CcUC10G196470.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G196470.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 22738732 .. 22739013 (+)
Sequence length	282
RNA-Seq Expression	CcUC10G196470.1
Synteny	CcUC10G196470.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCAAAGAAGAAAAAATTAACATAA

mRNA sequence

ATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCAAAGAAGAAAAAATTAACATAA

Coding sequence (CDS)

ATGAACGCTCAAGCTCAAGAAGATATTCCTCCAAGGCCTCGGGTTAAGGTCTCATTTTGCTTAGGGTCAGAGACACATTTGATCAATACAGCTAATCAAGGCACTCTCTCAGAGCAGTTGATTTCTATGAAAGAAGAGAGCATGGTCATTTTGAAGGAATACATAACCAAACATAATGTTCCTATCGATGTCCCGGATGAACTAGTTGAAGAAGCTTCTGAGGACGAGGATCAAATCACTGAAAAGCCTTATGTGAAGTCAAAGAAGAAAAAATTAACATAA

Protein sequence

MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNVPIDVPDELVEEASEDEDQITEKPYVKSKKKKLT

Homology

[Close]

BLAST of CcUC10G196470.1 vs. NCBI nr
Match: TYK29223.1 (uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CcUC10G196470.1 vs. NCBI nr
Match: XP_008443784.1 (PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 67 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of CcUC10G196470.1 vs. NCBI nr
Match: KAA0035148.1 (uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa])

HSP 1 Score: 152.1 bits (383), Expect = 2.3e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1   MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
           M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 19  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 78

Query: 61  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 79  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of CcUC10G196470.1 vs. NCBI nr
Match: XP_011660264.1 (uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharacterized protein LOC105436354 [Cucumis sativus] >KGN66757.1 hypothetical protein Csa_007293 [Cucumis sativus])

HSP 1 Score: 150.2 bits (378), Expect = 8.7e-33
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVS CLGSETHL+NTAN+GTLSEQL SMKE+SM ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CcUC10G196470.1 vs. NCBI nr
Match: KAG7036645.1 (hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 136.7 bits (343), Expect = 1.0e-28
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1   MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
           M+AQAQE I   PRVK SF LGSE HL+NTAN+GTLSEQLISMKEESM ILKEYITKHNV
Sbjct: 104 MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 163

Query: 61  PIDVPDELVEEASE-DEDQITEKPYVKSKKKKLT 94
           P DVPDEL+EEASE D+D+ TEKP VKSKK KLT
Sbjct: 164 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 197

[Close]

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL
Match: A0A5A7SX16 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold57G002390 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1   MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
           M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 19  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 78

Query: 61  PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
           P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 79  PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 111

[Close]

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL
Match: A0A5D3DZN8 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1228G00090 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 60

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL
Match: A0A1S3B8U1 (uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=4 SV=1)

HSP 1 Score: 152.1 bits (383), Expect = 1.1e-33
Identity = 77/93 (82.80%), Postives = 86/93 (92.47%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVSFCLGSE HL+NTAN+GTLSEQLISMKE+SM ILKEYITKHNV
Sbjct: 7  MDAPAEEDIPLRPRVKVSFCLGSEIHLVNTANKGTLSEQLISMKEDSMAILKEYITKHNV 66

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 67 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 99

[Close]

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL
Match: A0A0A0M0V3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1)

HSP 1 Score: 150.2 bits (378), Expect = 4.2e-33
Identity = 76/93 (81.72%), Postives = 85/93 (91.40%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+A A+EDIP RPRVKVS CLGSETHL+NTAN+GTLSEQL SMKE+SM ILKEYITKHNV
Sbjct: 1  MDAPAEEDIPLRPRVKVSLCLGSETHLVNTANKGTLSEQLTSMKEDSMAILKEYITKHNV 60

Query: 61 PIDVPDELVEEASEDEDQITEKPYVKSKKKKLT 94
          P DVPDELVEEASED+D+ITEKP VK+KK K+T
Sbjct: 61 PNDVPDELVEEASEDDDEITEKPQVKAKKTKVT 93

[Close]

