSLLSIAAYYL 178
           + KIAC V+FAAA+++AV+A  E  APAPGP +SGA+  +PA+GSL+G SL+S+ AYYL
Sbjct: 3   MKKIACGVVFAAASMTAVMA-AEVGAPAPGPAASGASVAVPALGSLVGASLVSLFAYYL 60

The following BLAST results are available for this feature:

BLAST of CcUC10G197520.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022983304.1	9.2e-15	86.44	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7018086.1	9.2e-15	80.00	hypothetical protein SDJN02_19952, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_038905644.1	3.5e-14	84.75	arabinogalactan protein 23-like [Benincasa hispida]	[more]
XP_022998512.1	1.0e-13	81.36	arabinogalactan peptide 23-like [Cucurbita maxima]	[more]
KAG7019275.1	2.3e-13	79.66	Arabinogalactan peptide 23, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of CcUC10G197520.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8S2W4	1.2e-09	60.34	Arabinogalactan protein 23 OS=Arabidopsis thaliana OX=3702 GN=AGP23 PE=1 SV=2	[more]

BLAST of CcUC10G197520.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1J6Y9	4.5e-15	86.44	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111481924 PE=4...	[more]
A0A6J1K873	4.9e-14	81.36	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111493125 PE=4...	[more]
A0A5A7U280	3.5e-12	81.03	Arabinogalactan peptide 23 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff...	[more]
A0A0A0L9U8	7.9e-12	81.03	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G697910 PE=4 SV=1	[more]
A0A6J1HQG2	2.5e-10	72.88	arabinogalactan peptide 23-like OS=Cucurbita maxima OX=3661 GN=LOC111465151 PE=4...	[more]

BLAST of CcUC10G197520.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G57690.1	8.6e-11	60.34	arabinogalactan protein 23	[more]
AT2G41905.1	1.2e-07	59.32	BEST Arabidopsis thaliana protein match is: arabinogalactan protein 23 (TAIR:AT3...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR044702	Arabinogalactan protein 23/40	PANTHER	PTHR34672	POLLEN-SPECIFIC ARABINOGALACTA PROTEIN BAN102	coord: 119..178
None	No IPR available	PANTHER	PTHR34672:SF14	ARABINOGALACTAN PROTEIN 40	coord: 119..178

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G197520	CcUC10G197520	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G197520.1-exon	CcUC10G197520.1-exon-CicolChr10:24167110..24167134	exon
CcUC10G197520.1-exon	CcUC10G197520.1-exon-CicolChr10:24168716..24168987	exon
CcUC10G197520.1-exon	CcUC10G197520.1-exon-CicolChr10:24169086..24169151	exon
CcUC10G197520.1-exon	CcUC10G197520.1-exon-CicolChr10:24173875..24174048	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G197520.1-cds	CcUC10G197520.1-cds-CicolChr10:24167110..24167134	CDS
CcUC10G197520.1-cds	CcUC10G197520.1-cds-CicolChr10:24168716..24168987	CDS
CcUC10G197520.1-cds	CcUC10G197520.1-cds-CicolChr10:24169086..24169151	CDS
CcUC10G197520.1-cds	CcUC10G197520.1-cds-CicolChr10:24173875..24174048	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G197520.1	CcUC10G197520.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane