CcUC10G196910.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G196910.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic
Location	CicolChr10: 23443823 .. 23444817 (+)
Sequence length	654
RNA-Seq Expression	CcUC10G196910.1
Synteny	CcUC10G196910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAGTTTTTATAGAAGTATTCATAAATATAGTTTCCTTGTTCACTTTGATTTTGATAATTGTGATTATTGTTATCAATCATCAAGGATGTGTTTTTATTGGAATTGAAAAACATGAATTTGAAAGAAAAATATAATTTTATTCTATATTTTTTCTATTTTTTAAATGTGTTTGGTTTGGTGACATGTTTAGAATTTTAAACCAATTAAGCCATGTTTAAATTTCTTTTAATGCAGGAGACTCATTGTTGTAATTATAGATAAATCTAGATATTAATTGTCAAAGAAAGCATAACTCAATTGACATTTATATGTGTTAGCGCCACCTATTATTTGCAGGTGCGGTTGCTAAATCTACTCAATTTTCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGGTAGCAGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTCACCTTATATCATGAATCTAATAGCTTTGATAGGTATAATAATAGTACTATTTGGAGCTATTTTAGCTCTGCTAAAATAGATATTAAGAGAAGTTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGAGTCTTATCGGGCTGCTTTATTTCTTTTGATTACTCATGCTTATTCAAAAGCGTTGTTGTTTTTAGGATCTGGGTCCATTATTCAATCAATGGAATCTGTTGTTGGATATTCTCCTGATAAAAGTCAGAATATAGTTCTTATGGGTGGTTTAACAAAGCATGTGTCAATTACAAAAAATGCTTTCTTATTAGGTACCCTTTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTATTGATAGTTGGTTGTATTCACCGGTTTTCGCAATAATAGCCTGTTCCACAGCTGGATTAACAACATTTTATATGTTTCGCATCTACTTACTTTTGATGGACATTTAA

mRNA sequence

ATGAGTGCGGTTGCTAAATCTACTCAATTTTCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTCACCTTATATCATGAATCTAATAGCTTTGATAGGTATAATAATAGTACTATTTGGAGCTATTTTAGCTCTGCTAAAATAGATATTAAGAGAAGTTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGAGTCTTATCGGGCTGCTTTATTTCTTTTGATTACTCATGCTTATTCAAAAGCGTTGTTGTTTTTAGGATCTGGGTCCATTATTCAATCAATGGAATCTGTTGTTGGATATTCTCCTGATAAAAGTCAGAATATAGTTCTTATGGGTGGTTTAACAAAGCATGTGTCAATTACAAAAAATGCTTTCTTATTAGGTACCCTTTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTATTGATAGTTGGTTGTATTCACCGGTTTTCGCAATAATAGCCTGTTCCACAGCTGGATTAACAACATTTTATATGTTTCGCATCTACTTACTTTTGATGGACATTTAA

Coding sequence (CDS)

ATGAGTGCGGTTGCTAAATCTACTCAATTTTCTCTTCATGTATGGTTACCTGATGCTATGGAGGGTCCTACCCCCATTTCGGCTCTTATACATGCTGCTACGATGCGGGAATTTTTCTTGTCGCTCGGCTTCTTCCGCTTTTTCACCTTATATCATGAATCTAATAGCTTTGATAGGTATAATAATAGTACTATTTGGAGCTATTTTAGCTCTGCTAAAATAGATATTAAGAGAAGTTTAGCCTATTCTACAATGTCTCAATTGGGTTATATGATGTTAGCTTTGGGTATGGAGTCTTATCGGGCTGCTTTATTTCTTTTGATTACTCATGCTTATTCAAAAGCGTTGTTGTTTTTAGGATCTGGGTCCATTATTCAATCAATGGAATCTGTTGTTGGATATTCTCCTGATAAAAGTCAGAATATAGTTCTTATGGGTGGTTTAACAAAGCATGTGTCAATTACAAAAAATGCTTTCTTATTAGGTACCCTTTCTCTTTGTGGTATTCCACCCCTTGCCTGCTTTTGGTCCAAAGATGAAATTCTTATTGATAGTTGGTTGTATTCACCGGTTTTCGCAATAATAGCCTGTTCCACAGCTGGATTAACAACATTTTATATGTTTCGCATCTACTTACTTTTGATGGACATTTAA

Protein sequence

MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMREFFLSLGFFRFFTLYHESNSFDRYNNSTIWSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWSKDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMDI

