CcUC06G122200.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G122200.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 24586380 .. 24589041 (+)
Sequence length	880
RNA-Seq Expression	CcUC06G122200.1
Synteny	CcUC06G122200.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GTTTCTGCTTTCTTGCTGTCGTCGTCGTCGCAGTCCCCGTCGCCCGTCGTCCCCCACCACCGCCCCCACTTGGCCCGTGCTATCGGTGTGAGGCGACATTGGGCAAAAGTGGCAACCGCGGTTGCAAAAAGAACGAAAAAGCCGGCTCTACAAACTGTTTTTGCTGGGCAAGCAACAACTGCTCTTCCCCTTTCACAGGCCCTTCTACTTTTGTTGGCCCTTCCACTTCCGTTGGCTCTTCTATTTCCGTTGGCCCTTCTACTTCCGTCAGCCCTTCATGTCAGCACCCAAACGCAGATGCTCATGCATCGACTTTGGGTGCAGAAGAGACAGAATCCCTGCAATGAGAGGTGTGCCTGTTACGGGAGCATCGGCCGAAATCCCCACCAGCATGATGACAATAAAGGAAAGAAAGGTAAAGAAAAATGTAGAAAGAAGGCAGAAAGAACCCGGTATTTTCTTTTTCTTCCATCCTTTTCTGTATAGCATCTACATGAGCTTAGTAGAATCGGTGACAAGATTGAATTGAGGGTACACTGGACGGAGTGTGAGAAAAAAATTTAGGTGAAAAGGGTACTTTTAAAAAATTAGGGAAATAAGGTAGTTTTTTTTTTTTTTTTTTTTCTTTTTCTAATAATGCCAGAAACCTAATTCCGTCCCGGTAAATTCGAACTTACTAGGAAGGAATCAGCTCTATGTAACTTTTCCCACCACTTTACAGAAAAAGTGAAAGAGTCTAATTCATTCCTAGGCTGTTTGCTTTTTTCCTAGTAAGTTCTCTATTCCTTTCCTTCTAACCTTTTTATTTTTCAATGAAGTTGTTTTTGTAAGATTCTAAAATTAAATTCAAATCTTCTAACAATTCCTTCCAACAAGTTGAAATCTTCTTCCAACAAGTTGAAACTTGATTTTTATAATAATTAATAATTAATTTTAATTTTAATAATTCATTTTTCATTAAAATAATGATTTTTATATATATAAAAAGTCCATGTCCATTTTTCCAATATTGAAAAAATGGTACCAAGAAAATGGATAGAATATATTTTTTCAATTAATAATTCACATTAACATTAAAAAATCAATAAAACATAAAACTTAACGCCAGATGCGTCAAAAGCAAACGAAACTTTTTTTCTGACCATGCTTCATCGTACTTTTCTCTTTGACCGAGTTTGAGTGCGTCTTTTCAAGCTAACACTCAAATAAAAGACAAAAAAAAAAAAAAAAAAGAAACTACATTTTTACCTAATTTTTTTTTCCAAACTAACATTTTTACCTAATTTTTTAAAAAGTACCATTTTCTTTCTAATTAACCCTTAGATGGAGTCTGTAGAGGCGTGAGAAATCTTCTTTTAAGAGTCTTTCAATCCTTTCTTTTTTTGGGCCTAGATTGTGATTCGCAGGGTCTTCGGGCATGAATTGTATTTTTGAGGATTTTTGTCCAAGGATGAAAGCCCTGACGTAGCGGAAAAGCACATAAAACCAAACTTCAAAATTTAAATTTAGAATTATGAAATACAAATACATTGGCAATTCAACTGAATAAAGCTAGATTAAGCATGTAATTCCGAAAAGAAATATAACCTTTTGAAATCGATTTGGAACACTGTTGCGCAATTCACTCCCAATTTTCTTCGGAAGAATTGAGGATTTGTAATTTGTGGGAACCAACCTTGAAAATTTGAGAAAAATGACATAATTGTTTTGACCTAGATTTTTTTTGCTCAGCTTAATCAACCTAGGAGAGAAGCGATCACTCCACCTCTCACATAACTCCACTACTTGGGAGTTATTTGTTTTTATTTATTTAATTAAATAAAAATCAAATTACCCATGTATTTAAGGATAAATTTGCAGCCTACATATTTCTCTCTCAATTGGAACTTGGAAGTGGCTCTCTCTCGACTTGACGAACCTCACTCACCAGCTTCGACCTTCAAATTTCTACTTGGTATTACTTTCTTTTCCTTCTATCTTTGACTATCTTAGCTTCTCATACTCATTCTACTACAATGAATCTTGTAGTTTATGCGAATTTCGAATTGGACGAACCATTTCCACTTTCGCGATTTATGTGTTTCGACTTTACAAAATGAACTCCAGTTTGCTAAGTTTTGACGTTGTTTGATGAAGCAACTCATTGTGTTGTGTGTACTGCAGTTGACTTGAAATGCAACCTTTCAATTATTTTGCTGCTGTCCTGTTTTTTATCCTCTTTGGCTGTTTGACAGTCTATTGAAGTGGGAAAAAGAAGAAGAAGAAGAAGAAAAGTGCCGCTGCTGGGAAGAATAGTTAGCAGCAGGGATTCTGGTGTTTGAGAAGGGAAATTGATGTTTTTGAAGAAGAATTCGCAGCAAATCAAACCGTTGGTGAGCTTTCTTTTTCAACATTATTGACTGCAGCAGATTGTTTCATATTGGGAGAGATTAGGAGAGGGAGATGATAGTCAAGGATAGCCACTGATAGCAGCTGTGCTGTCAATGATAACTTTCGATTTGATAAAAATTGGAGGAAGTTGGAGTGTGCGAAAATTAGTGATTCTGGTTTTTTATTTGGTGGGATGAGCAAAATTATTGGGGTTGTTTTTTAGTCTTTCCCAATATATGGGCCTATTTTTGTGCTATATCTACAAACTTTTTATGATTGTGTTGCATATGCT

