CcUC10G195850.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G195850.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Histidine--tRNA ligase
Location	CicolChr10: 21516535 .. 21516768 (-)
Sequence length	234
RNA-Seq Expression	CcUC10G195850.1
Synteny	CcUC10G195850.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTTGTTTACTCTACTATCTCTTCTTTTGCATACATAGACAATATGAACCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGTCCTGGCAAAAAATCGAGGCGTTGGAATGAGAAAAAACCAAAAGGAAGATCCTATTAGAACTATAATGCTCTTGGGATCGTGGAGTCATACTTGA

mRNA sequence

ATGTTTGTTTACTCTACTATCTCTTCTTTTGCATACATAGACAATATGAACCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGTCCTGGCAAAAAATCGAGGCGTTGGAATGAGAAAAAACCAAAAGGAAGATCCTATTAGAACTATAATGCTCTTGGGATCGTGGAGTCATACTTGA

Coding sequence (CDS)

ATGTTTGTTTACTCTACTATCTCTTCTTTTGCATACATAGACAATATGAACCCTCAACATGTTTGTAGTGATGAGAGTAGTGAGTCAAGTAGAACAATTGGAGAGAAACTTGTTCAAGCTTATCAGAATGTGAAGGTTGTCCTGGCAAAAAATCGAGGCGTTGGAATGAGAAAAAACCAAAAGGAAGATCCTATTAGAACTATAATGCTCTTGGGATCGTGGAGTCATACTTGA

Protein sequence

MFVYSTISSFAYIDNMNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWSHT

Homology

[Close]

BLAST of CcUC10G195850.1 vs. NCBI nr
Match: KGN52786.1 (hypothetical protein Csa_015138 [Cucumis sativus])

HSP 1 Score: 87.0 bits (214), Expect = 7.5e-14
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 16 MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWS 75
          M  QH  S +S  SSRT+GEKL QAY++VKV L KN+GVG R+NQ+EDPIRTIM LGSWS
Sbjct: 1  MKVQHEKSSDS--SSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 76 HT 78
          HT
Sbjct: 61 HT 60

[Close]

BLAST of CcUC10G195850.1 vs. NCBI nr
Match: KAA0044357.1 (hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486.1 hypothetical protein E5676_scaffold655G00850 [Cucumis melo var. makuwa])

HSP 1 Score: 79.0 bits (193), Expect = 2.0e-11
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 16 MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGS 75
          M  QH  S +S  SSRTIGEKL QAY++VKV LA  KNRGVGMR+NQKEDPIRTIM LG 
Sbjct: 1  MKVQHEKSSDS--SSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG- 60

Query: 76 WSHT 78
          WS T
Sbjct: 61 WSAT 61

[Close]

BLAST of CcUC10G195850.1 vs. NCBI nr
Match: KAE8009525.1 (hypothetical protein FH972_005957 [Carpinus fangiana])

HSP 1 Score: 56.6 bits (135), Expect = 1.1e-04
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK--------- 75
          M PQH   D S   +S RT+GEKL +AY+  ++ +A NR   G  +  +++         
Sbjct: 1  MKPQHTSGDGSLTQDSKRTVGEKLRRAYEVARIAVAGNRVWEGCSLPISKEIERRRWSYH 60

Query: 76 -EDPIRTIMLLGSWSHT 78
           EDPIRT+M LGSWSHT
Sbjct: 61 AEDPIRTMMFLGSWSHT 77

[Close]

BLAST of CcUC10G195850.1 vs. NCBI nr
Match: KAB2605171.1 (hypothetical protein D8674_004888 [Pyrus ussuriensis x Pyrus communis])

HSP 1 Score: 55.1 bits (131), Expect = 3.2e-04
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK--- 75
          M PQ++C + S   ES+R   E L QAYQ   VV+A + G            +G R+   
Sbjct: 1  MKPQNICGESSLCDESTRGFRETLRQAYQAAMVVMAGHGGHNNGRGLLVSKPIGGRRRWN 60

Query: 76 NQKEDPIRTIMLLGSWSHT 78
          N  EDPIRT++ LGSWSHT
Sbjct: 61 NYAEDPIRTLIFLGSWSHT 79

[Close]

BLAST of CcUC10G195850.1 vs. NCBI nr
Match: TQD76427.1 (hypothetical protein C1H46_038055 [Malus baccata])

HSP 1 Score: 54.7 bits (130), Expect = 4.1e-04
Identity = 32/79 (40.51%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAK------------NRGVGMR---K 75
          M PQ++C + S   ES+R   E L QAYQ   VV+A+            ++ +G R    
Sbjct: 1  MKPQNICGESSLYDESTRGFRETLCQAYQAAMVVMARHGRQNDGRGLLVSKPIGRRIRWN 60

Query: 76 NQKEDPIRTIMLLGSWSHT 78
          N  +DPIRT++ LGSWSHT
Sbjct: 61 NYADDPIRTLIFLGSWSHT 79

[Close]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL
Match: A0A0A0KY58 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1)

HSP 1 Score: 87.0 bits (214), Expect = 3.6e-14
Identity = 43/62 (69.35%), Postives = 50/62 (80.65%), Query Frame = 0


