CcUC10G187220.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC10G187220.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr10: 1218009 .. 1218449 (-)
Sequence length	441
RNA-Seq Expression	CcUC10G187220.1
Synteny	CcUC10G187220.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGATCGATCTGTTTCTAGTAGAGCCCACCTTCAATGACGAACAGGATGTTGGCTCTGCGAAGTCGAGAATTTCTCTGTTAAGTAAATTAGAATCTGTTTTATGGAAGTTGCTGACTTCTGGAGGACGTTCTGAGGTTCGATTATGGCTTTCTAATACCATAGCTAGTGTGACATCTATCAGTCCCCAGCATCAGCGGGACCTGTTTATGGCATTACTGAGACGGAAGCCATTGAAGTGGGCCTTCGCATCTCAATTACTGCAAATGTTGTTTGAAAAGAGATCACGAGAGGCAGGGATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTGACTGTTCTGTTTACTCATTGTCAAATTTAGCTATAGCAATTCCAGCTGATAGCAAGAACACTCAACCGAATCTTCATTCTTTCAAATTGATTTAA

mRNA sequence

ATGATCGATCTGTTTCTAGTAGAGCCCACCTTCAATGACGAACAGGATGTTGGCTCTGCGAAGTCGAGAATTTCTCTGTTAAGTAAATTAGAATCTGTTTTATGGAAGTTGCTGACTTCTGGAGGACGTTCTGAGGTTCGATTATGGCTTTCTAATACCATAGCTAGTGTGACATCTATCAGTCCCCAGCATCAGCGGGACCTGTTTATGGCATTACTGAGACGGAAGCCATTGAAGTGGGCCTTCGCATCTCAATTACTGCAAATGTTGTTTGAAAAGAGATCACGAGAGGCAGGGATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTGACTGTTCTGTTTACTCATTGTCAAATTTAGCTATAGCAATTCCAGCTGATAGCAAGAACACTCAACCGAATCTTCATTCTTTCAAATTGATTTAA

Coding sequence (CDS)

ATGATCGATCTGTTTCTAGTAGAGCCCACCTTCAATGACGAACAGGATGTTGGCTCTGCGAAGTCGAGAATTTCTCTGTTAAGTAAATTAGAATCTGTTTTATGGAAGTTGCTGACTTCTGGAGGACGTTCTGAGGTTCGATTATGGCTTTCTAATACCATAGCTAGTGTGACATCTATCAGTCCCCAGCATCAGCGGGACCTGTTTATGGCATTACTGAGACGGAAGCCATTGAAGTGGGCCTTCGCATCTCAATTACTGCAAATGTTGTTTGAAAAGAGATCACGAGAGGCAGGGATTCTCATTGCTAAGAGAAGCTACATAATGGAAAATTTTTTCGAAGGTGACTGTTCTGTTTACTCATTGTCAAATTTAGCTATAGCAATTCCAGCTGATAGCAAGAACACTCAACCGAATCTTCATTCTTTCAAATTGATTTAA

Protein sequence

MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSISPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGDCSVYSLSNLAIAIPADSKNTQPNLHSFKLI

Homology

[Close]

BLAST of CcUC10G187220.1 vs. NCBI nr
Match: XP_008448630.1 (PREDICTED: uncharacterized protein LOC103490747 isoform X1 [Cucumis melo])

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGDCSVY 120
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEGDCSV 
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGDCSVC 140

Query: 121 SL-SNLAIAIPA 132
            L SNLAI I A
Sbjct: 141 LLMSNLAIEILA 152

[Close]

BLAST of CcUC10G187220.1 vs. NCBI nr
Match: KAA0053014.1 (uncharacterized protein E6C27_scaffold344G001260 [Cucumis melo var. makuwa] >TYK11470.1 uncharacterized protein E5676_scaffold139G001270 [Cucumis melo var. makuwa])

HSP 1 Score: 221.1 bits (562), Expect = 6.3e-54
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 1   MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 60

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGDCSVY 120
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEGDCSV 
Sbjct: 61  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGDCSVC 120

Query: 121 SL-SNLAIAIPA 132
            L SNLAI I A
Sbjct: 121 LLMSNLAIEILA 132

[Close]

