CcUC10G193770.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G193770.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	NADH-ubiquinone oxidoreductase chain 1
Location	CicolChr10: 15561270 .. 15570955 (-)
Sequence length	780
RNA-Seq Expression	CcUC10G193770.1
Synteny	CcUC10G193770.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGCTTTTCATCAGTCAAAAGCAGATATCGCCCCCCCCCCATGCTCCCCCGGTCCGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCTGTAAGCGCGGTGGGGGTGACAGAGGACGTGCTCGTACAGTTCAAAGAAGGGTATGATCAACTCGTTGATTGTTGGGAACTTTCACTCCTCTATATTCGAAATATGCCTTTCTAGGAGCATTACGATCTGCAGCTCAAATGGTCCCATATGAAGTCTCTATTGGTCTTATTCTTATTGTGGGCCTTGTGAGCGCGTTTGGATCAGCGAAGGCAATCGCTCTGATGTTCTCCTAACCCAACCCGGGAACAGACTGGAGGGAATCGCAGCATGGGGAATGTCCGCGTCTCGTCGCAAGGCTCATTTTGAGTTGTGGGTCATAGGGGGGTTCATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCGAAGAACCCCGGGGGTGACTGCAATGAGCAGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACGTGAGAGCAAGGGATCACCCAAGGAATGGACGAGCTCCAAGGAGGGAGGCAAAAACCGTGCTTTTAGAGAAGTGGTGGTCCGAATCTTATCTGAATTGCGAGAATAACTGACTCAGCCATGCCTATATATAGGCTCATGCTCCAAACAGCGCAGGGCCAAGCCTTTAGGTTGTTTAAGTAGATTGGGTGATAGATCGGCCATAGCAGTACTCCGGGATATAAACCAGGGCAACAAATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGAAAGGGCTGTAGGTGATGGCGCGTTCTGCTTCTTATCTAGAGAGGGGAGCTGAAATCGTTCCTATTGGGTCATGCATGGCAGCTGGTATAGATGAATAAAGGCGGGCCGCTTCAACAGGACTTATTCTCTTAATACGCGGCAAAGCGGAATAGGAAAGGGGCCGAGCTGACTGATGAATGCCTTTTTAGCCTTTAGAAAAAGGCTCTCATGTGAAGCTAACATGGCTGGCTACATAGAAGTATAGCCAAAGAAAGATGAGACGGGACGGACGGTCAGAGGCCGCAGCGGGACTACCATAGGAAAGCCCGACCCCTCCCCCTAACATAGAAAGAGATTCCCGTAATGTAAAAGTCTCTATGTGAATCTCTTCCCGACCAGGCCGAATCAGGCCACCACTTGGGGTGGGGAATGGCTCAGCCCACATGCATCATTTGATGAAAGCACTCCACTCCAAAAAAAGACTTCATCATTTGATGAATTTTTTCATCGAGCTGTACAGAGGTTGCGAGCCGGGCAGACTTGCCGAACTGGAAGGCTGGACCGTAAGGGTAGAGCTGATCCCACAAATTATGCTAAACCATCCCGTTCCTTTCTTTGCAGGGTCATGGTTCGGGTTTTCAATGATATACCTTCAGCTGCTGAGAAGTTTGGTGGTTCGGCTCCTTCACTAAACAGATGTAGCATGTTCAACAATATGATGAATGCTTGTGGCCTCATGGACCTGGGAGTCCAAGGTCCTTTATTCACTTGGAGCAACAAGAGAAAGGGTCTTGCTAAAGTCCAAGAACGACTAGATAGAGTTGTAGCAAACTCACAGTGGCGCATGTTATTTCCAGAGGGTGAAGCACTTACCGAGTATTCACTCGAACCATTGTCCAATATTGCTTCAGCTTGAGGCAAGTCTGATGGTAGATCTTTCGAGAAGGCCATTGTAGTGCCCTTAAACGAGCGTTTGGGGGGTCCCACGATGAATCCTATGTCCGAGGCACTTCAAGGCACATTATCAGCCCTAAGATTTTGGGCAGTGAGTTCTGATGAAGAGCCGTAAGTCGAAGAGTTTGAAAAAGATGAGCTTTATTCCCGCGAAATCGTGGTTTCCTAAAGAATGTTAACTTCGATAATCCATAGAATAAAACAGCATCTTTGGTGAAGCAAAGAGAGGTTCGGTCAAAAGCATCTACCGCGCACTCAATCCAATAAGCAAGCGCATAAGCAATACGAATCTCTTTCTCTTTCAGTATTCAATTAGGCAATCAGGGCTAAAGCACATACATATAGAGAGGAGCAAAAGCCACTTGGCGTTCCAACCCAGTTCCAACAATGCACTTTTCGGACCGAGAAAGCGGGACTGCTTGACGTTGCATATTAGAACTCATTAAAGCACAATTCGCATCATTATGTTCGATAAAAGGAATGAAGGAAGCTCCAATAGAAAAATATTGGAAGGGAAAAAGACTTCGAAGATGAACCTCTTCCCATTCAATAGTCAAGAATTCTTGACGGTATCGAGCTGGAACAATCTGTTCTTCCTGAATACCTGGATTCAGTGCCAAAGAATTTCCTGTCGCTACCATATACTATTCATCTCGACTTGGTGATAAATAAAGCATCCGCACTTTTTTTGAATCCTAAAGTAGCATAAAAAAATCCCCAAAGCTACAAGAAAGACGAGACTACAACCGCTACTTGCCCAATAGTACAGCGCCTTCCTCCCTGACTTGACTTTCTTAGCTACCAAGCCCCTCTTCAAACCCTTGCTAGAAGGACGAAAGGAAAGATTCTCTGTGATACCGCTTGAATAACGATAATCGGAGTGAAAAGCCTTAAAGAGAAAGCTTTAGCAACTGTAGGAGTTACTACTTACGCCAGAACCTGACGAGCTTACCAGAACTTTCTCCCACAACAAGAAAAGTTTGACTTAGACAAGTTCATGATATGAAGAGCCTTTAGATGAAGAACGCTCTACTAATACAAGTCAAGGAGAGGAAAGGACTCAAGATCCTGAGACATCGTAGTAGTAAAGGTCCTACATATAAGCCTTCAATCCCAACATTGGGCTTGATATGCTTTCTCTTCCATTTCTTGATATAGATATTTGATTGATTTTTAGGCCATGAAGAACGAGAGAGGGGAACTGGGGGTCAAAGTGACGAGACACCGGGATCGCATCGCCTTACGACACCAATAACAGTCATTTCTGATGAGGAGGAGGAAAGTCAAATAAAGGGGATTGAAATTGATCCGCCTTTTAGAGATAGGGTGGGGGGGGGGAAAGCAAAATCTCCCCCATAGGAGCAAACTCATTCCCACATTCGTTAGCCGCAAAGCAGGAAACGGCAGCGACTCACCGGTTGGTCACTTTTTAAGGTATCTCTGGTGATCCTTTACCCTATTCATGGCTGACTGCGTACATCAATGTCTCCCCACTAATTAGGCGGACGACAGGACTAGTGTCGCACAATGCCAATACCGTACAGAATGCATAGCCCCATTTACTATATGTACCGATGAAAGTGACAAAGGTCATAAGCCTGACGAAAAAGGGGCAAAGCAAGGGTTGTTGGCAATGCGACATCAATTGGCATATAACAAAGGACCAGTGAAAGCCAATGATAGAGCTTACCAGTAGGATAAATCGAGATATACCTACCGAATTTTACTTCTTCTTTCCGCCAATTTCGAGACCATTCGAAGTGCTGTCAGCCCAGGATGCCTAGAGCCGCAGAACGATTGGTTTCCAACCGCGCAAGGAGGTTGTCGGCAGATAGGAAAGGCCAAGATCCGAACTTGACGTCCCAAGGACTCTCTGTTCATCTTCGTTCAAGGCAGGACACATTTTACCCCAATGTTACAGTGGCTCTAGCTAAGGCTGCCAGCGGTCTAGATAAGACGCAGCGCAGGACTCTCAATTGAGATAAGCTATGACTCTCCAACAAGGACTACCTACAAGGGCAGCAACAACAACCCAGCCCGAAAGACAAAGTCTATGGCCAGAACTCTGAAGGCAGCGGAAGATCGTTCGAAAGCGAGTAGCTAAGACCCTGATTCGGGGAAAGCATCCAAAGAACAAGGTAGAAAGAAAGACAGGATGGCGTTGAAAGTTTATAAGCCAAGCCAAAGGACGGCGACAAGGAAGATGGCAAGCAGCCATTAAGAAGAAGATGGCCAGTATACTGAAAGACAGACTGAAGTAAGGAACGCAAGCCCCAGGACCGGGAAAGTATAGGTGGAGGAAAGCTAAAGAAAGAGAATGAGTGCACGGATGCAACGCCATACGTATTATGAAAGGTAGGTATAGTTGAGGGGTTGTTGCATAAAGCCTCGATAAAGTCTCTTACAGAGAGTCGTCTTAATCCCTCCATACTATTTTCCGAGTTTACCCAAAAACCTGATTAATGGGGATTTACCCACCTCTAAAAACTCGGAAGGTTCCGCCAGAAATAGTTTGGGATTCAATCGTTTGGTCTTTTGAAGTTCCCTGATTGGTTTGAGAACCTGATTGAAGAAGACCTGCATTTTGGAATACATGTAGATCTGCAGATCTAGTGTTTGAAGTTATTCGTTTGTGTTTTGATTCCACAGTTCAGACAGAGATGTTGTTGAGTATGTGGCTTGACTTACTCCAAGGCGACTCAAGTCTTGATTGAGCAGTCATTTTTCGTAGTCACGGGTCCTGCTTTAGCACCGTTTCACATTTGAAACTGTAGAGGGCGGTTTGTGACCTTCCAATTTTCTAGTGACGGGGGTCGTGAGAGATAGCAAAAGGATGCATCCATTTCTAGGCTAATTCAGTGTCTTGTGGATGCTATCTATGAGGTAGTTAGACACGCCCCTTGCTTGGGGGATCCGTTGTTGGGTCTTTTAAAAGGACTCCATCCGCAAGGCACAAACAAATAAAGGGAAAGCATGCTGTTTTTCTGAGGTTGGGTTTTGAGATGAGAGTAGGATACACACGTCGAAGAAATCCGTTGTCTAGAGAGAGTGGAGTGATCTCAAAGATTTCTCGATTTTCATATTTCAAACGTCGACTTTGATATAAATATCAATATATATATAGTTTTTTGAATCAAATCAAACGAGATTTCTCATTTGCTGCCACTCAACAACAGCAGGTCTTAGCTCTGCACATTCCTAGAAATTTGTTCTTTCTTTCAGCTAACGATTGTTATCATCTAGTATGAGAGTCCAAGTTATGCAGATATGGTAGCGATACAATCTTCTGGATCTGTAGTTGCTGATATGATTACAGCATTAACGCATACGATTGTCAAGGATCGCAAAATGGAACCTCTAAATGTAGATGTTTGGAATATGCGAATGTTGTTGCTTCTCAAAGAACAGGATCTTTTTCTTTTACATTCTTGAGAAAAAAGAAGCCCGCAGATCTGGTGCTAATGGCTTCTTCAATCAAGTGATGTTGTTGTAGCCAAACAACAAAAGAAAGCATATGAACAGCATCGATAGTTGTAGACAATAAAAAAAAGGTTCTTCGAAGCTGTGCTAACGGTGGTCAAGGATAAGGTACTAGTTTCAGTGGGAGACATTGAGTCCGCATGAGAAAGATGGGAGACTCCCCTGTACCTCTTTAGGGGAATGTATGAGTCAGTGACAATGGTAAACATTTTCTTCGGCAACGGTTTTTTCCAAGCAAGATGCTTGAGGGGACGAGTCTGTCTCAGCACTTAAACAAGATGAAGAAGATTCGAAAAGAATTTGGAGCTGTGAGAGTCAAAATGCCCTATACAAAAGAGTGATCAGTGACCGGGAAGTCCGCTTCAGTCATTTGAGTCTTTGACAACCACTCTCTCCTGTGAAACTCCTCCTTATTCTATGATTGAGCTGACCATTTTCTTTAGGCGGAAGCTAAAAAGAGATTTGAACAGCAGTCTGAAAAGACTAATGCTGCGCAAAAGAATATGTTTCTAAAAAAGAATAAGCACAAAGTGAGTGCAGAAGGACCTGAAAAACATAGAGTGTTGGTCCTGCAAGAAGAAAGGTCACTTGAATTTTGAGTGCCCATAAAAGAAGGGCAAAGGGAAAAAAAAAAGCCATGATGATCAGAAAAAGGTAGTGTTGGTCGTTAGCCCTGTTTGCCAACATTTCAGATAGTTGGTGGATCGGGTCCTCGCATCATATTTTCTTCCGAAAGGCAGAATTTGGTACAGATATGATTGAAGAACTAGGTTCTTCATATATGGGCAATGGCACTTTGACTATAATCAGAGGCCAAGGGAATGTGTAATTTCCGTTGGAAAACGGAAAGTCAGAAGAGGTATCAAATGTTGATATTTTCTTTTTTGTATCTGAAAAGAACCTACTCTCGACGAGAAGAGCCTTGACTTTCTATGTTATTAGTAAAGCGCGGGAGCGCTACTTCTAGCAGCTTGCTTCAAAAAGCTTGACTTAACCTTATTATTATTCAAAGGGGAAAGGCTTTTTTATAGATGTTGAAGAGGGGTGAGTAAGGGGTAGCTTCTTAGCGCTCCAGGAAATGAGATTCCGACCAAGAACAAAAGCCCGAGGTAGAGTGTCGGTCGTCAGGGCAGCCTGCCTTTTTTTTATAAGAGTAGGGGCGGATAGCTTGGCACCTGGAGATATAGGCGTAGCGCAGGGCAGTCTCGACGAGATAAGAATTCCATTTTTTAGTATACTTTGTTTGGGTTAGGCGAAGTTTAGAGGTGGAGCGAGATACCTCCATGCCGAGAAAGTAATACAGCGGATGAAAGAGAAAAATTAGTTGTCAAGCTCCTTGATGAAATCGAATAAAAGAGAAGAATCATTCCCGGTGAGAATGTTGTCGTCAACGTATAAAAGAAGGATGAGGCAACGACCATGACGTCGACAAACAAAATGTCAGAATCCGCACGGTTCCACTGTAGCTGGAACCCTTTATCCAAAATCAAGCAGTGAGAAACGAGCTAAATTTCTTCAAGCAGGCCCCCTTCTTAGCTCTTGGTGCCTGCTTTAGCCAATCGAAGCATATAGATCCGTAAATCGCTTTCTTGAGCTTGCATACCAAGTTAGGATTCCTAGGGGAAGATCAGCCTGGAGTTGGAGGAGGCTGAATAGAAACAGATTCTTGCGGATCCCCGCTTCCCTTATGTTGTTGAAAGGCATTCTTCACGTTAAGTTGATTGAAATAAGGGCAACTTTTTGATTGCAGCCAAGGCAAGAATGCCACGAATGGTGGTCATTTTAGCGGGCAAATGTTTCCCTTATCTTTTAAGGGGGTCGACTCAAGATTTTGGAAGGAATCCTTTAGCTAGCTTTGTATCTCTGACGCGAGCCATATGCTTTATGCTTGATCTTGTAAATCTACTTGCAGCCAATGGCTTGTTTCCCTGCGGGCAATGAGACTCAGTCTTATTTATTCTTTTTTTCCTTCTTCCTGCATAGCATCTCTCCAGCAAGAATGATTTCAGGCTGAAGCAAATGATTGAGGTTCATGAGAAGATTGAACTGACATGAGGTAAGCTCGATGTTTTGGGAAAAACTCTTTATAAAATCAGACAAAAATTCAGCAACGGGATAAGAAACGTCGAGAGGATCGACGAACCTGAGAGAGGGATCCAGAATCTGAGGAAGCGACTGGAAGGGAAGCAACAGGTCCCGACTGCTGATCTTCTGGAGTAGTCCTAGCCTGGGCAACATAATGGTTTCGCCGCCGAGAACATGCTGTGCCGGGTGATTGGAATCCTCTGAGGTCAACTGAACAAGCTGACAATCGGCAGAAGATGCTGAGCAAAGCAGCTGGCCTGAAGAGTGGGGCTGATCCGTAACATCAACTGCAGAAGAATGAGGTTCGAGTTGATGAATAGGAGAAGGCCGCAATACATCTCCATCACCATTCTCCCCCAGGGCTGATTAATTAGGTTAAAGAAAATATGAGGTGACCTCATTAAAGAGAACATTCAAGGATAATCTTCATCTCTTGGATTTCACGTCATAGCATCTATACCCGGACTGAGCATATCCAAGAAAGAAACAAGCGGTGGCCTTGGGGACAATTTTTCTCTTAACAGCGCAGGAATATGAACAAAACACGTGCATCCAAACACTCGAAAATGCCTGCCTATAGGATGGTACTGCCTCAGTAAGAAGTTCGTGAGGTGCCGCTGCTGCTTATTCCCTCTCGATTCCCCCCCCAAAAAAAAGGAGAGAGATGTCCCGTCCCTTCTTTATGCACATCCATATACATAGCCAGACACAAAGGTGTACAATCCGGTCAAAATCTGGGGTTCTTGTTGTTCATTCACTGATTGTTCTCTTACTTGCTCTAGTGGCTGGCAAACGCCAACCGAGAGGGGAGAACGAATGGCTCAGGAATCGACTGGTTCCGAGCGGACTCATGGAGCTGCTGCTTGGATTATCGTAGAATAAGAGGATTTGTCTTTCTTAGCTTAGGAAATGACTTCACTTTAAAGACCGCCGCTGGGAGGCGAGGGAGTCACTTGTCTGGTCTTGCGGTGCACTCACTCCCGTTACGAGAATGAAATGACGCCCCAGCTCAACTCGAGACCAAGACTCCTTACAACTCGCACCAGGTTGGTCTAGTAATTAGGGGGCGGCCGGAGATTGATTGAAAAGGCAGCCCAACCGCTCCTCCCCCCTAGCCTCCTACCTACTCGTGCTCGTAGCTCGATCGGAGGTCGACGAGTGTGGTCCGGCGAAAAAACATAAGTTGTCCATCTCGACATGATACGTGAATTGCTCAGTAGTGCTTCGCCACTACCGTAGCTGGCGGAAATAGCTTAATGGTAGAGCATAGCCTTGCCAAGGCTAAGGTTGAGGGTTCAAGTCCCTCCTTCCGCTCAAGGCTTCATCGTTTAGTGGTAACGAGTAGAGTGCATAAGCCCCCTTAGAAATAGGGTCAAGCAGCAAGCAGCCCCTTGTATAGGGTTCCAAACCAATCAACCTAATAATCTAATAAGAAAGGAGGGGCTTCCCGTTTTGTTTTAGCGCGCAGTGTACTAGTGAATAGGAAAAGCGGATTGAGATTACTAATGACGGATGGAGGTTGAGTCTCGAGCATGTTCGGTGCCTCGCCCTTGTCTCCTTCGCCTACCCCCCATATCTATAGGCGGCAATGGTCAGAGCTGGTAAGCATGGTAACTGTATCGGCGGCCGGAGCCGGCGCTCCGCGTTCGAGATAGGTTCCGCTCTGACGTACGCCCCACCTCACATAGAAGAAGGGGAACCCCTTCAATAGAATCGAAGAACCCGTGTGGGTGGGAGGGGATTGAATCATTCATTCATCAGATACGTCTTCTTCCGTGATCCATTTCATGTCAACTCTAATTAGTTATCAAAAGGTCGACTTTACAAAGGGAACGTCGTTTCCTAGGAACCTTGCAACCTTGCGGTTCCCGGTAACCGGCCGCATCTGCCCGATTACCTTCGTCACCGTCGGTTCCCGCAACCATTTCTTTTTTTAATGTTTTTATTTCTGAAGGGCTTACGGGGCATTACACCATTCGTAAATGGGGCTCATGGCTTTCGAAGTAAAAATCACCCTTAAAGTACACCCACACCCCTGTACCTCTTTAAAAGGCTCTGATAGTCGAATTTTTTGTTCTTTCTTATCTTAAAGGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACTAGGTAAAAGAAGCTTTTAGCCCTTGCTTGTTCAGTGCTATTTCCCGGTCGTCCAATGGTCTTTAGTCGTTATTAAGCCTGGTATGCCTCTGCCCTGTGTCCACAATTCCAGACCTTCAATCCTTGATCATCCCCGACCTCACTCAGCGGATGGGAAGCTTGAAAAAAGCGGATTAGAGCGCCTTCTTCCGTAA