Homology

[Close]

BLAST of CcUC10G196910.1 vs. NCBI nr
Match: YP_009752215.1 (NADH dehydrogenase subunit F [Linnaeosicyos amara] >QIT05625.1 NADH dehydrogenase subunit F [Linnaeosicyos amara])

HSP 1 Score: 302.4 bits (773), Expect = 3.2e-78
Identity = 167/221 (75.57%), Postives = 179/221 (81.00%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSF 60
           + AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++  F  F  + +  N  
Sbjct: 235 VGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFIKIPYMMNLI 294

Query: 61  DRYNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKA 120
                 T+   +  + A+ DIKR LAYSTMSQLGYMMLALGM SYRAALF LITHAYSKA
Sbjct: 295 ALIGIITVLFGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKA 354

Query: 121 LLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACF 180
           LLFLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACF
Sbjct: 355 LLFLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACF 414

Query: 181 WSKDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           WSKDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  +
Sbjct: 415 WSKDEILTDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 455

[Close]

BLAST of CcUC10G196910.1 vs. NCBI nr
Match: QZL38642.1 (NADH dehydrogenase subunit F [Citrullus naudinianus])

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. NCBI nr
Match: QHB76012.1 (NADH dehydrogenase subunit 5 [Cucumis melo subsp. melo])

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. NCBI nr
Match: YP_009420842.1 (NADH dehydrogenase subunit 5 [Citrullus colocynthis] >YP_009431690.1 NADH dehydrogenase subunit 5 [Citrullus rehmii] >ASP44512.1 NADH dehydrogenase subunit 5 [Citrullus colocynthis] >ASY96293.1 NADH dehydrogenase subunit 5 [Citrullus rehmii])

HSP 1 Score: 302.0 bits (772), Expect = 4.2e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMNLIAS 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. NCBI nr
Match: YP_009326037.1 (NADH dehydrogenase subunit 5 [Citrullus lanatus] >YP_009348079.1 NADH dehydrogenase subunit 5 [Citrullus mucosospermus] >YP_009431604.1 NADH dehydrogenase subunit 5 [Citrullus amarus] >APW82510.1 NADH dehydrogenase subunit 5 [Citrullus lanatus subsp. vulgaris] >APD52529.1 NADH dehydrogenase subunit 5 [Citrullus lanatus] >APW82595.1 NADH dehydrogenase subunit 5 [Citrullus lanatus subsp. vulgaris] >APW82765.1 NADH dehydrogenase subunit 5 [Citrullus mucosospermus] >APW82850.1 NADH dehydrogenase subunit 5 [Citrullus mucosospermus])

HSP 1 Score: 301.6 bits (771), Expect = 5.5e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot
Match: Q2QD43 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=3659 GN=ndhF PE=3 SV=1)

HSP 1 Score: 300.1 bits (767), Expect = 2.1e-80
Identity = 166/219 (75.80%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIAIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SY+AALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYQAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCG+PPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGVPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot
Match: Q0ZIX1 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera OX=29760 GN=ndhF PE=3 SV=1)

HSP 1 Score: 295.4 bits (755), Expect = 5.1e-79
Identity = 163/221 (73.76%), Postives = 177/221 (80.09%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSF 60
           + AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++  F  F  + +  N  
Sbjct: 237 VGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFIVIPYIMNLI 296

Query: 61  DRYNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKA 120
                 TI   +  + A+ DIK+SLAYSTMSQLGY MLALGM SYRAALF LITHAYSKA
Sbjct: 297 SLIGIITILLGATLALAQKDIKKSLAYSTMSQLGYTMLALGMGSYRAALFHLITHAYSKA 356

Query: 121 LLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACF 180
           LLFLGSGSII SME++VGYSPDKSQN+VLMGGLTKHV ITKN FLLGTLSLCGIPPLACF
Sbjct: 357 LLFLGSGSIIHSMEAIVGYSPDKSQNMVLMGGLTKHVPITKNTFLLGTLSLCGIPPLACF 416

Query: 181 WSKDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           WSKDEIL DSWLYSP+FAIIAC TAGLT FYMFRIYLL  +
Sbjct: 417 WSKDEILNDSWLYSPIFAIIACLTAGLTAFYMFRIYLLTFE 457