BLAST of CcUC10G187220.1 vs. NCBI nr
Match: XP_038891380.1 (uncharacterized protein LOC120080808 [Benincasa hispida])

HSP 1 Score: 208.4 bits (529), Expect = 4.2e-50
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLFL+EP FNDEQDV SAK RISLLSKLESVLWKLLTSGGRSEVRLWL+N+IASVTSI
Sbjct: 1   MIDLFLLEPNFNDEQDVSSAKLRISLLSKLESVLWKLLTSGGRSEVRLWLTNSIASVTSI 60

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQRDLFM LLRRKP KWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEG+
Sbjct: 61  SPQHQRDLFMTLLRRKPFKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGN 116

[Close]

BLAST of CcUC10G187220.1 vs. NCBI nr
Match: XP_008448632.1 (PREDICTED: uncharacterized protein LOC103490747 isoform X2 [Cucumis melo])

HSP 1 Score: 207.2 bits (526), Expect = 9.5e-50
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEG+
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGN 136

[Close]

BLAST of CcUC10G187220.1 vs. NCBI nr
Match: XP_004146104.1 (uncharacterized protein LOC101206874 [Cucumis sativus] >KGN55716.1 hypothetical protein Csa_011038 [Cucumis sativus])

HSP 1 Score: 204.9 bits (520), Expect = 4.7e-49
Identity = 106/116 (91.38%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLFL E TFNDEQDV S K RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFLQESTFNDEQDVSSEKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEG+
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGN 136

[Close]

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL
Match: A0A5A7UCN7 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001270 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 1   MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 60

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGDCSVY 120
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEGDCSV 
Sbjct: 61  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGDCSVC 120

Query: 121 SL-SNLAIAIPA 132
            L SNLAI I A
Sbjct: 121 LLMSNLAIEILA 132

[Close]

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL
Match: A0A1S3BK58 (uncharacterized protein LOC103490747 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103490747 PE=4 SV=1)

HSP 1 Score: 221.1 bits (562), Expect = 3.1e-54
Identity = 118/132 (89.39%), Postives = 121/132 (91.67%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGDCSVY 120
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEGDCSV 
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGDCSVC 140

Query: 121 SL-SNLAIAIPA 132
            L SNLAI I A
Sbjct: 141 LLMSNLAIEILA 152

[Close]

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL
Match: A0A1S3BKS3 (uncharacterized protein LOC103490747 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103490747 PE=4 SV=1)

HSP 1 Score: 207.2 bits (526), Expect = 4.6e-50
Identity = 106/116 (91.38%), Postives = 110/116 (94.83%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLF++E TFNDEQDV SAK RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFILESTFNDEQDVSSAKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEG+
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGN 136

[Close]

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL
Match: A0A0A0L6D1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006760 PE=4 SV=1)

HSP 1 Score: 204.9 bits (520), Expect = 2.3e-49
Identity = 106/116 (91.38%), Postives = 108/116 (93.10%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLFL E TFNDEQDV S K RISLLS+LESVLWKLLT GGRSEVRLWLSNTIASVTSI
Sbjct: 21  MIDLFLQESTFNDEQDVSSEKLRISLLSELESVLWKLLTCGGRSEVRLWLSNTIASVTSI 80

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQRDLFM LLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIME FFEG+
Sbjct: 81  SPQHQRDLFMTLLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMEKFFEGN 136

[Close]

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL
Match: A0A6J1G8R1 (uncharacterized protein LOC111451855 OS=Cucurbita moschata OX=3662 GN=LOC111451855 PE=4 SV=1)

HSP 1 Score: 193.7 bits (491), Expect = 5.2e-46
Identity = 97/116 (83.62%), Postives = 103/116 (88.79%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDEQDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTSI 60
           MIDLFL EP FN+E DVGSAK RISLLS+LESVLWKLL SGGRSEVRLWLSNTIAS+TSI
Sbjct: 1   MIDLFLAEPVFNEEDDVGSAKLRISLLSRLESVLWKLLASGGRSEVRLWLSNTIASMTSI 60

