CcUC10G187910.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G187910.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	vacuolar protein sorting-associated protein 55 homolog
Location	CicolChr10: 2017676 .. 2020853 (+)
Sequence length	852
RNA-Seq Expression	CcUC10G187910.1
Synteny	CcUC10G187910.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

TTCGACATCTTACAATCACCTTATTTGGTGTTATCTTCATTTGATTTCTACCGATTGTCCAATAATAATAATAATAATAATAGTGGGCTGAAACTCCGCCGTCCGTGATCGGAATCGGACTGCGAAGTCGGGGAAACGAGAAAATTTCTTCACGAATCCCCATCAAAAGGTACCTAATCCTCGCAATTTCTTTGCCTCTTAATCTCGTTTTCTGAGAGAATTCGGTATCATTTCTGTCTGCAAAAGCACTTGATTCTACTGTTACGAAACCCTAGTGCTGAAATTTTGATACTTTTTCTACCACTGCATAATATTATTTACGTTTGTTAGAAAAGAGGGTTGAGATTGAGAATTGTCCACCCTTACGGTTGAGAGGAAACAGGAATTGTTGTTATGGGAGGAGTTATTTCGATTTTCGTTGTTCATGAAGCATTTTAGATTTCTAAGAATAAGGCTAGCAATTCAGTTATGAATATACATACATCGCATTTATATTCACCATATTGGCTTGGTGATTTTGAGCATTCAATTTGAAGTTGGAAATTTTTTGTTACATTGGTTATTTGGGAAAATTATCCCACTATTGACTCCATTCTGCTAGTTTTACAATGTCACTGTAAATACGGGTGTTTGAGTAACAATATAACTCAATGAAGAATCCTACATGAATTCTTTTCTATCGTTGTGTTAAGTTTAAGGACAGAGGAGTTGAATTCTTATGGGAGGAGTTACTTTGATTTTCATTGTTCATGAAGCATTTCAGTTGTAAATGTTCATAAACCATATTTATATTCACTAGATTGGTTTGGTGATTTTGGCGTTCGATTTGAAGCTCGAAATGTTTGCCATATTGGTTGTCAATATCAAAATTTTCAAGTCCCTTCTGCTAATTTTACTCTGTCCTTGTGTAGATGGGTGTTTGAGTAACAATGCCACTCAATGAAGAATTATATAACTCAAAAATACCAATTTATATGTAAAACCGATGCACTTACGAAGATCAACTTTGTGTTCTTTGCCTCCCACTTATCCTCTTGTAGACTTCTCATTTGGAGTTCTTTTTTGTAGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGTCAGTAGAGTCTCTTCGGAAACATTTGATTCTTTGAACAATGTCTTTATACTTCTTGGCTTTAAAAGTCATTTTTGTTATCTCATTTATCATGTGCTATGACAGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGGTATATGACTAAAATTTCTCCTGGATCCTCTTTTAGCTTTTACAACATGACGTTTCTTTGCAGCTAAGTTTTTTATTTTTTATTTTTTTTTACTTCATATCTTATTTGCTGGACTTACTATACTGATTTTATTTCTGCCAGTACTGTGGGTGTATGTTTTCCATCCACTTAACTTCTGTTTATATACTTTTAATAATGAGCTTTTTAGTTACTTTGATTGAATTGCATGGCTAGCTAGAACTAGAAGTGCTTCTCATCTCCGTTGTGCTCCACTTGAAACTCTCTTTCTAGTTTCTAGCATTTTTATTGGACATGAATCGCATAATGAAAGAGTAAGGGTTTTGAATTGTTCTTATACAACCAACCCCTCATCCAGAAATGGTTGAAAGGTTGAAATTCAAACCGTTGAATGATAACCAAAGGACAATCCATTTTATTTCCCTGTGTGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTCTCTTTTTAATTATAAAATGATTTCCTATTAATTGTACTACAACAGTTCAAGAAATTCCGAGACTAAACATTTATGGAGATCGAAATTTTAATCAAAATGATCCATACAATTTGACTCTACTTGTTTCCATAATTTTTATAGTGATTGTATCGATGGTGTATCACTATAGGCCTTAGCCTCAATTTTATTTATCAACAGCAATGACAAGATTCAAGAGCTCCCGACCTCCCAATTCTCATAAGAGAACCCAATTACAGAGTATAGCCAAAAAGATACCCCCTCAAAGCAAAACAGTTTGTATATTGTAAACGTTTCATATTTCTAACACTAAGGCCCCTAATAAACAATATTCTTAGGCCCACACTAAATAAACCTGCCTTACCTCACCTTTAGATTCTGTATAATGAGTATGACATAGTGTCTTTACTCTTTAGAATCCATCCCCTTAGTCTCACCAGTTTACATAGTGTATAATGAGTTTGACATAATCATCCTGTTTCAATTCAAAAACCCAACTTGAATTTAATATGTTGAACATACATGGATGTTGTGTATATATAATATAGGTTAAATTGCAAATTTGGTCCATATCGTCTGGAAAAAGTTGAAATTTAAGGTCTATGACTTGATAAAATATTCATAAATAGAGGACTATCAATGAGATTTTATCGAACCATAAGGTCTAAATTCTAACTTTTAAAATCATAGGGATTAAATCTAACTTTCTTCGAACCAAGTTTGACCTATATATATGTATTTTCTTTGTTATGCTTTAATCCAGGTCAGAAGATATATATTTTTCTTGACTAATTTCATGACATCATTCTTTGCAGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCAGGGTCAGATAGTTCTTCACTGTATTCCGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTTATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTACCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCATCTTCCCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCAATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