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot
Match: B1NWJ6 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=3983 GN=ndhF PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-78
Identity = 161/219 (73.52%), Postives = 175/219 (79.91%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATM--REFFLSLGFFRFFTLY-HESNSFDR 62
           A+AKS QF LHVWLPDAMEGPTPISALIHAATM     FL    F  F +     N    
Sbjct: 237 AIAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFVIIPFIMNLIAL 296

Query: 63  YNNSTIW--SYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T++  +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVFLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SME+++GYSPDKSQN+VLMGGLTKH+ ITK AFLLGTLSLCGIPP ACFWS
Sbjct: 357 FLGSGSIIHSMEAILGYSPDKSQNMVLMGGLTKHIPITKTAFLLGTLSLCGIPPFACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIAC TAGLT FYMFR+YLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACFTAGLTAFYMFRVYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot
Match: B0Z4S2 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera argillicola OX=3940 GN=ndhF PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-78
Identity = 163/219 (74.43%), Postives = 174/219 (79.45%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATM--REFFLSLGFFRFFTLY-HESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     FL       F +  +  N    
Sbjct: 238 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVITPYIMNLISL 297

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 298 IGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 357

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMES+VGYSPDKSQN+VLMGGL KHV ITK AFL+GTLSLCGIPPLACFWS
Sbjct: 358 FLGSGSIIHSMESIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWS 417

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAG T FYMFR+YLL  D
Sbjct: 418 KDEILNDSWLYSPIFAIIACSTAGFTAFYMFRVYLLTFD 456

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot
Match: B0Z506 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera biennis OX=3942 GN=ndhF PE=3 SV=1)

HSP 1 Score: 293.9 bits (751), Expect = 1.5e-78
Identity = 163/219 (74.43%), Postives = 174/219 (79.45%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATM--REFFLSLGFFRFFTLY-HESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     FL       F +  +  N    
Sbjct: 238 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVITPYIMNLISL 297

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 298 IGIITVLLGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 357

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMES+VGYSPDKSQN+VLMGGL KHV ITK AFL+GTLSLCGIPPLACFWS
Sbjct: 358 FLGSGSIIHSMESIVGYSPDKSQNMVLMGGLKKHVPITKTAFLVGTLSLCGIPPLACFWS 417

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAG T FYMFR+YLL  D
Sbjct: 418 KDEILNDSWLYSPIFAIIACSTAGFTAFYMFRVYLLTFD 456

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL
Match: A0A6H0EUV7 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Linnaeosicyos amara OX=386243 GN=ndhF PE=3 SV=1)

HSP 1 Score: 302.4 bits (773), Expect = 1.6e-78
Identity = 167/221 (75.57%), Postives = 179/221 (81.00%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSF 60
           + AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++  F  F  + +  N  
Sbjct: 235 VGAVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLFPLFIKIPYMMNLI 294

Query: 61  DRYNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKA 120
                 T+   +  + A+ DIKR LAYSTMSQLGYMMLALGM SYRAALF LITHAYSKA
Sbjct: 295 ALIGIITVLFGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKA 354

Query: 121 LLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACF 180
           LLFLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACF
Sbjct: 355 LLFLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACF 414

Query: 181 WSKDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           WSKDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  +
Sbjct: 415 WSKDEILTDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFE 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL
Match: A0A6B9M317 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=ndhF PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.0e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFIVIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL
Match: A0A249RXF3 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrullus rehmii OX=260675 GN=ndhF PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.0e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMNLIAS 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL
Match: A0A343F2D2 (NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrullus colocynthis OX=252529 GN=ndhF PE=3 SV=1)

HSP 1 Score: 302.0 bits (772), Expect = 2.0e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMNLIAS 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL
Match: A0A1P8LEA9 (NAD(P)H dehydrogenase subunit 5 OS=Citrullus mucosospermus OX=519315 GN=ndhF PE=3 SV=1)

HSP 1 Score: 301.6 bits (771), Expect = 2.7e-78
Identity = 168/219 (76.71%), Postives = 178/219 (81.28%), Query Frame = 0


Query: 3   AVAKSTQFSLHVWLPDAMEGPTPISALIHAATMRE---FFLSLGFFRFFTLYHESNSFDR 62
           AVAKS QF LHVWLPDAMEGPTPISALIHAATM     F ++     F  + +  N    
Sbjct: 237 AVAKSAQFPLHVWLPDAMEGPTPISALIHAATMVAAGIFLVARLLPLFVVIPYIMNLIAL 296

