CcUC06G122450.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122450.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	50S ribosomal protein L35
Location	CicolChr06: 24821494 .. 24822780 (-)
Sequence length	534
RNA-Seq Expression	CcUC06G122450.1
Synteny	CcUC06G122450.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTTTCCCCATTGAGAGCTCGCCCATCAGTTCGCGTCTCTCATAGTTCCGTCGGGCTAGCTTCGTGCAACAAGGTGAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTATGGAGTCGCCTTCCTTCAGAAGCCGTCTCACATTACTACCACTTCTCAAAGTCATAGTCCTTTCACTGTGTTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGTCTCTCCTCTCTATATTTTTGTATGGTTCAATTCTGGTTGAATTCTGATTAATTTTGAAGTTAATTTCAGTCTTCTAGGTAGTTTGAACATGTTCAGGGTTTATTTTAATCGAATTTGTATTATGATTCGAGAATGATAGGTTAAATTTTAAATTCCCTTTGAAGTACCCAATTCTAGATGCTTACTGAATGAGCTAATATCAGTACAAATTTTTAAACCATACGCGCCTTTCTTCTCTGTCTTCTACTGGGACTTTCCCCTTTTTCTTTTGATTTTATTGTTTGGTGATACTGTGTAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATAGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGGTATGTCCTCTTTATTTATTATTTTCATGACTCTGTATCTGTTATGCGGCATTTCTAAACTTGGGTCCTTGAGTTTTTCTGGGAGAGGGTTCATATGAATGGATCAAAACTTTGCCAATATAGTCACTATTTTCAATCTCTATGATCACTCGACAAGTTATCTACCAATCTCCTTTTCTTGAGTGTAAGTTATTAGTGCAGTTCTGTGAAGAATCTTATCAAAGTTGGAATGTTCTTCATCATTTGATTCAATCCCAATCATACTGTAAGCTAATGGCAAGCATTCCAACTAAATTAAGTTTGTTTTGAAAGTACGATCTAATTTGAAGTTATTCATCGGTTGTCATAGTTTGTTCAGACAATAATCCCTAGAGCTATCAGTGATGGTGATCTTGAAGATTTTCACATAGAACATTTAGGAAACAAGTTTTGTTTTGGTTTGATATTCTTAAGTGCCCAAGACCGTCCATGAACTATAAGTGCAAGAAAATATATTTGGAAAGAGCTTCCACATACATACCTTTGGTTTTGAATCTTCAGAATTCAGTCTTCTTACTTGCCCTGTGGGCATATATACCTTTTGCATTTGTATCATGTAGCAACGGTTAA

mRNA sequence

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTTTCCCCATTGAGAGCTCGCCCATCAGTTCGCGTCTCTCATAGTTCCGTCGGGCTAGCTTCGTGCAACAAGGTGAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTATGGAGTCGCCTTCCTTCAGAAGCCGTCTCACATTACTACCACTTCTCAAAGTCATAGTCCTTTCACTGTGTTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATAGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGTGCCCAAGACCGTCCATGAACTATAAGTGCAAGAAAATATATTTGGAAAGAGCTTCCACATACATACCTTTGGTTTTGAATCTTCAGAATTCAGTCTTCTTACTTGCCCTGTGGGCATATATACCTTTTGCATTTGTATCATGTAGCAACGGTTAA

Coding sequence (CDS)

ATGGCATCTGCTTCAATGGCGGTGTCCTTTGGTCTTAGGTTTTCCCCATTGAGAGCTCGCCCATCAGTTCGCGTCTCTCATAGTTCCGTCGGGCTAGCTTCGTGCAACAAGGTGAATTCCTTGAAGCTTAGTTCCTCCCACAACATTTCCGGCTATGGAGTCGCCTTCCTTCAGAAGCCGTCTCACATTACTACCACTTCTCAAAGTCATAGTCCTTTCACTGTGTTCGCTGCTAAAGGCTACAAAATGAAAACCCACAAGGCTTCGGCGAAGCGATTCAGAGTAACGGGTCGGGGGAAAATAGTTCGGAGGAGAGCTGGAAAGCAGCATTTGCTGTACAAGAAGAACGCAAAGAGGAGATTACGGCTTTCCAAAATGTGCCCAAGACCGTCCATGAACTATAAGTGCAAGAAAATATATTTGGAAAGAGCTTCCACATACATACCTTTGGTTTTGAATCTTCAGAATTCAGTCTTCTTACTTGCCCTGTGGGCATATATACCTTTTGCATTTGTATCATGTAGCAACGGTTAA

Protein sequence

MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKPSHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSKMCPRPSMNYKCKKIYLERASTYIPLVLNLQNSVFLLALWAYIPFAFVSCSNG

