CcUC10G196530.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G196530.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 22806240 .. 22807969 (+)
Sequence length	339
RNA-Seq Expression	CcUC10G196530.1
Synteny	CcUC10G196530.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGACAAATGAAGAGGAAGGAGGGTAGAAAGCAAGTTGTCGGCAGCTTGCTACCAGTGGTTGCTGACGATCACCGACAATTGCTGATGAGATGTAGGACAATAAGGTGAAGGGGAGGAAGGGAAGAAATAATACTAAGTTTTAAAATTGACGAAAGGACTAAAAATGGAACCAAATGCAAAGTTGAGGGGTTGAAATATTAAGGCCCCATTTTGTAACCATTTTGTTTTTTGTTTTTGTTTTTGAAAATTAAGCTTATAGACACTTCTTCCCCTTCAATTTTATTCTTTTGTTATCTACTTTTTACCAATAGCTTAAAAAGCTAAGGCAAAATTTGAAAACTAAAATAAATAACTTTTAAAAACTTGCTTTTGTTTTTAGAATTTGGCAAAAAATTCAACTATCCTATTTAAAAGAGATGTAAATTAATGTAAACATAGAAAGGAAATAGGCCTTAATTTTTAAAAACAAAAACAAAAAATAAAATAATTACCAAATGGGCCTAAGTTTTATAATTTAAGAACTTTCATGTAACCTAACCCAAATATTAGTTGGCAAGAGTATAATTTCTTTTTACATATTTTTAAAAATTATGTTTTGTTTCAATTTTTTTTTCGTTTTCTAAATTTTGATTAAGACTTAGAAAGCACTTTTTTTTAACGTGATTAATTATAACTATATGACATGATTGTTTTAAATTTCAATAAAAATTAAATGAATGAAACATCAAGTATTTTTTTAAATTTTTTTTATACAATACGTGGGTTGGGATTCAACCTCATATGTTCATGTTGGCAATTAAAGATGAAGGTTAAAATACTAGTTTAACCACTAAAATTTCAAGTTTATGTCAAGTAGATTAATGAAAGAACTTTAAAACGTGTCAATAGGTATTTGAACATTTAAATTTGTGTCAATAGGCCTTTATTTTTTTTTTAATAAAGAATAATTTTTAAAAAGGATTTAACAAAAAAATGTTTAATAAATTCTTAAAAATTTCAATTTTGGTGTCTAATAAGCTAAGAGATTTTTAATTTTATGTCGAATACCTCCCTCACTTATATAACATTCTTTAAAATTTTTACCTAGAAACTTTAAAACTTATCGTCGTCCTATTATACACAAATAGATTTGTTAATTTTTTTAATAAAAAAATAAAATATATTAAATAACTTATCAATTGAAAATTTAAAGGTTAATCCATTCTTTTTAAAAATTTTATAAGAGCTTGACGTAAACTTAAAAGTTGACCATATTAAAATGGTAAATCATAATAAATCAAATTAACAGTGATAAAGAAAATAAATAAATAAAATCAATGCCAATTACCAATTTACCACCAACAAATTGCAAAACTAATTAAAAATTTCAAACATTGGCCTCAACACCAACCTCATGGGGCCTTTTAGAATGTTTTTTAAAGACAAAAATCCCACCAAACCAAGCAACAGAATTAACAATCTTAGCAATTCCAATTGCCACCGTAATGTAATACAGGCACCAGCCGGAAATGTCTGCCGGACCCAATTCCGCCGACGTCAACCACTTGCTTTCCGCCACAACCACTAGCGCCTCCGCCTCATCCCTCAACCGCCACCACCACAGTCCGCCCAAGCTCACCGCCGTAGCTGCCGTCTCAAACCACTTCTCTTTCCGAGATTCCCCGAATACGGTGTCGTCCACCACCGGCTTTACCACCACCCTCGTCCAGTGCACCACCGCCTCATGA

mRNA sequence

ATGGGACAAATGAAGAGGAAGGAGGGTAGAAAGCAAGTTGTCGGCAGCTTGCTACCAGTGGTTGCTGACGATCACCGACAATTGCTGATGAGATGTAGGACAATAAGGCACCAGCCGGAAATGTCTGCCGGACCCAATTCCGCCGACGTCAACCACTTGCTTTCCGCCACAACCACTAGCGCCTCCGCCTCATCCCTCAACCGCCACCACCACAGTCCGCCCAAGCTCACCGCCGTAGCTGCCGTCTCAAACCACTTCTCTTTCCGAGATTCCCCGAATACGGTGTCGTCCACCACCGGCTTTACCACCACCCTCGTCCAGTGCACCACCGCCTCATGA

Coding sequence (CDS)

ATGGGACAAATGAAGAGGAAGGAGGGTAGAAAGCAAGTTGTCGGCAGCTTGCTACCAGTGGTTGCTGACGATCACCGACAATTGCTGATGAGATGTAGGACAATAAGGCACCAGCCGGAAATGTCTGCCGGACCCAATTCCGCCGACGTCAACCACTTGCTTTCCGCCACAACCACTAGCGCCTCCGCCTCATCCCTCAACCGCCACCACCACAGTCCGCCCAAGCTCACCGCCGTAGCTGCCGTCTCAAACCACTTCTCTTTCCGAGATTCCCCGAATACGGTGTCGTCCACCACCGGCTTTACCACCACCCTCGTCCAGTGCACCACCGCCTCATGA

Protein sequence

MGQMKRKEGRKQVVGSLLPVVADDHRQLLMRCRTIRHQPEMSAGPNSADVNHLLSATTTSASASSLNRHHHSPPKLTAVAAVSNHFSFRDSPNTVSSTTGFTTTLVQCTTAS

Homology

[Close]

BLAST of CcUC10G196530.1 vs. ExPASy TrEMBL
Match: A0A0A0KTG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003710 PE=4 SV=1)

HSP 1 Score: 118.2 bits (295), Expect = 2.1e-23
Identity = 65/72 (90.28%), Postives = 65/72 (90.28%), Query Frame = 0


Query: 41  MSAGPNSADVNHLLSATTTSASASSLNRHHHSPPKLTAVAAVSNHFSFRDSPNTVSSTTG 100
           MSA PNSADVNHLLSATTTS SASSLNRHHHSPPKLTAVAAVSNHFS R SP  VSSTTG
Sbjct: 1   MSAQPNSADVNHLLSATTTSTSASSLNRHHHSPPKLTAVAAVSNHFSVRGSPYMVSSTTG 60

Query: 101 FTTTLVQCTTAS 113
           FTT LVQCTTAS
Sbjct: 61  FTTALVQCTTAS 72

The following BLAST results are available for this feature:

BLAST of CcUC10G196530.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G196530.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC10G196530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KTG5	2.1e-23	90.28	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G003710 PE=4 SV=1	[more]

BLAST of CcUC10G196530.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G196530	CcUC10G196530	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196530.1-exon	CcUC10G196530.1-exon-CicolChr10:22806240..22806346	exon
CcUC10G196530.1-exon	CcUC10G196530.1-exon-CicolChr10:22807738..22807969	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196530.1-cds	CcUC10G196530.1-cds-CicolChr10:22806240..22806346	CDS
CcUC10G196530.1-cds	CcUC10G196530.1-cds-CicolChr10:22807738..22807969	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G196530.1	CcUC10G196530.1-protein	polypeptide