Query: 63  YNNSTI--WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALL 122
               T+   +  + A+ DIKRSLAYSTMSQLGYMMLALGM SYRAALF LITHAYSKALL
Sbjct: 297 IGIITVLFGATLALAQKDIKRSLAYSTMSQLGYMMLALGMGSYRAALFHLITHAYSKALL 356

Query: 123 FLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLACFWS 182
           FLGSGSII SMESVVGYSPDKSQN+VLMGGLTKHV ITKNAFLLGTLSLCGIPPLACFWS
Sbjct: 357 FLGSGSIIHSMESVVGYSPDKSQNMVLMGGLTKHVPITKNAFLLGTLSLCGIPPLACFWS 416

Query: 183 KDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           KDEIL DSWLYSP+FAIIACSTAGLT FYMFRIYLL  D
Sbjct: 417 KDEILNDSWLYSPIFAIIACSTAGLTAFYMFRIYLLTFD 455

[Close]

BLAST of CcUC10G196910.1 vs. TAIR 10
Match: ATCG01010.1 (NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein )

HSP 1 Score: 283.5 bits (724), Expect = 1.4e-76
Identity = 160/223 (71.75%), Postives = 176/223 (78.92%), Query Frame = 0


Query: 4   VAKSTQFSLHVWLPDAMEGPTPISALIHAATMREFFLSLGFF---RFFTLYHESNSFDRY 63
           +AKS QF LHVWLPDAMEGPTPISALIHAATM    ++ G F   R   L+    S   Y
Sbjct: 238 IAKSAQFPLHVWLPDAMEGPTPISALIHAATM----VAAGIFLVARLLPLFIVIPSI-MY 297

Query: 64  NNSTI-------WSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYS 123
             S I        +  + A+ DIKR LAYSTMSQLGYMMLALGM SYR+ALF LITHAYS
Sbjct: 298 IISLIGIITVLLGATLALAQKDIKRGLAYSTMSQLGYMMLALGMGSYRSALFHLITHAYS 357

Query: 124 KALLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPPLA 183
           KALLFLGSGSII SME++VGYSPDKSQN++LMGGLTKHV ITK AFL+GTLSLCGIPPLA
Sbjct: 358 KALLFLGSGSIIHSMEAIVGYSPDKSQNMILMGGLTKHVPITKTAFLIGTLSLCGIPPLA 417

Query: 184 CFWSKDEILIDSWLYSPVFAIIACSTAGLTTFYMFRIYLLLMD 217
           CFWSKDEIL DS L+SP+FAIIACSTAGLT FYMFRIYLL  +
Sbjct: 418 CFWSKDEILNDSLLFSPIFAIIACSTAGLTAFYMFRIYLLTFE 455

[Close]

BLAST of CcUC10G196910.1 vs. TAIR 10
Match: ATMG00060.1 (NADH dehydrogenase subunit 5C )

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-27
Identity = 89/226 (39.38%), Postives = 125/226 (55.31%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMREFFLSLGFF---RFFTLY-HESNS 60
           + AV KS Q   H W PDAMEGPTP+SA IHAATM    ++ G F   R   L+ +   +
Sbjct: 227 IGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATM----VTAGVFMIARCSPLFEYPPTA 286

Query: 61  FDRYNNSTIWSYFSSA-----KIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHA 120
                ++   + F +A     + D+KR +AYST SQLGYM+ A G+ +Y  ++F L+ HA
Sbjct: 287 LIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHA 346

Query: 121 YSKALLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPP 180
           + KALLFL +GS+I +M           Q++  MGGL     +T    L+G+LSL G P 
Sbjct: 347 FFKALLFLSAGSVIHAMSD--------EQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPF 406

Query: 181 LACFWSKD---EILIDSWLYSPVFAIIACSTAGL-TTFYMFRIYLL 214
           L  F+SKD   E+    +  S  FA    S + L T++Y FR+  L
Sbjct: 407 LTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRLLFL 440

[Close]

BLAST of CcUC10G196910.1 vs. TAIR 10
Match: ATMG00513.1 (NADH dehydrogenase 5A )

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-27
Identity = 89/226 (39.38%), Postives = 125/226 (55.31%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMREFFLSLGFF---RFFTLY-HESNS 60
           + AV KS Q   H W PDAMEGPTP+SA IHAATM    ++ G F   R   L+ +   +
Sbjct: 227 IGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATM----VTAGVFMIARCSPLFEYPPTA 286