mRNA sequence

TTCGACATCTTACAATCACCTTATTTGGTGTTATCTTCATTTGATTTCTACCGATTGTCCAATAATAATAATAATAATAATAGTGGGCTGAAACTCCGCCGTCCGTGATCGGAATCGGACTGCGAAGTCGGGGAAACGAGAAAATTTCTTCACGAATCCCCATCAAAAGCTTTTGACCTAAATGAGGTGAGCATCCAACCAATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCAGGGTCAGATAGTTCTTCACTGTATTCCGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTTATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTACCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCATCTTCCCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCAATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Coding sequence (CDS)

ATGGCAGACTTACCAGGTTCTTTGCAGGCCTGTTTGAGTATGGGGAAAGTGGCATTCTTAGCAATTTTGGTTTCTGGAGGAATTGTGATGCAGATATTGGCATGCGCCTTGTACAATAATTGGTGGCCAATGCTAAGTGTGATAATGTATGTGCTTCTCCCCATGCCTTTATTATTCTTTGCAGGGTCAGATAGTTCTTCACTGTATTCCGATTCTAACGATAGGTTTGACTTTTGCCTCTGTAACCCATTTGATAAGTGTTTTTTATCAGTTGAAAACAGTAATTTTAAGATATTGAAAGATTACCCAAAACAAACTTTTGTATTCATAAAATTCACGTACTCTTCATCTTCCCCCCACATATCATTATCATTGAGACAGCTGGATCAACGCGACGAAATTCTTGACCGGAGCTTCGACTGTAGGAAGCATTGCCATCCCCATCATTCTGAAGCATGCCGGGATCATCGGCTGGGGGGCAATGGCAATGGACCTCTCATCGTTTGTGGTATTCGTGATTGCCATTTTGTGTTTCATGGGGATGAGCGAAGACGACGACTACACTATGTTCTGAGATACTCCATCTCCATGGCAATGAAGCTGTGCTATCTCCATCAGGTGAGGCTTCTGGCTCTGTTCATTCTTGTCTGA

Protein sequence

MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFFAGSDSSSLYSDSNDRFDFCLCNPFDKCFLSVENSNFKILKDYPKQTFVFIKFTYSSSSPHISLSLRQLDQRDEILDRSFDCRKHCHPHHSEACRDHRLGGNGNGPLIVCGIRDCHFVFHGDERRRRLHYVLRYSISMAMKLCYLHQVRLLALFILV

Homology

[Close]

BLAST of CcUC10G187910.1 vs. NCBI nr
Match: KAG7015678.1 (Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 173.3 bits (438), Expect = 2.2e-39
Identity = 110/218 (50.46%), Postives = 113/218 (51.83%), Query Frame = 0


Query: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
           MADLPGSLQACLSMGKVAFLAILVSGGIV+QIL                           
Sbjct: 1   MADLPGSLQACLSMGKVAFLAILVSGGIVLQIL--------------------------- 60

Query: 61  AGSDSSSLYSDSNDRFDFCLCNPFDKCFLSVENSNFKILKDYPKQTFVFIKFTYSSSSPH 120
                                                                       
Sbjct: 61  ------------------------------------------------------------ 120

Query: 121 ISLSLRQLDQRDEILDRSFDCRKHCHPHHSEACRDHRLGGNGNGPLIVCGIRDCHFVFHG 180
                  LDQ DEILDRS D RKHCHPHHSEAC DHRLGGNGNGPL+V  IRDCHFVFHG
Sbjct: 121 -------LDQCDEILDRSLDDRKHCHPHHSEACGDHRLGGNGNGPLVVRSIRDCHFVFHG 124

