CcUC06G120170.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G120170.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 21377864 .. 21378389 (-)
Sequence length	312
RNA-Seq Expression	CcUC06G120170.1
Synteny	CcUC06G120170.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGTCGATTTGGTTGTTTCTAATGCTCTAGTTGTTTGATTTGATTGTGATGGAACAATCCGATAACATTGAAACAATTCCATTTAAAAAGGTGGAATTCTAGATCCAAGTTCAGGGTCTTCCGTTCGGATACAGATACATGTCGAAAAGAACGGCAAGATGATCGGGGGAGCAATTGGCGACTTAGAGGAGATTAATGTGGATGGACGTAACACAACCTCTCCAAAACTAAGGAGGTATGGTGCTCTTTTCATTATGAAAAACTTCAAGATTTTTGTTACAGTTGTGGCATTTTGGGTCACTAGGCAGATGGAATCGATGTTGATAAAGACAGGGAACCAAGAGATGACGGGAACACGTGAAGAAATGGAGTCAGAAATTGAGCAGCAGGCAGACCCAAATGAACTAAAACCGTTGCAAAAAATGCCCCCTGGGTTCATTCGAAGGGTCAGAATGTTGAATGAAAATCTTAAAGAGGCAGAGGAGAATGGATGGCTCAGTGAAGGGGAAGAGGAAGTTAAATGA

mRNA sequence

ATGGGTGGAATTCTAGATCCAAGTTCAGGGTCTTCCGTTCGGATACAGATACATGTCGAAAAGAACGGCAAGATGATCGGGGGAGCAATTGGCGACTTAGAGGAGATTAATGTGGATGGACGGAACCAAGAGATGACGGGAACACGTGAAGAAATGGAGTCAGAAATTGAGCAGCAGGCAGACCCAAATGAACTAAAACCGTTGCAAAAAATGCCCCCTGGGTTCATTCGAAGGGTCAGAATGTTGAATGAAAATCTTAAAGAGGCAGAGGAGAATGGATGGCTCAGTGAAGGGGAAGAGGAAGTTAAATGA

Coding sequence (CDS)

ATGGGTGGAATTCTAGATCCAAGTTCAGGGTCTTCCGTTCGGATACAGATACATGTCGAAAAGAACGGCAAGATGATCGGGGGAGCAATTGGCGACTTAGAGGAGATTAATGTGGATGGACGGAACCAAGAGATGACGGGAACACGTGAAGAAATGGAGTCAGAAATTGAGCAGCAGGCAGACCCAAATGAACTAAAACCGTTGCAAAAAATGCCCCCTGGGTTCATTCGAAGGGTCAGAATGTTGAATGAAAATCTTAAAGAGGCAGAGGAGAATGGATGGCTCAGTGAAGGGGAAGAGGAAGTTAAATGA

Protein sequence

MGGILDPSSGSSVRIQIHVEKNGKMIGGAIGDLEEINVDGRNQEMTGTREEMESEIEQQADPNELKPLQKMPPGFIRRVRMLNENLKEAEENGWLSEGEEEVK

Homology

The following BLAST results are available for this feature:

BLAST of CcUC06G120170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G120170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G120170.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G120170.1 vs.


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 45..72

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G120170	CcUC06G120170	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G120170.1-exon	CcUC06G120170.1-exon-CicolChr06:21377864..21378054	exon
CcUC06G120170.1-exon	CcUC06G120170.1-exon-CicolChr06:21378181..21378297	exon
CcUC06G120170.1-exon	CcUC06G120170.1-exon-CicolChr06:21378386..21378389	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G120170.1-cds	CcUC06G120170.1-cds-CicolChr06:21377864..21378054	CDS
CcUC06G120170.1-cds	CcUC06G120170.1-cds-CicolChr06:21378181..21378297	CDS
CcUC06G120170.1-cds	CcUC06G120170.1-cds-CicolChr06:21378386..21378389	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G120170.1	CcUC06G120170.1-protein	polypeptide