Query: 61  FDRYNNSTIWSYFSSA-----KIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHA 120
                ++   + F +A     + D+KR +AYST SQLGYM+ A G+ +Y  ++F L+ HA
Sbjct: 287 LIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHA 346

Query: 121 YSKALLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPP 180
           + KALLFL +GS+I +M           Q++  MGGL     +T    L+G+LSL G P 
Sbjct: 347 FFKALLFLSAGSVIHAMSD--------EQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPF 406

Query: 181 LACFWSKD---EILIDSWLYSPVFAIIACSTAGL-TTFYMFRIYLL 214
           L  F+SKD   E+    +  S  FA    S + L T++Y FR+  L
Sbjct: 407 LTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRLLFL 440

[Close]

BLAST of CcUC10G196910.1 vs. TAIR 10
Match: ATMG00665.1 (NADH dehydrogenase 5B )

HSP 1 Score: 120.2 bits (300), Expect = 2.1e-27
Identity = 89/226 (39.38%), Postives = 125/226 (55.31%), Query Frame = 0


Query: 1   MSAVAKSTQFSLHVWLPDAMEGPTPISALIHAATMREFFLSLGFF---RFFTLY-HESNS 60
           + AV KS Q   H W PDAMEGPTP+SA IHAATM    ++ G F   R   L+ +   +
Sbjct: 227 IGAVGKSAQIGSHTWSPDAMEGPTPVSASIHAATM----VTAGVFMIARCSPLFEYPPTA 286

Query: 61  FDRYNNSTIWSYFSSA-----KIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHA 120
                ++   + F +A     + D+KR +AYST SQLGYM+ A G+ +Y  ++F L+ HA
Sbjct: 287 LIVITSAGATTSFLAATTGILQNDLKRVIAYSTCSQLGYMIFACGISNYSVSVFHLMNHA 346

Query: 121 YSKALLFLGSGSIIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLCGIPP 180
           + KALLFL +GS+I +M           Q++  MGGL     +T    L+G+LSL G P 
Sbjct: 347 FFKALLFLSAGSVIHAMSD--------EQDMRKMGGLASSFPLTYAMMLIGSLSLIGFPF 406

Query: 181 LACFWSKD---EILIDSWLYSPVFAIIACSTAGL-TTFYMFRIYLL 214
           L  F+SKD   E+    +  S  FA    S + L T++Y FR+  L
Sbjct: 407 LTGFYSKDVILELAYTKYTISGNFAFWLGSVSVLFTSYYSFRLLFL 440

[Close]

BLAST of CcUC10G196910.1 vs. TAIR 10
Match: ATCG00890.1 (NADH-Ubiquinone/plastoquinone (complex I) protein )

HSP 1 Score: 47.4 bits (111), Expect = 1.7e-05
Identity = 59/218 (27.06%), Postives = 95/218 (43.58%), Query Frame = 0


Query: 13  HVWLPDAMEG-PTPISALIHAATMREFFLSLGFFRFFTL--YHESNSFD------RYNNS 72
           H W PD  EG PTP+ A +   +  +   S    R F +  Y  SN +          + 
Sbjct: 127 HQWTPDVYEGSPTPVVAFLSVTS--KVAASASATRIFDIPFYFSSNEWHLLLEILAILSM 186

Query: 73  TIWSYFSSAKIDIKRSLAYSTMSQLGYMMLALGMESYRAALFLLITHAYSKALLFLGSGS 132
              +  +  +  +KR LAYS++ Q+GY+++ + +         +IT+      + LG+ +
Sbjct: 187 IFGNLIAITQTSMKRMLAYSSIGQIGYVIIGIIVGDSNGGYASMITYMLFYIAMNLGTFA 246

Query: 133 IIQSMESVVGYSPDKSQNIVLMGGLTKHVSITKNAFLLGTLSLC-----GIPPLACFWSK 192
            I       G     + NI    GL      TK+ FL  +L+LC     G+PPLA F+ K
Sbjct: 247 CIILFGLRTG-----TDNIRDYAGL-----YTKDPFLALSLALCLLSLGGLPPLAGFFGK 306

Query: 193 DEILIDSWLYSPVFAI-IACSTAGLTTFYMFRIYLLLM 216
             +    W     F + I   T+ L+ +Y  +I  LLM
Sbjct: 307 LHLFWCGWQAGLYFLVSIGLLTSVLSIYYYLKIIKLLM 332

The following BLAST results are available for this feature:

BLAST of CcUC10G196910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
YP_009752215.1	3.2e-78	75.57	NADH dehydrogenase subunit F [Linnaeosicyos amara] >QIT05625.1 NADH dehydrogenas...	[more]
QZL38642.1	4.2e-78	76.71	NADH dehydrogenase subunit F [Citrullus naudinianus]	[more]
QHB76012.1	4.2e-78	76.71	NADH dehydrogenase subunit 5 [Cucumis melo subsp. melo]	[more]
YP_009420842.1	4.2e-78	76.71	NADH dehydrogenase subunit 5 [Citrullus colocynthis] >YP_009431690.1 NADH dehydr...	[more]
YP_009326037.1	5.5e-78	76.71	NADH dehydrogenase subunit 5 [Citrullus lanatus] >YP_009348079.1 NADH dehydrogen...	[more]

BLAST of CcUC10G196910.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q2QD43	2.1e-80	75.80	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis sativus OX=36...	[more]
Q0ZIX1	5.1e-79	73.76	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Vitis vinifera OX=297...	[more]
B1NWJ6	1.5e-78	73.52	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Manihot esculenta OX=...	[more]
B0Z4S2	1.5e-78	74.43	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera argillicola...	[more]
B0Z506	1.5e-78	74.43	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Oenothera biennis OX=...	[more]

BLAST of CcUC10G196910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6H0EUV7	1.6e-78	75.57	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Linnaeosicyos amara O...	[more]
A0A6B9M317	2.0e-78	76.71	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Cucumis melo subsp. m...	[more]
A0A249RXF3	2.0e-78	76.71	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrullus rehmii OX=2...	[more]
A0A343F2D2	2.0e-78	76.71	NAD(P)H-quinone oxidoreductase subunit 5, chloroplastic OS=Citrullus colocynthis...	[more]
A0A1P8LEA9	2.7e-78	76.71	NAD(P)H dehydrogenase subunit 5 OS=Citrullus mucosospermus OX=519315 GN=ndhF PE=...	[more]

BLAST of CcUC10G196910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
ATCG01010.1	1.4e-76	71.75	NADH-Ubiquinone oxidoreductase (complex I), chain 5 protein	[more]
ATMG00060.1	2.1e-27	39.38	NADH dehydrogenase subunit 5C	[more]
ATMG00513.1	2.1e-27	39.38	NADH dehydrogenase 5A	[more]
ATMG00665.1	2.1e-27	39.38	NADH dehydrogenase 5B	[more]
ATCG00890.1	1.7e-05	27.06	NADH-Ubiquinone/plastoquinone (complex I) protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01434	NADHDHGNASE5	coord: 2..23 score: 72.9 coord: 24..50 score: 41.72 coord: 87..99 score: 68.54 coord: 196..215 score: 48.51
None	No IPR available	PANTHER	PTHR42829	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5	coord: 2..215
None	No IPR available	PANTHER	PTHR42829:SF2	NADH-UBIQUINONE OXIDOREDUCTASE CHAIN 5	coord: 2..215
IPR018393	NADH-plastoquinone oxidoreductase, chain 5 subgroup	PRINTS	PR01435	NPOXDRDTASE5	coord: 138..160 score: 83.55 coord: 195..217 score: 69.39
IPR001750	NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit	PFAM	PF00361	Proton_antipo_M	coord: 2..203 e-value: 2.1E-49 score: 168.3

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G196910	CcUC10G196910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196910.1-exon	CcUC10G196910.1-exon-CicolChr10:23443823..23443826	exon
CcUC10G196910.1-exon	CcUC10G196910.1-exon-CicolChr10:23444161..23444261	exon
CcUC10G196910.1-exon	CcUC10G196910.1-exon-CicolChr10:23444269..23444817	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196910.1-cds	CcUC10G196910.1-cds-CicolChr10:23443823..23443826	CDS
CcUC10G196910.1-cds	CcUC10G196910.1-cds-CicolChr10:23444161..23444261	CDS
CcUC10G196910.1-cds	CcUC10G196910.1-cds-CicolChr10:23444269..23444817	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G196910.1	CcUC10G196910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042773	ATP synthesis coupled electron transport
cellular_component	GO:0009535	chloroplast thylakoid membrane
cellular_component	GO:0016021	integral component of membrane
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0048038	quinone binding