Query: 181 DERRRRLHYVLRYSISMAM--KLCYLHQVRLLALFILV 217
           DERRRRLH+VLRY ISMAM  KLCYLH VRLL LFILV
Sbjct: 181 DERRRRLHHVLRYCISMAMKLKLCYLHLVRLLVLFILV 124

[Close]

BLAST of CcUC10G187910.1 vs. NCBI nr
Match: XP_038906097.1 (vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida] >XP_038906098.1 vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida])

HSP 1 Score: 142.9 bits (359), Expect = 3.2e-30
Identity = 72/74 (97.30%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DSN+
Sbjct: 61 AGSDSSSLYTDSNN 74

[Close]

BLAST of CcUC10G187910.1 vs. NCBI nr
Match: XP_022923424.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_022923425.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_023553141.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553142.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo] >XP_023553143.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita pepo subsp. pepo])

HSP 1 Score: 141.7 bits (356), Expect = 7.2e-30
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DS+D
Sbjct: 61 AGSDSSSLYTDSSD 74

[Close]

BLAST of CcUC10G187910.1 vs. NCBI nr
Match: XP_022965211.1 (vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965212.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965213.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_022965214.1 vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima])

HSP 1 Score: 141.4 bits (355), Expect = 9.4e-30
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DS D
Sbjct: 61 AGSDSSSLYTDSTD 74

[Close]

BLAST of CcUC10G187910.1 vs. NCBI nr
Match: XP_004150170.1 (vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739448.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031739449.1 vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >KGN55797.1 hypothetical protein Csa_009853 [Cucumis sativus])

HSP 1 Score: 141.0 bits (354), Expect = 1.2e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DSND
Sbjct: 61 AGSDSSSLYTDSND 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy Swiss-Prot
Match: Q9AST6 (Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana OX=3702 GN=At1g32410 PE=2 SV=1)

HSP 1 Score: 120.9 bits (302), Expect = 1.7e-26
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL
Match: A0A6J1E6D1 (vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita moschata OX=3662 GN=LOC111431123 PE=3 SV=1)

HSP 1 Score: 141.7 bits (356), Expect = 3.5e-30
Identity = 71/74 (95.95%), Postives = 74/74 (100.00%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DS+D
Sbjct: 61 AGSDSSSLYTDSSD 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL
Match: A0A6J1HL31 (vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita maxima OX=3661 GN=LOC111465136 PE=3 SV=1)

HSP 1 Score: 141.4 bits (355), Expect = 4.6e-30
Identity = 71/74 (95.95%), Postives = 73/74 (98.65%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQACLSMGKVAFLAILVSGGIV+QILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVLQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DS D
Sbjct: 61 AGSDSSSLYTDSTD 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL
Match: A0A0A0L5B3 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1)

HSP 1 Score: 141.0 bits (354), Expect = 6.0e-30
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPASLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DSND
Sbjct: 61 AGSDSSSLYTDSND 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL
Match: A0A1S3BJT4 (vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 GN=LOC103490815 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29
Identity = 71/74 (95.95%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLP SLQACL MGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPPSLQACLGMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
          AGSDSSSLY+DSND
Sbjct: 61 AGSDSSSLYTDSND 74

[Close]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL
Match: A0A6J1DML0 (vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX=3673 GN=LOC111022633 PE=3 SV=1)

HSP 1 Score: 140.2 bits (352), Expect = 1.0e-29
Identity = 70/74 (94.59%), Postives = 72/74 (97.30%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MADLPGSLQAC SMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADLPGSLQACFSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDSSSLY++SND
Sbjct: 61 GGSDSSSLYTESND 74

[Close]

BLAST of CcUC10G187910.1 vs. TAIR 10
Match: AT1G32410.1 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

[Close]

BLAST of CcUC10G187910.1 vs. TAIR 10
Match: AT1G32410.2 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

[Close]

BLAST of CcUC10G187910.1 vs. TAIR 10
Match: AT1G32410.3 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

[Close]

BLAST of CcUC10G187910.1 vs. TAIR 10
Match: AT1G32410.4 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

[Close]

BLAST of CcUC10G187910.1 vs. TAIR 10
Match: AT1G32410.5 (Vacuolar protein sorting 55 (VPS55) family protein )

HSP 1 Score: 120.9 bits (302), Expect = 1.2e-27
Identity = 58/74 (78.38%), Postives = 69/74 (93.24%), Query Frame = 0


