CcUC08G149780.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC08G149780.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	zinc_ribbon_15 domain-containing protein
Location	CicolChr08: 17555478 .. 17555816 (-)
Sequence length	339
RNA-Seq Expression	CcUC08G149780.1
Synteny	CcUC08G149780.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTTCTTCTTCTTTGTCGGAGGCTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTGACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAA

mRNA sequence

ATGTTCTTCTTCTTTGTCGGAGGCTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTGACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAA

Coding sequence (CDS)

ATGTTCTTCTTCTTTGTCGGAGGCTTAGAGCAACAAGTTCGCCAACTCCTCAAATCCAGTGCCGGCCGATGTATAAACTGCAACTCCCCCGCTGATCTCGTTGACTACGAGAAAGTTCTCAAGCTCTTCTTTGTTCCCGTGTGGCGGTGGCCGGGAAAAGAGCCATTGATGCACTGCAACAACTGTAAGCTTTTTTTCCCTCAGTCCTTCTCTCCGCCGCCAATTTCCGATCAATCGTCTCCATCAGCCGCTCTTTTAAGAGCCCTTCGTTGCCGTTCTTGCAACAAAATTGTGGAACCCGACTTCAGCTTCTGCCCTTACTGTGGCTCTTCTCTATAA

Protein sequence

MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCNNCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL

Homology

[Close]

BLAST of CcUC08G149780.1 vs. NCBI nr
Match: XP_038884584.1 (uncharacterized protein LOC120075351 [Benincasa hispida])

HSP 1 Score: 238.4 bits (607), Expect = 2.9e-59
Identity = 105/112 (93.75%), Postives = 110/112 (98.21%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL+QQVRQ++KSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLQQQVRQIIKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQSFSPPPISDQS PSAALLRAL CRSCN++VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSFSPPPISDQSLPSAALLRALHCRSCNRVVEPDFSFCPYCGSSL 112

[Close]

BLAST of CcUC08G149780.1 vs. NCBI nr
Match: XP_022962458.1 (uncharacterized protein LOC111462885 [Cucurbita moschata])

HSP 1 Score: 230.7 bits (587), Expect = 6.1e-57
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFP+SFSPPPISDQ  PSAALLRALRC SCNK+VEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of CcUC08G149780.1 vs. NCBI nr
Match: XP_023541925.1 (uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 229.6 bits (584), Expect = 1.4e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFP+SFSPPPISDQ  PSAALLRALRC SCNK+VEPDFSFCP+CGSS+
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSV 112

[Close]

BLAST of CcUC08G149780.1 vs. NCBI nr
Match: KAG7016486.1 (hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFPQSFSPPPISDQS+P A L R LRCRSCNK+VEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPQSFSPPPISDQSTPPATLSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of CcUC08G149780.1 vs. NCBI nr
Match: XP_022992997.1 (uncharacterized protein LOC111489157 [Cucurbita maxima])

HSP 1 Score: 229.2 bits (583), Expect = 1.8e-56
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS+AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP+SFSPPPISDQS+P AAL R LRCRSCNK+VEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL
Match: A0A6J1HEV4 (uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC111462885 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 3.0e-57
Identity = 102/112 (91.07%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR LLK+ AGRCI+CNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRHLLKAGAGRCISCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFP+SFSPPPISDQ  PSAALLRALRC SCNK+VEPDFSFCP+CGSSL
Sbjct: 61  NCKLFFPRSFSPPPISDQLPPSAALLRALRCHSCNKVVEPDFSFCPFCGSSL 112

[Close]

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL
Match: A0A6J1JRI4 (uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157 PE=4 SV=1)

HSP 1 Score: 229.2 bits (583), Expect = 8.6e-57
Identity = 101/112 (90.18%), Postives = 107/112 (95.54%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS+AGRCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSAAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP+SFSPPPISDQS+P AAL R LRCRSCNK+VEPDFSFCP+CG SL
Sbjct: 61  NCNLFFPRSFSPPPISDQSTPPAALSRTLRCRSCNKVVEPDFSFCPFCGFSL 112

[Close]

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL
Match: A0A6J1FFV9 (uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC111445104 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 3.3e-56
Identity = 101/112 (90.18%), Postives = 106/112 (94.64%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NC LFFP SFSPPPISDQS+P AA  R LRCRSCNK+VEP+FSFCP+CGSSL
Sbjct: 61  NCNLFFPPSFSPPPISDQSTPPAAPSRTLRCRSCNKVVEPNFSFCPFCGSSL 112

[Close]

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL
Match: A0A0A0KDD6 (zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385100 PE=4 SV=1)