Query: 16 MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLAKNRGVGMRKNQKEDPIRTIMLLGSWS 75
          M  QH  S +S  SSRT+GEKL QAY++VKV L KN+GVG R+NQ+EDPIRTIM LGSWS
Sbjct: 1  MKVQHEKSSDS--SSRTVGEKLAQAYRDVKVALTKNQGVGTRRNQREDPIRTIMFLGSWS 60

Query: 76 HT 78
          HT
Sbjct: 61 HT 60

[Close]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL
Match: A0A5A7TR66 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold655G00850 PE=4 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 9.9e-12
Identity = 46/64 (71.88%), Postives = 50/64 (78.12%), Query Frame = 0


Query: 16 MNPQHVCSDESSESSRTIGEKLVQAYQNVKVVLA--KNRGVGMRKNQKEDPIRTIMLLGS 75
          M  QH  S +S  SSRTIGEKL QAY++VKV LA  KNRGVGMR+NQKEDPIRTIM LG 
Sbjct: 1  MKVQHEKSSDS--SSRTIGEKLAQAYRDVKVALALTKNRGVGMRRNQKEDPIRTIMFLG- 60

Query: 76 WSHT 78
          WS T
Sbjct: 61 WSAT 61

[Close]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL
Match: A0A2N9EC73 (Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS205 PE=4 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 1.8e-05
Identity = 35/78 (44.87%), Postives = 43/78 (55.13%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR------------GVGMRK--N 75
          M PQ +  D S   ES RT+GEK  QAY+   + +AKNR             +  RK  +
Sbjct: 1  MKPQQLSGDSSLTQESKRTVGEKFRQAYEVAIIAIAKNRVWEACTNLPISKEIERRKWSH 60

Query: 76 QKEDPIRTIMLLGSWSHT 78
            EDPIRT+M LGSWSHT
Sbjct: 61 HAEDPIRTLMFLGSWSHT 78

[Close]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL
Match: A0A5N6QQU4 (Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005957 PE=4 SV=1)

HSP 1 Score: 56.6 bits (135), Expect = 5.3e-05
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNR---GVGMRKNQK--------- 75
          M PQH   D S   +S RT+GEKL +AY+  ++ +A NR   G  +  +++         
Sbjct: 1  MKPQHTSGDGSLTQDSKRTVGEKLRRAYEVARIAVAGNRVWEGCSLPISKEIERRRWSYH 60

Query: 76 -EDPIRTIMLLGSWSHT 78
           EDPIRT+M LGSWSHT
Sbjct: 61 AEDPIRTMMFLGSWSHT 77

[Close]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL
Match: A0A5N5FU74 (Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D8674_004888 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 1.5e-04
Identity = 34/79 (43.04%), Postives = 44/79 (55.70%), Query Frame = 0


Query: 16 MNPQHVCSDES--SESSRTIGEKLVQAYQNVKVVLAKNRG------------VGMRK--- 75
          M PQ++C + S   ES+R   E L QAYQ   VV+A + G            +G R+   
Sbjct: 1  MKPQNICGESSLCDESTRGFRETLRQAYQAAMVVMAGHGGHNNGRGLLVSKPIGGRRRWN 60

Query: 76 NQKEDPIRTIMLLGSWSHT 78
          N  EDPIRT++ LGSWSHT
Sbjct: 61 NYAEDPIRTLIFLGSWSHT 79

The following BLAST results are available for this feature:

BLAST of CcUC10G195850.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KGN52786.1	7.5e-14	69.35	hypothetical protein Csa_015138 [Cucumis sativus]	[more]
KAA0044357.1	2.0e-11	71.88	hypothetical protein E6C27_scaffold46G00840 [Cucumis melo var. makuwa] >TYK29486...	[more]
KAE8009525.1	1.1e-04	42.86	hypothetical protein FH972_005957 [Carpinus fangiana]	[more]
KAB2605171.1	3.2e-04	43.04	hypothetical protein D8674_004888 [Pyrus ussuriensis x Pyrus communis]	[more]
TQD76427.1	4.1e-04	40.51	hypothetical protein C1H46_038055 [Malus baccata]	[more]

BLAST of CcUC10G195850.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A0A0KY58	3.6e-14	69.35	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G001535 PE=4 SV=1	[more]
A0A5A7TR66	9.9e-12	71.88	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A2N9EC73	1.8e-05	44.87	Uncharacterized protein OS=Fagus sylvatica OX=28930 GN=FSB_LOCUS205 PE=4 SV=1	[more]
A0A5N6QQU4	5.3e-05	42.86	Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_005957 PE=4 SV=1	[more]
A0A5N5FU74	1.5e-04	43.04	Uncharacterized protein OS=Pyrus ussuriensis x Pyrus communis OX=2448454 GN=D867...	[more]

BLAST of CcUC10G195850.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G195850	CcUC10G195850	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G195850.1-exon	CcUC10G195850.1-exon-CicolChr10:21516535..21516768	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G195850.1-cds	CcUC10G195850.1-cds-CicolChr10:21516535..21516768	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G195850.1	CcUC10G195850.1-protein	polypeptide