mRNA sequence

ATGCTTTTCATCAGTCAAAAGCAGATATCGCCCCCCCCCCATGCTCCCCCGGTCCGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCTGTAAGCGCGGTGGGGGTGACAGAGGACGTGCTCGTACAGTTCAAAGAAGGGGGGGTTCATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCGAAGAACCCCGGGGGTGACTGCAATGAGCAGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACATCGGCCATAGCAGTACTCCGGGATATAAACCAGGGCAACAAATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGAAAGGGCTGAGCAAACTCATTCCCACATTCGTTAGCCGCAAAGCAGGAAACGGCAGCGACTCACCGGCGGACGACAGGACTAGTGTCGCACAATGCCAATACCGTACAGAATGCATAGCCCCATTTACTATATGTACCGATGAAAGTGACAAAGGTCATAAGCCTGACGAAAAAGGGGCAAAGCAAGGGTTGTTGGCAATGCGACATCAATTGGCATATAACAAAGGACCAGTGAAAGCCAATGATAGAGCTTACCAGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACTAGACCTTCAATCCTTGATCATCCCCGACCTCACTCAGCGGATGGGAAGCTTGAAAAAAGCGGATTAGAGCGCCTTCTTCCGTAA

Coding sequence (CDS)

ATGCTTTTCATCAGTCAAAAGCAGATATCGCCCCCCCCCCATGCTCCCCCGGTCCGCTTACCGAGGAATAGAAAGGGAAGAACTGGAGCCAGAGCTAGTTGGGTTGGGGTAAAGAGCTGTAAGCGCGGTGGGGGTGACAGAGGACGTGCTCGTACAGTTCAAAGAAGGGGGGGTTCATCTGATCAAGGGTCGGGGCACAAGGGTCCTGGTACTATCCAGGTGCGAAGAACCCCGGGGGTGACTGCAATGAGCAGAAATCTCACTCACCGGCCTAAACGACGAGCAAACACTCGAACATCGGCCATAGCAGTACTCCGGGATATAAACCAGGGCAACAAATGTCGAGCATACGACGATGCCGCCCGTTTTCATTTCGTGGAAGTCCCCGGCAGAGGAAAGAAAGGGCTGAGCAAACTCATTCCCACATTCGTTAGCCGCAAAGCAGGAAACGGCAGCGACTCACCGGCGGACGACAGGACTAGTGTCGCACAATGCCAATACCGTACAGAATGCATAGCCCCATTTACTATATGTACCGATGAAAGTGACAAAGGTCATAAGCCTGACGAAAAAGGGGCAAAGCAAGGGTTGTTGGCAATGCGACATCAATTGGCATATAACAAAGGACCAGTGAAAGCCAATGATAGAGCTTACCAGGATCGTATTGACCCTCTTCAGAGCCTATGGGAGAAGACTAGACCTTCAATCCTTGATCATCCCCGACCTCACTCAGCGGATGGGAAGCTTGAAAAAAGCGGATTAGAGCGCCTTCTTCCGTAA

Protein sequence

MLFISQKQISPPPHAPPVRLPRNRKGRTGARASWVGVKSCKRGGGDRGRARTVQRRGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSPADDRTSVAQCQYRTECIAPFTICTDESDKGHKPDEKGAKQGLLAMRHQLAYNKGPVKANDRAYQDRIDPLQSLWEKTRPSILDHPRPHSADGKLEKSGLERLLP

Homology

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BLAST of CcUC10G193770.1 vs. NCBI nr
Match: CAB4076422.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 135.2 bits (339), Expect = 8.1e-28
Identity = 74/111 (66.67%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCR 115
           R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  
Sbjct: 179 RAALSDQGPGHKGPSTIQVRRSPEVTAMSRNLTHRPKRRANTRTSAIGVLRDINQGNKSG 238

Query: 116 AYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSPADDRTSVAQCQ 167
           AY DAARFHFVEVPGRG KG    +P +  +K G    +P+ D   ++Q +
Sbjct: 239 AYGDAARFHFVEVPGRG-KGCRGFLPCY--QKGGWVKQTPSLDEHGLSQVE 286

[Close]

BLAST of CcUC10G193770.1 vs. NCBI nr
Match: CAB4077248.1 (unnamed protein product [Lactuca saligna])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCR 115
           R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  
Sbjct: 17  RAALSDQGPGHKGPSTIQVRRSPEVTAMSRNLTHRPKRRANTRTSAIGVLRDINQGNKSG 76

Query: 116 AYDDAARFHFVEVPGRGK 134
           AY DAARFHFVEVPGRGK
Sbjct: 77  AYGDAARFHFVEVPGRGK 94

[Close]

BLAST of CcUC10G193770.1 vs. NCBI nr
Match: CAB4072304.1 (unnamed protein product [Lactuca saligna] >CAB4073548.1 unnamed protein product [Lactuca saligna] >CAB4074742.1 unnamed protein product [Lactuca saligna])

HSP 1 Score: 131.3 bits (329), Expect = 1.2e-26
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCR 115
           R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  
Sbjct: 17  RAALSDQGPGHKGPSTIQVRRSPEVTAMSRNLTHRPKRRANTRTSAIGVLRDINQGNKSG 76

Query: 116 AYDDAARFHFVEVPGRGK 134
           AY DAARFHFVEVPGRGK
Sbjct: 77  AYGDAARFHFVEVPGRGK 94

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BLAST of CcUC10G193770.1 vs. NCBI nr
Match: KAG4906012.1 (hypothetical protein JHK86_057259 [Glycine max] >KAG5070465.1 hypothetical protein JHK85_002842 [Glycine max] >KAG5070487.1 hypothetical protein JHK85_002864 [Glycine max] >KAG5138863.1 hypothetical protein JHK84_032631 [Glycine max] >KAG5138881.1 hypothetical protein JHK84_032649 [Glycine max])

HSP 1 Score: 129.0 bits (323), Expect = 5.8e-26
Identity = 71/102 (69.61%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT---------------- 115
           R   SDQG GHKGPGTIQVRRTP VTAMSRNLTHRPKRRANTRT                
Sbjct: 105 RADLSDQGPGHKGPGTIQVRRTPEVTAMSRNLTHRPKRRANTRTHAIRVILQTGRGQAFR 164

Query: 116 --------SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK 134
                   SAI VLRDINQGN+CRAYDDAARFHFVEVPGRGK
Sbjct: 165 FLSRLGDRSAIGVLRDINQGNQCRAYDDAARFHFVEVPGRGK 206

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BLAST of CcUC10G193770.1 vs. NCBI nr
Match: KAG6383906.1 (hypothetical protein SASPL_156330 [Salvia splendens] >KAG6384669.1 hypothetical protein SASPL_155523 [Salvia splendens])