Query: 1  MADLPGSLQACLSMGKVAFLAILVSGGIVMQILACALYNNWWPMLSVIMYVLLPMPLLFF 60
          MAD+PG L+ CL MGK+AFLAILVS GIV+QILACAL+NNWWPMLSVIMYVLLPMPLLFF
Sbjct: 1  MADVPGYLRTCLDMGKIAFLAILVSTGIVLQILACALFNNWWPMLSVIMYVLLPMPLLFF 60

Query: 61 AGSDSSSLYSDSND 75
           GSDS+SL+++S++
Sbjct: 61 GGSDSTSLFNESDN 74

The following BLAST results are available for this feature:

BLAST of CcUC10G187910.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAG7015678.1	2.2e-39	50.46	Vacuolar protein sorting-associated protein 55-like protein [Cucurbita argyrospe...	[more]
XP_038906097.1	3.2e-30	97.30	vacuolar protein sorting-associated protein 55 homolog [Benincasa hispida] >XP_0...	[more]
XP_022923424.1	7.2e-30	95.95	vacuolar protein sorting-associated protein 55 homolog [Cucurbita moschata] >XP_...	[more]
XP_022965211.1	9.4e-30	95.95	vacuolar protein sorting-associated protein 55 homolog [Cucurbita maxima] >XP_02...	[more]
XP_004150170.1	1.2e-29	95.95	vacuolar protein sorting-associated protein 55 homolog [Cucumis sativus] >XP_031...	[more]

BLAST of CcUC10G187910.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9AST6	1.7e-26	78.38	Vacuolar protein sorting-associated protein 55 homolog OS=Arabidopsis thaliana O...	[more]

BLAST of CcUC10G187910.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1E6D1	3.5e-30	95.95	vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita moschata OX=...	[more]
A0A6J1HL31	4.6e-30	95.95	vacuolar protein sorting-associated protein 55 homolog OS=Cucurbita maxima OX=36...	[more]
A0A0A0L5B3	6.0e-30	95.95	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G016420 PE=3 SV=1	[more]
A0A1S3BJT4	1.0e-29	95.95	vacuolar protein sorting-associated protein 55 homolog OS=Cucumis melo OX=3656 G...	[more]
A0A6J1DML0	1.0e-29	94.59	vacuolar protein sorting-associated protein 55 homolog OS=Momordica charantia OX...	[more]

BLAST of CcUC10G187910.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G32410.1	1.2e-27	78.38	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.2	1.2e-27	78.38	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.3	1.2e-27	78.38	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.4	1.2e-27	78.38	Vacuolar protein sorting 55 (VPS55) family protein	[more]
AT1G32410.5	1.2e-27	78.38	Vacuolar protein sorting 55 (VPS55) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007262	Vps55/LEPROT	PFAM	PF04133	Vps55	coord: 18..71 e-value: 4.6E-16 score: 58.8
IPR007262	Vps55/LEPROT	PANTHER	PTHR12050	LEPTIN RECEPTOR-RELATED	coord: 1..76
None	No IPR available	PANTHER	PTHR12050:SF1	VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 55 HOMOLOG	coord: 1..76

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G187910	CcUC10G187910	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G187910.1-exon	CcUC10G187910.1-exon-CicolChr10:2017676..2017844	exon
CcUC10G187910.1-exon	CcUC10G187910.1-exon-CicolChr10:2018744..2018874	exon
CcUC10G187910.1-exon	CcUC10G187910.1-exon-CicolChr10:2018980..2019019	exon
CcUC10G187910.1-exon	CcUC10G187910.1-exon-CicolChr10:2020342..2020853	exon

The following five_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G187910.1-five_prime_utr	CcUC10G187910.1-five_prime_utr-CicolChr10:2017676..2017844	five_prime_UTR
CcUC10G187910.1-five_prime_utr	CcUC10G187910.1-five_prime_utr-CicolChr10:2018744..2018775	five_prime_UTR

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G187910.1-cds	CcUC10G187910.1-cds-CicolChr10:2018776..2018874	CDS
CcUC10G187910.1-cds	CcUC10G187910.1-cds-CicolChr10:2018980..2019019	CDS
CcUC10G187910.1-cds	CcUC10G187910.1-cds-CicolChr10:2020342..2020853	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G187910.1	CcUC10G187910.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0032511	late endosome to vacuole transport via multivesicular body sorting pathway
cellular_component	GO:0005768	endosome
cellular_component	GO:0016021	integral component of membrane