Homology

[Close]

BLAST of CcUC06G122450.1 vs. NCBI nr
Match: XP_008443834.1 (PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo])

HSP 1 Score: 213.0 bits (541), Expect = 2.1e-51
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVGLAS NKVNSLKLSSSHNISG+G+ FLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ H+PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSK+ P    +Y
Sbjct: 121 LRLSKLHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. NCBI nr
Match: KAA0035109.1 (50S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal protein L35 [Cucumis melo var. makuwa])

HSP 1 Score: 209.1 bits (531), Expect = 3.0e-50
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVGLAS NKVNSLKLSSSHNISG+G+ FLQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ H+PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSK+ P    +Y
Sbjct: 121 LRLSKLHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. NCBI nr
Match: XP_038878434.1 (50S ribosomal protein L35, chloroplastic [Benincasa hispida])

HSP 1 Score: 207.6 bits (527), Expect = 8.8e-50
Identity = 114/134 (85.07%), Postives = 120/134 (89.55%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVS GLRFSPL +RPSVRVSHSSVGLAS NK NSLKLSSS+NISG+GV FLQKP
Sbjct: 1   MASASMAVSCGLRFSPLYSRPSVRVSHSSVGLASFNKGNSLKLSSSNNISGFGVTFLQKP 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ T Q H+PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KRR
Sbjct: 61  SHISPTPQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSKM P    +Y
Sbjct: 121 LRLSKMHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. NCBI nr
Match: XP_004146668.1 (50S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypothetical protein Csa_019888 [Cucumis sativus])

HSP 1 Score: 203.4 bits (516), Expect = 1.7e-48
Identity = 112/134 (83.58%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVG+AS NKVNSLKLSSSHNISG+G   LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ  +PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSKM P    +Y
Sbjct: 121 LRLSKMHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. NCBI nr
Match: XP_022135558.1 (50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 3.6e-43
Identity = 106/135 (78.52%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASC-NKVNSLKLSSSHNISGYGVAFLQK 60
           MASAS  VSFGLRFSPL +RPSVRVSH SV LAS  NKVNSL+L SS NISG+GVA LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120
             HI  TSQ H+P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMCPRPSMNY 135
           +LRLSKM P    +Y
Sbjct: 121 KLRLSKMHPVSRSDY 135

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot
Match: Q8VZ55 (50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 103.6 bits (257), Expect = 2.3e-21
Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 1   MASASMAVSFGLRF-SPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQK 60
           MAS SMA S  + F  PLR+        SSV  A+        LSSSH+ISG       K
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PSHITT-TSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAK 120
            S + +  SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RRLRLSKM 127
           R+LRLSKM
Sbjct: 121 RKLRLSKM 120

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot
Match: P23326 (50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 PE=1 SV=1)

HSP 1 Score: 100.9 bits (250), Expect = 1.5e-20
Identity = 77/137 (56.20%), Postives = 89/137 (64.96%), Query Frame = 0


Query: 1   MASASMAVSF---GLRFSPLRARPSVRVSHS-SVGLASCNK--VNSLKLSSSHNISGYGV 60
           MASA+  +SF    L  SP    PS R S +  + L   NK   ++L LSSS +IS   V
Sbjct: 3   MASATATLSFKTPSLSLSP----PSTRCSAAQGISLTHFNKQLKSTLNLSSSSSISSSKV 62

Query: 61  -AFLQKPSHITT----TSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQ 120
              + K   I+T     S S   FTVFAAKGYKMKTHKASAKRFRVTG+GKIVRRRAGKQ
Sbjct: 63  QPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTHKASAKRFRVTGKGKIVRRRAGKQ 122

Query: 121 HLLYKKNAKRRLRLSKM 127
           HLL KKN KR+ RLSK+
Sbjct: 123 HLLAKKNTKRKNRLSKL 135

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot
Match: Q31NR1 (50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-805) OX=1140 GN=rpmI PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSK 126
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot
Match: Q5N5F4 (50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) OX=269084 GN=rpmI PE=3 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 3.6e-06
Identity = 28/44 (63.64%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSK 126
           K+KT KA+AKRFR++G GK +RR+A K HLL  KNA RR RLS+
Sbjct: 3   KLKTRKAAAKRFRISGNGKAIRRKAFKNHLLQHKNATRRRRLSQ 46

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot
Match: B2J0D1 (50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) OX=63737 GN=rpmI PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 1.1e-05
Identity = 27/44 (61.36%), Postives = 35/44 (79.55%), Query Frame = 0