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL
Match: A0A6J1G9M3 (uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC111452065 PE=4 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 4.8e-29
Identity = 75/94 (79.79%), Postives = 81/94 (86.17%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M+AQAQE I   PRVK SF LGSE HL+NTAN+GTLSEQLISMKEESM ILKEYITKHNV
Sbjct: 1  MDAQAQEVISRSPRVKASFRLGSEKHLVNTANKGTLSEQLISMKEESMAILKEYITKHNV 60

Query: 61 PIDVPDELVEEASE-DEDQITEKPYVKSKKKKLT 94
          P DVPDEL+EEASE D+D+ TEKP VKSKK KLT
Sbjct: 61 PNDVPDELLEEASEDDDDETTEKPQVKSKKTKLT 94

[Close]

BLAST of CcUC10G196470.1 vs. TAIR 10
Match: AT1G47820.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M  ++   +P +  VKV F LG+E++ I++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 61 P-IDVPDELV---EEASEDEDQITEKPYVKSKKKKL 93
          P  DVPD+++   EE  +D+      P    KK K+
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

[Close]

BLAST of CcUC10G196470.1 vs. TAIR 10
Match: AT1G47820.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT1G47813.1); Has 29 Blast hits to 29 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 29; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 68.6 bits (166), Expect = 3.1e-12
Identity = 41/96 (42.71%), Postives = 61/96 (63.54%), Query Frame = 0


Query: 1  MNAQAQEDIPPRPRVKVSFCLGSETHLINTANQGTLSEQLISMKEESMVILKEYITKHNV 60
          M  ++   +P +  VKV F LG+E++ I++    T+ +QL+SMKEESM ILK++ITKHNV
Sbjct: 1  MEIESHVSVPGKNLVKVEFKLGTESYTIDSIKGDTVLDQLVSMKEESMKILKDFITKHNV 60

Query: 61 P-IDVPDELV---EEASEDEDQITEKPYVKSKKKKL 93
          P  DVPD+++   EE  +D+      P    KK K+
Sbjct: 61 PDDDVPDQILSDDEEGDDDDASPVICPVKPPKKTKI 96

The following BLAST results are available for this feature:

BLAST of CcUC10G196470.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK29223.1	2.3e-33	82.80	uncharacterized protein E5676_scaffold1228G00090 [Cucumis melo var. makuwa]	[more]
XP_008443784.1	2.3e-33	82.80	PREDICTED: uncharacterized protein LOC103487289 [Cucumis melo]	[more]
KAA0035148.1	2.3e-33	82.80	uncharacterized protein E6C27_scaffold57G002390 [Cucumis melo var. makuwa]	[more]
XP_011660264.1	8.7e-33	81.72	uncharacterized protein LOC105436354 [Cucumis sativus] >XP_031736764.1 uncharact...	[more]
KAG7036645.1	1.0e-28	79.79	hypothetical protein SDJN02_00265, partial [Cucurbita argyrosperma subsp. argyro...	[more]

BLAST of CcUC10G196470.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G196470.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SX16	1.1e-33	82.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5D3DZN8	1.1e-33	82.80	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B8U1	1.1e-33	82.80	uncharacterized protein LOC103487289 OS=Cucumis melo OX=3656 GN=LOC103487289 PE=...	[more]
A0A0A0M0V3	4.2e-33	81.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G679550 PE=4 SV=1	[more]
A0A6J1G9M3	4.8e-29	79.79	uncharacterized protein LOC111452065 OS=Cucurbita moschata OX=3662 GN=LOC1114520...	[more]

BLAST of CcUC10G196470.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G47820.1	3.1e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT1G47820.2	3.1e-12	42.71	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 68..93
None	No IPR available	PANTHER	PTHR37194	T2E6.7-RELATED	coord: 1..91

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G196470	CcUC10G196470	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196470.1-exon	CcUC10G196470.1-exon-CicolChr10:22738732..22739013	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G196470.1-cds	CcUC10G196470.1-cds-CicolChr10:22738732..22739013	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G196470.1	CcUC10G196470.1-protein	polypeptide