HSP 1 Score: 224.2 bits (570), Expect = 2.8e-55
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVR+LLKS A RCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRRLLKSGAARCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQS SPP  SDQS+ SA LLRALRCRSCNK+VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQST-SATLLRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL
Match: A0A5A7V2D0 (zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold184G001160 PE=4 SV=1)

HSP 1 Score: 223.4 bits (568), Expect = 4.7e-55
Identity = 102/112 (91.07%), Postives = 105/112 (93.75%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGLEQQVRQLLKS A RCINC+SPADLV+YEKVLKLFFVPVWRWPGKEPLMHCN
Sbjct: 1   MFFFFVGGLEQQVRQLLKSGAARCINCDSPADLVNYEKVLKLFFVPVWRWPGKEPLMHCN 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           NCKLFFPQS SPP  SDQ SPSAAL RALRCRSCNK+VEPDFSFCPYCGSSL
Sbjct: 61  NCKLFFPQSLSPPSFSDQ-SPSAALSRALRCRSCNKVVEPDFSFCPYCGSSL 111

[Close]

BLAST of CcUC08G149780.1 vs. TAIR 10
Match: AT1G44414.1 (unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bacteria - 4; Metazoa - 0; Fungi - 0; Plants - 25; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 171.0 bits (432), Expect = 5.4e-43
Identity = 74/112 (66.07%), Postives = 87/112 (77.68%), Query Frame = 0


Query: 1   MFFFFVGGLEQQVRQLLKSSAGRCINCNSPADLVDYEKVLKLFFVPVWRWPGKEPLMHCN 60
           MFFFFVGGL QQVRQ+LKS AG CI C S ADLV+Y+KV+KLFFVPVWRWPGK+PL+HC 
Sbjct: 1   MFFFFVGGLGQQVRQVLKSGAGTCIRCGSQADLVEYDKVIKLFFVPVWRWPGKDPLLHCR 60

Query: 61  NCKLFFPQSFSPPPISDQSSPSAALLRALRCRSCNKIVEPDFSFCPYCGSSL 113
           +C LFFPQS SPPP+S              CR C+++VEP+F FCP+CGSSL
Sbjct: 61  DCDLFFPQSLSPPPVS-----------LATCRFCDRVVEPEFRFCPFCGSSL 101

The following BLAST results are available for this feature:

BLAST of CcUC08G149780.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038884584.1	2.9e-59	93.75	uncharacterized protein LOC120075351 [Benincasa hispida]	[more]
XP_022962458.1	6.1e-57	91.07	uncharacterized protein LOC111462885 [Cucurbita moschata]	[more]
XP_023541925.1	1.4e-56	90.18	uncharacterized protein LOC111801919 [Cucurbita pepo subsp. pepo]	[more]
KAG7016486.1	1.8e-56	90.18	hypothetical protein SDJN02_21595, partial [Cucurbita argyrosperma subsp. argyro...	[more]
XP_022992997.1	1.8e-56	90.18	uncharacterized protein LOC111489157 [Cucurbita maxima]	[more]

BLAST of CcUC08G149780.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC08G149780.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HEV4	3.0e-57	91.07	uncharacterized protein LOC111462885 OS=Cucurbita moschata OX=3662 GN=LOC1114628...	[more]
A0A6J1JRI4	8.6e-57	90.18	uncharacterized protein LOC111489157 OS=Cucurbita maxima OX=3661 GN=LOC111489157...	[more]
A0A6J1FFV9	3.3e-56	90.18	uncharacterized protein LOC111445104 OS=Cucurbita moschata OX=3662 GN=LOC1114451...	[more]
A0A0A0KDD6	2.8e-55	91.07	zinc_ribbon_15 domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_6G385...	[more]
A0A5A7V2D0	4.7e-55	91.07	zinc_ribbon_15 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]

BLAST of CcUC08G149780.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G44414.1	5.4e-43	66.07	unknown protein; Has 29 Blast hits to 29 proteins in 12 species: Archae - 0; Bac...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR031493	Zinc-ribbon 15	PFAM	PF17032	zinc_ribbon_15	coord: 23..109 e-value: 2.2E-23 score: 82.8
None	No IPR available	PANTHER	PTHR36718	OS05G0435400 PROTEIN	coord: 1..112

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC08G149780	CcUC08G149780	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G149780.1-exon	CcUC08G149780.1-exon-CicolChr08:17555478..17555816	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC08G149780.1-cds	CcUC08G149780.1-cds-CicolChr08:17555478..17555816	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC08G149780.1	CcUC08G149780.1-protein	polypeptide