Query: 82  KMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRRLRLSK 126
           K+KT KA+AKRFR TG GKIVRR+AGK HLL  K++ ++  +SK
Sbjct: 3   KLKTRKAAAKRFRATGTGKIVRRKAGKSHLLEHKSSDKKRSMSK 46

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL
Match: A0A1S3B9R8 (50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1)

HSP 1 Score: 213.0 bits (541), Expect = 1.0e-51
Identity = 115/134 (85.82%), Postives = 123/134 (91.79%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVGLAS NKVNSLKLSSSHNISG+G+ FLQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKP 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ H+PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSK+ P    +Y
Sbjct: 121 LRLSKLHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL
Match: A0A5D3B7R7 (50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold271G00400 PE=3 SV=1)

HSP 1 Score: 209.1 bits (531), Expect = 1.5e-50
Identity = 114/134 (85.07%), Postives = 122/134 (91.04%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVGLAS NKVNSLKLSSSHNISG+G+ FLQK 
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGLASFNKVNSLKLSSSHNISGFGLNFLQKL 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ H+PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR
Sbjct: 61  SHISPTSQIHTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSK+ P    +Y
Sbjct: 121 LRLSKLHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL
Match: A0A0A0LYX0 (50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1)

HSP 1 Score: 203.4 bits (516), Expect = 8.0e-49
Identity = 112/134 (83.58%), Postives = 119/134 (88.81%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQKP 60
           MASASMAVSFGLRFSPL +RPS RVSH+SVG+AS NKVNSLKLSSSHNISG+G   LQKP
Sbjct: 1   MASASMAVSFGLRFSPLCSRPSFRVSHTSVGIASVNKVNSLKLSSSHNISGFGFNSLQKP 60

Query: 61  SHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKRR 120
           SHI+ TSQ  +PFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLL KKNAKRR
Sbjct: 61  SHISPTSQIRTPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLCKKNAKRR 120

Query: 121 LRLSKMCPRPSMNY 135
           LRLSKM P    +Y
Sbjct: 121 LRLSKMHPVSRSDY 134

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL
Match: A0A6J1C550 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.7e-43
Identity = 106/135 (78.52%), Postives = 112/135 (82.96%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASC-NKVNSLKLSSSHNISGYGVAFLQK 60
           MASAS  VSFGLRFSPL +RPSVRVSH SV LAS  NKVNSL+L SS NISG+GVA LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120
             HI  TSQ H+P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKMCPRPSMNY 135
           +LRLSKM P    +Y
Sbjct: 121 KLRLSKMHPVSRSDY 135

[Close]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL
Match: A0A6J1C1S3 (50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 8.6e-43
Identity = 104/127 (81.89%), Postives = 109/127 (85.83%), Query Frame = 0


Query: 1   MASASMAVSFGLRFSPLRARPSVRVSHSSVGLASC-NKVNSLKLSSSHNISGYGVAFLQK 60
           MASAS  VSFGLRFSPL +RPSVRVSH SV LAS  NKVNSL+L SS NISG+GVA LQK
Sbjct: 1   MASASTTVSFGLRFSPLCSRPSVRVSHGSVRLASSFNKVNSLRLGSSPNISGFGVALLQK 60

Query: 61  PSHITTTSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAKR 120
             HI  TSQ H+P TV AAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKN KR
Sbjct: 61  SFHIAPTSQVHTPLTVVAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNTKR 120

Query: 121 RLRLSKM 127
           +LRLSKM
Sbjct: 121 KLRLSKM 127

[Close]

BLAST of CcUC06G122450.1 vs. TAIR 10
Match: AT2G24090.1 (Ribosomal protein L35 )

HSP 1 Score: 103.6 bits (257), Expect = 1.7e-22
Identity = 76/128 (59.38%), Postives = 84/128 (65.62%), Query Frame = 0


Query: 1   MASASMAVSFGLRF-SPLRARPSVRVSHSSVGLASCNKVNSLKLSSSHNISGYGVAFLQK 60
           MAS SMA S  + F  PLR+        SSV  A+        LSSSH+ISG       K
Sbjct: 1   MASLSMA-SVNVSFCHPLRSSSPKVSLRSSVHFAT-------SLSSSHSISGLRAVLPLK 60

Query: 61  PSHITT-TSQSHSPFTVFAAKGYKMKTHKASAKRFRVTGRGKIVRRRAGKQHLLYKKNAK 120
            S + +  SQ    FTVFA KGYKMKTHKASAKRFRVTGRGKIVRRR+GKQHLL KKN K
Sbjct: 61  ISTVASPNSQKLHSFTVFAHKGYKMKTHKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNK 120

Query: 121 RRLRLSKM 127
           R+LRLSKM
Sbjct: 121 RKLRLSKM 120

The following BLAST results are available for this feature:

BLAST of CcUC06G122450.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008443834.1	2.1e-51	85.82	PREDICTED: 50S ribosomal protein L35, chloroplastic [Cucumis melo]	[more]
KAA0035109.1	3.0e-50	85.07	50S ribosomal protein L35 [Cucumis melo var. makuwa] >TYJ95970.1 50S ribosomal p...	[more]
XP_038878434.1	8.8e-50	85.07	50S ribosomal protein L35, chloroplastic [Benincasa hispida]	[more]
XP_004146668.1	1.7e-48	83.58	50S ribosomal protein L35, chloroplastic [Cucumis sativus] >KGN65186.1 hypotheti...	[more]
XP_022135558.1	3.6e-43	78.52	50S ribosomal protein L35, chloroplastic isoform X1 [Momordica charantia]	[more]

BLAST of CcUC06G122450.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q8VZ55	2.3e-21	59.38	50S ribosomal protein L35, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RPL3...	[more]
P23326	1.5e-20	56.20	50S ribosomal protein L35, chloroplastic OS=Spinacia oleracea OX=3562 GN=RPL35 P...	[more]
Q31NR1	3.6e-06	63.64	50S ribosomal protein L35 OS=Synechococcus elongatus (strain PCC 7942 / FACHB-80...	[more]
Q5N5F4	3.6e-06	63.64	50S ribosomal protein L35 OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / S...	[more]
B2J0D1	1.1e-05	61.36	50S ribosomal protein L35 OS=Nostoc punctiforme (strain ATCC 29133 / PCC 73102) ...	[more]

BLAST of CcUC06G122450.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B9R8	1.0e-51	85.82	50S ribosomal protein L35 OS=Cucumis melo OX=3656 GN=LOC103487333 PE=3 SV=1	[more]
A0A5D3B7R7	1.5e-50	85.07	50S ribosomal protein L35 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A0A0LYX0	8.0e-49	83.58	50S ribosomal protein L35 OS=Cucumis sativus OX=3659 GN=Csa_1G257920 PE=3 SV=1	[more]
A0A6J1C550	1.7e-43	78.52	50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV...	[more]
A0A6J1C1S3	8.6e-43	81.89	50S ribosomal protein L35 OS=Momordica charantia OX=3673 GN=LOC111007484 PE=3 SV...	[more]

BLAST of CcUC06G122450.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G24090.1	1.7e-22	59.38	Ribosomal protein L35	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001706	Ribosomal protein L35, non-mitochondrial	PRINTS	PR00064	RIBOSOMALL35	coord: 100..114 score: 48.25 coord: 115..133 score: 22.81 coord: 82..99 score: 61.11
IPR001706	Ribosomal protein L35, non-mitochondrial	TIGRFAM	TIGR00001	TIGR00001	coord: 81..126 e-value: 4.7E-17 score: 60.0
IPR001706	Ribosomal protein L35, non-mitochondrial	PANTHER	PTHR33343	54S RIBOSOMAL PROTEIN BL35M	coord: 25..137
IPR001706	Ribosomal protein L35, non-mitochondrial	HAMAP	MF_00514	Ribosomal_L35	coord: 80..143 score: 13.574546
IPR037229	Ribosomal protein L35 superfamily	GENE3D	4.10.410.60		coord: 82..141 e-value: 3.3E-15 score: 58.4
IPR037229	Ribosomal protein L35 superfamily	SUPERFAMILY	143034	L35p-like	coord: 81..141
IPR021137	Ribosomal protein L35	PFAM	PF01632	Ribosomal_L35p	coord: 81..126 e-value: 2.7E-16 score: 59.8
IPR018265	Ribosomal protein L35, conserved site	PROSITE	PS00936	RIBOSOMAL_L35	coord: 84..110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G122450	CcUC06G122450	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122450.1-exon	CcUC06G122450.1-exon-CicolChr06:24821494..24821649	exon
CcUC06G122450.1-exon	CcUC06G122450.1-exon-CicolChr06:24822103..24822219	exon
CcUC06G122450.1-exon	CcUC06G122450.1-exon-CicolChr06:24822520..24822780	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122450.1-cds	CcUC06G122450.1-cds-CicolChr06:24821494..24821649	CDS
CcUC06G122450.1-cds	CcUC06G122450.1-cds-CicolChr06:24822103..24822219	CDS
CcUC06G122450.1-cds	CcUC06G122450.1-cds-CicolChr06:24822520..24822780	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G122450.1	CcUC06G122450.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006412	translation
cellular_component	GO:0005840	ribosome
cellular_component	GO:0015934	large ribosomal subunit
molecular_function	GO:0003735	structural constituent of ribosome
molecular_function	GO:0003729	mRNA binding