mRNA sequence

GTTTCTGCTTTCTTGCTGTCGTCGTCGTCGCAGTCCCCGTCGCCCGTCGTCCCCCACCACCGCCCCCACTTGGCCCGTGCTATCGGTGTGAGGCGACATTGGGCAAAAGTGGCAACCGCGGTTGCAAAAAGAACGAAAAAGCCGGCTCTACAAACTGTTTTTGCTGGGCAAGCAACAACTGCTCTTCCCCTTTCACAGGCCCTTCTACTTTTGTTGGCCCTTCCACTTCCGTTGGCTCTTCTATTTCCGTTGGCCCTTCTACTTCCGTCAGCCCTTCATGTCAGCACCCAAACGCAGATGCTCATGCATCGACTTTGGGTGCAGAAGAGACAGAATCCCTGCAATGAGAGGTGTGCCTGTTACGGGAGCATCGGCCGAAATCCCCACCAGCATGATGACAATAAAGGAAAGAAAGGTAAAGAAAAATGTAGAAAGAAGGCAGAAAGAACCCGTCTATTGAAGTGGGAAAAAGAAGAAGAAGAAGAAGAAAAGTGCCGCTGCTGGGAAGAATAGTTAGCAGCAGGGATTCTGGTGTTTGAGAAGGGAAATTGATGTTTTTGAAGAAGAATTCGCAGCAAATCAAACCGTTGGTGAGCTTTCTTTTTCAACATTATTGACTGCAGCAGATTGTTTCATATTGGGAGAGATTAGGAGAGGGAGATGATAGTCAAGGATAGCCACTGATAGCAGCTGTGCTGTCAATGATAACTTTCGATTTGATAAAAATTGGAGGAAGTTGGAGTGTGCGAAAATTAGTGATTCTGGTTTTTTATTTGGTGGGATGAGCAAAATTATTGGGGTTGTTTTTTAGTCTTTCCCAATATATGGGCCTATTTTTGTGCTATATCTACAAACTTTTTATGATTGTGTTGCATATGCT

Coding sequence (CDS)

GTTTCTGCTTTCTTGCTGTCGTCGTCGTCGCAGTCCCCGTCGCCCGTCGTCCCCCACCACCGCCCCCACTTGGCCCGTGCTATCGGTGTGAGGCGACATTGGGCAAAAGTGGCAACCGCGGTTGCAAAAAGAACGAAAAAGCCGGCTCTACAAACTGTTTTTGCTGGGCAAGCAACAACTGCTCTTCCCCTTTCACAGGCCCTTCTACTTTTGTTGGCCCTTCCACTTCCGTTGGCTCTTCTATTTCCGTTGGCCCTTCTACTTCCGTCAGCCCTTCATGTCAGCACCCAAACGCAGATGCTCATGCATCGACTTTGGGTGCAGAAGAGACAGAATCCCTGCAATGAGAGGTGTGCCTGTTACGGGAGCATCGGCCGAAATCCCCACCAGCATGATGACAATAAAGGAAAGAAAGGTAAAGAAAAATGTAGAAAGAAGGCAGAAAGAACCCGTCTATTGAAGTGGGAAAAAGAAGAAGAAGAAGAAGAAAAGTGCCGCTGCTGGGAAGAATAG

Protein sequence

VSAFLLSSSSQSPSPVVPHHRPHLARAIGVRRHWAKVATAVAKRTKKPALQTVFAGQATTALPLSQALLLLLALPLPLALLFPLALLLPSALHVSTQTQMLMHRLWVQKRQNPCNERCACYGSIGRNPHQHDDNKGKKGKEKCRKKAERTRLLKWEKEEEEEEKCRCWEE

Homology

The following BLAST results are available for this feature:

BLAST of CcUC06G122200.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G122200.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G122200.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G122200.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G122200	CcUC06G122200	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122200.1-exon	CcUC06G122200.1-exon-CicolChr06:24586380..24586831	exon
CcUC06G122200.1-exon	CcUC06G122200.1-exon-CicolChr06:24588614..24589041	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122200.1-cds	CcUC06G122200.1-cds-CicolChr06:24586380..24586831	CDS
CcUC06G122200.1-cds	CcUC06G122200.1-cds-CicolChr06:24588614..24588674	CDS

The following three_prime_UTR feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G122200.1-three_prime_utr	CcUC06G122200.1-three_prime_utr-CicolChr06:24588675..24589041	three_prime_UTR

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G122200.1	CcUC06G122200.1-protein	polypeptide