CcUC06G120970.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G120970.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Epidermal patterning factor-like protein
Location	CicolChr06: 23047686 .. 23049366 (+)
Sequence length	387
RNA-Seq Expression	CcUC06G120970.1
Synteny	CcUC06G120970.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGTAAAACACCACTTTACCTCATAATCATTATTAATCCAAACTTATAGGCATATTATGTATATGTATATATTTATATGAAATATCAATCCAATTTGTTTTGGAATATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTGTTGTTTCTAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATGTAAGTGTAAAGATAAGTACTTTCAACCTTGAATTAAACACGAACTTTCACTTTCCCCTGTATCATATAAGAAGATATTAATTATTATTATTCCTCAAACCTTATCTTTTCCTAACACAGTTTTTATTAGTCCTGTGGAATCTACAAGCTATTTAATGCGAATATAAGTTAGTTGTTTTCGTTGAATCAGATGGATTTGATCATTGGACCACTTTACTTTTAATTGTTTGTGGTAATCATTATACAATTTGAGGTAATCATAAAATAGATTTATTGGGAAACCGAAATAGTTTTATTTTCATAATTTTTTAAGTTGATGGGTTGGTTTGTATTAGTTAGGGGTGTGGTTTTGAGTAATTGAATGGTCGTAGTCATACTGCAGTACTTGGGCCGACCAATTTTAGAGGTGCAGCAAAGGAAATATTTTTAATTTAAAGCTCAGTTCTTTACAGCAAAAAATTGGGACGTGTGTTAAGATGAAAACAGCCATTGTTGTATATTTCAACTTAGACATGATGATGAGCAGCAGCGAGAAAACGTTAATGTTTCTGCTGGATCATGTTCAGATCTTATGTTTGTGTATACAGATATATTTATATAGATAGATAGATATATGTACCTTTTCCTCAACAGCTACGAGCCAAATTGAATACAAAACTTGAAACCTTCCCTTTCAGAGTTATTATGACATGTTCCAAAAGAAACTGAAGAAAAATATTTTAAATTTTAAATTTTAAACGAAACATTAATATCGACTTATTTGAAGTTCCAAATTTTTACTAGTACGTAAGGCTTGAAGAAGGGAGAAGGAAAGCCTCAGATTCTGACATGCCCCCATCATTCATGTACAATGATAATGATCGCTGAAATGTTTAAGAGTGGTACTCCAAAATTCTTAATCTAAAGGGCTATGGCGAGTTATTAACAAATCTAAGTTTAACGGCTCTCAGCAAGAAGATTCTAAATTTATTTTCAATGACATTTCTGTACAATCCAACGCAAATTTCCCACACCCCCTCATTTCTTTTCTTTTTCCTCTTTTGTAATGAAACCTTTAAATACAGGACTGATGAGAATTCCAAGGGGTTTATGAAGAAAATTAAACACACACACACACATACATACACACTTCCTGTGTTATATCATTTGCAGCTTAGCCCTTTTTGTTCTCTAAATCATAGACAGCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

mRNA sequence

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTGTTGTTTCTAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Coding sequence (CDS)

ATGGCTTTAAAAAACTCTCTCCTTCTCATTCTTCCTCTCATATTTTGCCTTTTTATCTCTCTCCCCACATCAGGGCATGAGGATTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCAAAGCAGAAGGAATTGGTAATTGGGTCAAGGCCACCACAGTGCTTCAACAAGTGCTTAAATTGCAAGCCATGTGTTGCTGCTTTGGTTATTTCTCAGCGCCATAAAGATGATGACAATAATATTGTTGTTTCTAATTTGGAGGCAGATCTTCTTCCAGTTCCTAAAGATGATGCTTATTATCTTCTCTCATGGAAATCATATACTGAAGTTCAGATCATAGACAAAGTGAAGCTTCATGATCGTCTGCTGCATCATTGA

Protein sequence

MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWKSYTEVQIIDKVKLHDRLLHH

Homology

[Close]

BLAST of CcUC06G120970.1 vs. NCBI nr
Match: XP_038879118.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida])

HSP 1 Score: 181.0 bits (458), Expect = 6.4e-42
Identity = 102/114 (89.47%), Postives = 103/114 (90.35%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHED------SSSSSSSSSSSSSSSKQKELVIGSRP 60
           MALKNSLLLILPLIFCLF S PTSGHED      SSSSSSSSSSSSSSSKQKELVIGSRP
Sbjct: 1   MALKNSLLLILPLIFCLFFSHPTSGHEDSSPSSSSSSSSSSSSSSSSSSKQKELVIGSRP 60

Query: 61  PQCFNKCLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           PQCFNKCLNCKPCVAALVISQ HK+DD  IVVSNLEADLLPVPKDDAYYLLSWK
Sbjct: 61  PQCFNKCLNCKPCVAALVISQNHKNDD--IVVSNLEADLLPVPKDDAYYLLSWK 112

[Close]

BLAST of CcUC06G120970.1 vs. NCBI nr
Match: XP_031736064.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-39
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSSSSSSSSKQKELVIGSRPPQCFNK
Sbjct: 1   MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60

Query: 61  CLNCKPCVAALVISQRH---KDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           CLNCKPCVAALVISQRH    +DD+++VVSNLEADLLPVPK +AYYLLSWK
Sbjct: 61  CLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 111

[Close]

BLAST of CcUC06G120970.1 vs. NCBI nr
Match: KAE8653105.1 (hypothetical protein Csa_020083, partial [Cucumis sativus])

HSP 1 Score: 173.7 bits (439), Expect = 1.0e-39
Identity = 93/111 (83.78%), Postives = 103/111 (92.79%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPL+FCLF+S PTSGH+ + SSSSSSSSSSSSSKQKELVIGSRPPQCFNK
Sbjct: 37  MALKHSLLLILPLLFCLFLSPPTSGHQQNFSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 96

Query: 61  CLNCKPCVAALVISQRH---KDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           CLNCKPCVAALVISQRH    +DD+++VVSNLEADLLPVPK +AYYLLSWK
Sbjct: 97  CLNCKPCVAALVISQRHTNNSNDDDHLVVSNLEADLLPVPKHNAYYLLSWK 147

[Close]

BLAST of CcUC06G120970.1 vs. NCBI nr
Match: XP_008443990.1 (PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo])

HSP 1 Score: 163.3 bits (412), Expect = 1.4e-36
Identity = 89/110 (80.91%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPL+F LF+S PTSGHE      + SSSSSSSSKQKELVIGSRPPQCFNK
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHE-----QNFSSSSSSSSKQKELVIGSRPPQCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWKSY 111
           CLNCKPCVAALVISQRH +++NN+VVSNLEADLLPVP+DDAYYLLSWK +
Sbjct: 61  CLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]

BLAST of CcUC06G120970.1 vs. NCBI nr
Match: XP_022987916.1 (EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima])

HSP 1 Score: 134.8 bits (338), Expect = 5.2e-28
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPLIF L +S PTSG+ED             SS+QKELVIGSRPP+CFNK
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED-------------SSRQKELVIGSRPPRCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           CLNC+PCVAALVISQRHK   NN   SNLEA  LP P+DDAYYLLSWK
Sbjct: 61  CLNCRPCVAALVISQRHKGVHNN-AFSNLEA-ALPAPRDDAYYLLSWK 93

[Close]

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL
Match: A0A1S3B8V6 (Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443 PE=3 SV=1)

HSP 1 Score: 163.3 bits (412), Expect = 6.6e-37
Identity = 89/110 (80.91%), Postives = 99/110 (90.00%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPL+F LF+S PTSGHE      + SSSSSSSSKQKELVIGSRPPQCFNK
Sbjct: 1   MALKHSLLLILPLLFSLFLSHPTSGHE-----QNFSSSSSSSSKQKELVIGSRPPQCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWKSY 111
           CLNCKPCVAALVISQRH +++NN+VVSNLEADLLPVP+DDAYYLLSWK +
Sbjct: 61  CLNCKPCVAALVISQRH-NNNNNLVVSNLEADLLPVPEDDAYYLLSWKYF 104

[Close]

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL
Match: A0A6J1JFP8 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111485317 PE=3 SV=1)

HSP 1 Score: 134.8 bits (338), Expect = 2.5e-28
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPLIF L +S PTSG+ED             SS+QKELVIGSRPP+CFNK
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED-------------SSRQKELVIGSRPPRCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           CLNC+PCVAALVISQRHK   NN   SNLEA  LP P+DDAYYLLSWK
Sbjct: 61  CLNCRPCVAALVISQRHKGVHNN-AFSNLEA-ALPAPRDDAYYLLSWK 93

[Close]

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL
Match: A0A6J1EZ19 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111440854 PE=3 SV=1)

HSP 1 Score: 134.4 bits (337), Expect = 3.3e-28
Identity = 77/110 (70.00%), Postives = 81/110 (73.64%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MAL NSL LILPLIF L +  PTSG+ED              SKQKEL IGSRPP+CFNK
Sbjct: 1   MALNNSLFLILPLIFSLSVFHPTSGNED--------------SKQKELAIGSRPPKCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNI--VVSNLEADLLPVPKDDAYYLLSWK 109
           CLNCKPCVAALVISQRHK DD+N   VVSNLEA    VPKDDAYYLLSWK
Sbjct: 61  CLNCKPCVAALVISQRHKGDDSNNGGVVSNLEA--AQVPKDDAYYLLSWK 94

[Close]

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL
Match: A0A6J1HB97 (Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111461746 PE=3 SV=1)

HSP 1 Score: 134.0 bits (336), Expect = 4.3e-28
Identity = 76/108 (70.37%), Postives = 83/108 (76.85%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MALK+SLLLILPLIF L +S PTSG+ED             SSKQKELVIGSRPP+CFNK
Sbjct: 1   MALKSSLLLILPLIFSLSLSHPTSGNED-------------SSKQKELVIGSRPPRCFNK 60