HSP 1 Score: 126.3 bits (316), Expect = 3.8e-25
Identity = 68/82 (82.93%), Postives = 68/82 (82.93%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRT----SAIAVLRDINQG 115
           R   S QG GHKGPGTIQVRRTP VTAMSRNLTH PKRRANTRT    SAI VLRDINQG
Sbjct: 473 RAALSAQGPGHKGPGTIQVRRTPEVTAMSRNLTHGPKRRANTRTLGDRSAIGVLRDINQG 532

Query: 116 NKCRAYDDAARFHFVEVPGRGK 134
           NK  AYDDAARFHFVEVPGRGK
Sbjct: 533 NKSGAYDDAARFHFVEVPGRGK 554

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BLAST of CcUC10G193770.1 vs. ExPASy Swiss-Prot
Match: P08834 (NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 3.2e-11
Identity = 36/43 (83.72%), Postives = 36/43 (83.72%), Query Frame = 0


Query: 3  FISQKQISPPPHAPPVRLPRNRKGRTGARASWVGVKSCKRGGG 46
          F S K    PPHAPPVRLPRNRKGRTGARASWVGVKS KRGGG
Sbjct: 54 FPSVKSRYRPPHAPPVRLPRNRKGRTGARASWVGVKSRKRGGG 96

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BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL
Match: A0A6S7L3E4 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5156 PE=4 SV=1)

HSP 1 Score: 135.2 bits (339), Expect = 3.9e-28
Identity = 74/111 (66.67%), Postives = 83/111 (74.77%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCR 115
           R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  
Sbjct: 179 RAALSDQGPGHKGPSTIQVRRSPEVTAMSRNLTHRPKRRANTRTSAIGVLRDINQGNKSG 238

Query: 116 AYDDAARFHFVEVPGRGKKGLSKLIPTFVSRKAGNGSDSPADDRTSVAQCQ 167
           AY DAARFHFVEVPGRG KG    +P +  +K G    +P+ D   ++Q +
Sbjct: 239 AYGDAARFHFVEVPGRG-KGCRGFLPCY--QKGGWVKQTPSLDEHGLSQVE 286

[Close]

BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL
Match: A0A6N2KCU0 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS121579 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 90/173 (52.02%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 6   QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR------------- 65
           Q +    PHAP VRLPR   GR  +++ W G++           C+R             
Sbjct: 42  QSKADTAPHAPTVRLPRCGAGRGQSKSRW-GIEPLYWSYSYCAPCERVWIREGNRSDVPL 101

Query: 66  ---GGGDRGRAR--------------TVQRRGGSSDQGSGHKGPGTIQVRRTPGVTAMSR 125
              G    G A                V  R   SDQG GHKGPGTIQVRRTP VTAMSR
Sbjct: 102 TQPGNEPEGTAAWGMSASRRKACFELWVIGRAAFSDQGPGHKGPGTIQVRRTPEVTAMSR 161

Query: 126 NLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK 134
           NLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Sbjct: 162 NLTHRPKRRANTRTRLGDRSAIGVLRGINQGNKCRAYDDAARFHFMEVPGRGK 213

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BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL
Match: A0A6N2LVG4 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS279543 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 90/173 (52.02%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 6   QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR------------- 65
           Q +    PHAP VRLPR   GR  +++ W G++           C+R             
Sbjct: 79  QSKADTAPHAPTVRLPRCGAGRGQSKSRW-GIEPLYWSYSYCAPCERVWIREGNRSDVPL 138

Query: 66  ---GGGDRGRAR--------------TVQRRGGSSDQGSGHKGPGTIQVRRTPGVTAMSR 125
              G    G A                V  R   SDQG GHKGPGTIQVRRTP VTAMSR
Sbjct: 139 TQPGNEPEGTAAWGMSASRRKACFELWVIGRAAFSDQGPGHKGPGTIQVRRTPEVTAMSR 198

Query: 126 NLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK 134
           NLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Sbjct: 199 NLTHRPKRRANTRTRLGDRSAIGVLRGINQGNKCRAYDDAARFHFMEVPGRGK 250

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BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL
Match: A0A6N2N7R9 (Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS478076 PE=3 SV=1)

HSP 1 Score: 133.7 bits (335), Expect = 1.1e-27
Identity = 90/173 (52.02%), Postives = 98/173 (56.65%), Query Frame = 0


Query: 6   QKQISPPPHAPPVRLPRNRKGRTGARASWVGVK----------SCKR------------- 65
           Q +    PHAP VRLPR   GR  +++ W G++           C+R             
Sbjct: 42  QSKADTAPHAPTVRLPRCGAGRGQSKSRW-GIEPLYWSYSYCAPCERVWIREGNRSDVPL 101