Query: 61  SPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           SPQHQR+LFM  LR KPLKW FAS LLQM FEKR REAG+LIAKRSYIME FFEG+
Sbjct: 61  SPQHQRELFMTFLRSKPLKWDFASHLLQMFFEKRQREAGVLIAKRSYIMEKFFEGN 116

[Close]

BLAST of CcUC10G187220.1 vs. TAIR 10
Match: AT5G48340.1 (unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-25
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDE-QDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTS 60
           M++LFL EP +ND+ Q   +    + LL+KL S +  L+T G RSE RLWL + ++++ S
Sbjct: 1   MVNLFLSEPKWNDDAQKSSNINVILPLLNKLGSQIQSLVTHGARSEARLWLCSALSTI-S 60

Query: 61  ISPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           ISP  Q ++FM LLR KP K  F SQ+L M+FEKR R+ G L+AKRSYI+E FFEG+
Sbjct: 61  ISPSKQLNIFMKLLRSKPRKMQFLSQVLTMMFEKRPRKLGFLLAKRSYILEKFFEGN 116

[Close]

BLAST of CcUC10G187220.1 vs. TAIR 10
Match: AT5G48340.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages. )

HSP 1 Score: 111.3 bits (277), Expect = 6.6e-25
Identity = 60/117 (51.28%), Postives = 82/117 (70.09%), Query Frame = 0


Query: 1   MIDLFLVEPTFNDE-QDVGSAKSRISLLSKLESVLWKLLTSGGRSEVRLWLSNTIASVTS 60
           M++LFL EP +ND+ Q   +    + LL+KL S +  L+T G RSE RLWL + ++++ S
Sbjct: 1   MVNLFLSEPKWNDDAQKSSNINVILPLLNKLGSQIQSLVTHGARSEARLWLCSALSTI-S 60

Query: 61  ISPQHQRDLFMALLRRKPLKWAFASQLLQMLFEKRSREAGILIAKRSYIMENFFEGD 117
           ISP  Q ++FM LLR KP K  F SQ+L M+FEKR R+ G L+AKRSYI+E FFEG+
Sbjct: 61  ISPSKQLNIFMKLLRSKPRKMQFLSQVLTMMFEKRPRKLGFLLAKRSYILEKFFEGN 116

The following BLAST results are available for this feature:

BLAST of CcUC10G187220.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448630.1	6.3e-54	89.39	PREDICTED: uncharacterized protein LOC103490747 isoform X1 [Cucumis melo]	[more]
KAA0053014.1	6.3e-54	89.39	uncharacterized protein E6C27_scaffold344G001260 [Cucumis melo var. makuwa] >TYK...	[more]
XP_038891380.1	4.2e-50	91.38	uncharacterized protein LOC120080808 [Benincasa hispida]	[more]
XP_008448632.1	9.5e-50	91.38	PREDICTED: uncharacterized protein LOC103490747 isoform X2 [Cucumis melo]	[more]
XP_004146104.1	4.7e-49	91.38	uncharacterized protein LOC101206874 [Cucumis sativus] >KGN55716.1 hypothetical ...	[more]

BLAST of CcUC10G187220.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC10G187220.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7UCN7	3.1e-54	89.39	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BK58	3.1e-54	89.39	uncharacterized protein LOC103490747 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A1S3BKS3	4.6e-50	91.38	uncharacterized protein LOC103490747 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0L6D1	2.3e-49	91.38	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006760 PE=4 SV=1	[more]
A0A6J1G8R1	5.2e-46	83.62	uncharacterized protein LOC111451855 OS=Cucurbita moschata OX=3662 GN=LOC1114518...	[more]

BLAST of CcUC10G187220.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G48340.1	6.6e-25	51.28	unknown protein; Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0...	[more]
AT5G48340.2	6.6e-25	51.28	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR37766	OS01G0897100 PROTEIN	coord: 1..116

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC10G187220	CcUC10G187220	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G187220.1-exon	CcUC10G187220.1-exon-CicolChr10:1218009..1218449	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC10G187220.1-cds	CcUC10G187220.1-cds-CicolChr10:1218009..1218449	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC10G187220.1	CcUC10G187220.1-protein	polypeptide