Query: 61  CLNCKPCVAALVISQRHKDDDNNIVVSNLEADLLPVPKDDAYYLLSWK 109
           CLNC+PCVAALVISQRHK   NN   S+LEA  LP P+DDAYYLLSWK
Sbjct: 61  CLNCRPCVAALVISQRHKGVHNN-AFSSLEA-ALPAPRDDAYYLLSWK 93

[Close]

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL
Match: A0A6J1I4N2 (Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC111470622 PE=3 SV=1)

HSP 1 Score: 130.6 bits (327), Expect = 4.8e-27
Identity = 76/110 (69.09%), Postives = 80/110 (72.73%), Query Frame = 0


Query: 1   MALKNSLLLILPLIFCLFISLPTSGHEDSSSSSSSSSSSSSSSKQKELVIGSRPPQCFNK 60
           MAL NSL LILPLIF L + LPTSG+ED              SKQKEL IGSRPP+CFNK
Sbjct: 67  MALNNSLFLILPLIFSLSVFLPTSGNED--------------SKQKELAIGSRPPKCFNK 126

Query: 61  CLNCKPCVAALVISQRHKDDDNNI--VVSNLEADLLPVPKDDAYYLLSWK 109
           CLNCKPCVAALVISQR K  DNN   VVSN+EA    VPKDDAYYLLSWK
Sbjct: 127 CLNCKPCVAALVISQRLKGYDNNNGGVVSNMEA--AQVPKDDAYYLLSWK 160

[Close]

BLAST of CcUC06G120970.1 vs. TAIR 10
Match: AT1G80133.1 (unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 proteins in 15 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 154; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 42.4 bits (98), Expect = 3.3e-04
Identity = 22/49 (44.90%), Postives = 28/49 (57.14%), Query Frame = 0


Query: 36 SSSSSSSSKQKELVIGSRPPQCFNKCLNCKPCVAALV-ISQRHKDDDNN 84
          S +     + KE V+GS PP C  KC NCKPC+  L  I   H DDD++
Sbjct: 32 SGAHGHQQRMKESVMGSEPPVCATKCRNCKPCLPYLFDIRGAHDDDDDS 80

The following BLAST results are available for this feature:

BLAST of CcUC06G120970.1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038879118.1	6.4e-42	89.47	EPIDERMAL PATTERNING FACTOR-like protein 8 [Benincasa hispida]	[more]
XP_031736064.1	1.0e-39	83.78	EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucumis sativus]	[more]
KAE8653105.1	1.0e-39	83.78	hypothetical protein Csa_020083, partial [Cucumis sativus]	[more]
XP_008443990.1	1.4e-36	80.91	PREDICTED: EPIDERMAL PATTERNING FACTOR-like protein 1 [Cucumis melo]	[more]
XP_022987916.1	5.2e-28	70.37	EPIDERMAL PATTERNING FACTOR-like protein 8 [Cucurbita maxima]	[more]

BLAST of CcUC06G120970.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G120970.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3B8V6	6.6e-37	80.91	Epidermal patterning factor-like protein OS=Cucumis melo OX=3656 GN=LOC103487443...	[more]
A0A6J1JFP8	2.5e-28	70.37	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11148...	[more]
A0A6J1EZ19	3.3e-28	70.00	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1HB97	4.3e-28	70.37	Epidermal patterning factor-like protein OS=Cucurbita moschata OX=3662 GN=LOC111...	[more]
A0A6J1I4N2	4.8e-27	69.09	Epidermal patterning factor-like protein OS=Cucurbita maxima OX=3661 GN=LOC11147...	[more]

BLAST of CcUC06G120970.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G80133.1	3.3e-04	44.90	unknown protein; LOCATED IN: endomembrane system; Has 154 Blast hits to 154 prot...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

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IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PFAM	PF17181	EPF	coord: 49..108 e-value: 7.0E-11 score: 41.9
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 24..48
None	No IPR available	PANTHER	PTHR33109:SF57	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN	coord: 3..109
IPR039455	EPIDERMAL PATTERNING FACTOR-like protein	PANTHER	PTHR33109	EPIDERMAL PATTERNING FACTOR-LIKE PROTEIN 4	coord: 3..109

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G120970	CcUC06G120970	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G120970.1-exon	CcUC06G120970.1-exon-CicolChr06:23047686..23047758	exon
CcUC06G120970.1-exon	CcUC06G120970.1-exon-CicolChr06:23047868..23048119	exon
CcUC06G120970.1-exon	CcUC06G120970.1-exon-CicolChr06:23049305..23049366	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G120970.1-cds	CcUC06G120970.1-cds-CicolChr06:23047686..23047758	CDS
CcUC06G120970.1-cds	CcUC06G120970.1-cds-CicolChr06:23047868..23048119	CDS
CcUC06G120970.1-cds	CcUC06G120970.1-cds-CicolChr06:23049305..23049366	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G120970.1	CcUC06G120970.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010374	stomatal complex development
biological_process	GO:0010052	guard cell differentiation
cellular_component	GO:0005576	extracellular region