Query: 66  ---GGGDRGRAR--------------TVQRRGGSSDQGSGHKGPGTIQVRRTPGVTAMSR 125
              G    G A                V  R   SDQG GHKGPGTIQVRRTP VTAMSR
Sbjct: 102 TQPGNEPEGTAAWGMSASRRKACFELWVIGRAAFSDQGPGHKGPGTIQVRRTPEVTAMSR 161

Query: 126 NLTHRPKRRANTRT-----SAIAVLRDINQGNKCRAYDDAARFHFVEVPGRGK 134
           NLTHRPKRRANTRT     SAI VLR INQGNKCRAYDDAARFHF+EVPGRGK
Sbjct: 162 NLTHRPKRRANTRTRLGDRSAIGVLRGINQGNKCRAYDDAARFHFMEVPGRGK 213

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BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL
Match: A0A6S7L0J1 (Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1235 PE=3 SV=1)

HSP 1 Score: 131.3 bits (329), Expect = 5.7e-27
Identity = 67/78 (85.90%), Postives = 68/78 (87.18%), Query Frame = 0


Query: 56  RGGSSDQGSGHKGPGTIQVRRTPGVTAMSRNLTHRPKRRANTRTSAIAVLRDINQGNKCR 115
           R   SDQG GHKGP TIQVRR+P VTAMSRNLTHRPKRRANTRTSAI VLRDINQGNK  
Sbjct: 17  RAALSDQGPGHKGPSTIQVRRSPEVTAMSRNLTHRPKRRANTRTSAIGVLRDINQGNKSG 76

Query: 116 AYDDAARFHFVEVPGRGK 134
           AY DAARFHFVEVPGRGK
Sbjct: 77  AYGDAARFHFVEVPGRGK 94

The following BLAST results are available for this feature:

BLAST of CcUC10G193770.1 vs. NCBI nr


Match Name	E-value	Identity	Description
CAB4076422.1	8.1e-28	66.67	unnamed protein product [Lactuca saligna]	[more]
CAB4077248.1	1.2e-26	85.90	unnamed protein product [Lactuca saligna]	[more]
CAB4072304.1	1.2e-26	85.90	unnamed protein product [Lactuca saligna] >CAB4073548.1 unnamed protein product ...	[more]
KAG4906012.1	5.8e-26	69.61	hypothetical protein JHK86_057259 [Glycine max] >KAG5070465.1 hypothetical prote...	[more]
KAG6383906.1	3.8e-25	82.93	hypothetical protein SASPL_156330 [Salvia splendens] >KAG6384669.1 hypothetical ...	[more]

BLAST of CcUC10G193770.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P08834	3.2e-11	83.72	NADH-ubiquinone oxidoreductase chain 1 OS=Citrullus lanatus OX=3654 GN=ND1 PE=2 ...	[more]

BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6S7L3E4	3.9e-28	66.67	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS5156 PE=4 SV=1	[more]
A0A6N2KCU0	1.1e-27	52.02	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS121579 PE=3 SV=...	[more]
A0A6N2LVG4	1.1e-27	52.02	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS279543 PE=3 SV=...	[more]
A0A6N2N7R9	1.1e-27	52.02	Uncharacterized protein OS=Salix viminalis OX=40686 GN=SVIM_LOCUS478076 PE=3 SV=...	[more]
A0A6S7L0J1	5.7e-27	85.90	Uncharacterized protein OS=Lactuca saligna OX=75948 GN=LSAL_LOCUS1235 PE=3 SV=1	[more]

BLAST of CcUC10G193770.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 234..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 233..259
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..74

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G193770	CcUC10G193770	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15561270..15561351	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15561461..15561502	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15567468..15567658	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15567743..15567800	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15570086..15570196	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15570390..15570517	exon
CcUC10G193770.1-exon	CcUC10G193770.1-exon-CicolChr10:15570788..15570955	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15561270..15561351	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15561461..15561502	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15567468..15567658	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15567743..15567800	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15570086..15570196	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15570390..15570517	CDS
CcUC10G193770.1-cds	CcUC10G193770.1-cds-CicolChr10:15570788..15570955	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G193770.1	CcUC10G193770.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0022900	electron transport chain
biological_process	GO:0006412	translation
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0031966	mitochondrial membrane
cellular_component	GO:0005886	plasma membrane
cellular_component	GO:0070469	respirasome
cellular_component	GO:0015935	small ribosomal subunit
molecular_function	GO:0008137	NADH dehydrogenase (ubiquinone) activity
molecular_function	GO:0003735	structural constituent of ribosome