CcUC06G119950.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G119950.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr06: 20466926 .. 20469032 (+)
Sequence length	354
RNA-Seq Expression	CcUC06G119950.1
Synteny	CcUC06G119950.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACCCTAATGAGCTTTTCTTGCTATCAGGTGCAGCACCAAGTAATCTCATGTTGGTAACTGCATTCATATCCTCTGGTGGTAGTTTTGCCAACTGCCAAGCATAAAACGTCGTCAAGATGTGAAGTATGACAAACAAACAACAGTATCTTCGTTAAGCAATCTTGTAAACTGATAAATAACTTAATTAATAGCCGGTTAGTTGGAAAAGTTGTCATCTCCTTCTTGGGAGTGGGGTGAACTACTAACCTTCATTAAATTTTGACCTTTCTCGCCCTCAAATTTCTCTGGATAAATGGCTGCAAGAATCATCAATAATCGCAACTTATTTTCACGACTTGCATCCTGCAAAGTTGTTCGATGTAGGTTTCATATTCATATCTCTAATGGCATGTACTTAAGAACGTTAGTATAGTTTCAGTAATCACCTCATTGGTCGTCAAAAATTTTATTACATCTTTTGTTCCTGCATCTCCAAAAACAAGATCCTGCTCAATTTGTCCTAATTCTCTAAGCCCCTGTTCCTTGATAAACTTGTTTAGTTTTACTGCAATCTGAATTAATAAACTCAAAGTCAGTTCCTAAAAAAATTCAGAAGTTATTCCCAACTCTTCTGGATATCAAACATATTGCTGAGCAAGAAGGAACGAAGATTCCTTATGCTCCTGGAACATTTTTCAGTTTTTAACTACATGTTTGGGAGTGACGGTTGAAGTAGAGATTTTAGAAGAAAATGTTTTGGTACAAATAATTTTGTACAATTTATTTTCATACATTCATATTGATGTTTTGGTTCCAAACTTTTAAAAGTGATTTTGAATTATTATGATTGGTTTCAAAAGTGATTTTTAGAATTACGAAATTTATGATGGAAATTTTTATTTATGAAAAATAGTCAGATAGATAAACCAGGCAAATTTTACTTCTAAAATTCAAAAAAAACAAAAACAAAAAAAATGTGCACTAATTTTGTGGGTGATTCCCGATCAATCACCGCACTAAAAGCACATTTCAACCAATTGTTGAAAAATCAATTCTAACTGATATTTTAGATTTTTCTAAAATCAACTTCAACCTTTGCCAAACATTAATTTTTTAAAGAAAAATGATTTTGACAATGGCAGAAGTGATTTTTGTCATGTAAAAATCACTCCCAAACTGACCCTAAGGTTGTTTGACTCAGCAAGGTTCTCAACCACAATACAAACCAAGCCTAACAAAATTTAAACACATCATCCTCTCTCCTCCATCTATAAGCTAGAATTGTTTGCTCTAGGGAGGGGAAAGTAACACACAACATTTAGGTCAAAAGTACCATACATAACATAATTGTTCGTTCTTCTACAAGAAACTAACCTCCACATGTAAGGAGAGCTTTTCAATTTGTTCACTATATTGTGGCAAGGCTTGAACCATCTTTTGCAGATCCCGTGTGGAGAGTTCACTACTATTTCTATAGTACAGCAGAAAGTATTTAGGTCAGAAAAGCGACATCATAGTAAAGTAGGTTTGTTTCAGTACCGCATATATAACAAACCACATGAAACTTAGCTCATATAGGTACCCAATGCAAGAATAATAAATAAATAAATAAATAAGAAACAAGAAAAAAAATAAATAAAAAAAATAAGAAAAGAGACAAATATGGCAGTATTCCCGTAACCAATGTGTGAGGCCCCAACACTGATCATGCATTCTCACAAGGAAAAGAAAGGGATACAGTGTGAAAGTTAGAGAATGTTTTTGCGTGAGTGTGATCAGTATATAGGGTACTGTTGGGTAGTATTACACTTTACATGCTTTTGTCTATAAGAAATTAAGTAGACGAAAAGGAGAGAACCAGCCCTCTCGGATGGCTAGGAGTTTCTATTGTCTAAGGGCTTCTTATTATTGAATATCACTTATAGTAAGGAAATACCTTACATATTGGTATCAGAGAAATCATCCTAGGGAGAATCGAAAAAACGACCAAAAAGCCATCAAAGAACGTTTCGAAATGACTGATCAAGAGCTTGAGTATCAAGAACGTGGAGAATTTACCTGCATAGAAGACGGGTCGGCATATTTGACAAAGGCGATTGACGCATTGGCCATGGAAATGGCATGA

mRNA sequence

ATGACCCTAATGAGCTTTTCTTGCTATCAGGTGCAGCACCAATTTTGCCAACTGCCAAGCATAAAACGTCGTCAAGATGTGAACCGGTTAGTTGGAAAAGTTGTCATCTCCTTCTTGGGAGTGGGGTTTCATATTCATATCTCTAATGGCATGTACTTAAGAACGGAGGGGAAAATCCCGTGTGGAGAGTTCACTACTATTTCTATAGTACAGCAGAAAGTATTTAGGTCAGAAAAGCGACATCATAGTAAAGTAGAGCTTGAGTATCAAGAACGTGGAGAATTTACCTGCATAGAAGACGGGTCGGCATATTTGACAAAGGCGATTGACGCATTGGCCATGGAAATGGCATGA

Coding sequence (CDS)

ATGACCCTAATGAGCTTTTCTTGCTATCAGGTGCAGCACCAATTTTGCCAACTGCCAAGCATAAAACGTCGTCAAGATGTGAACCGGTTAGTTGGAAAAGTTGTCATCTCCTTCTTGGGAGTGGGGTTTCATATTCATATCTCTAATGGCATGTACTTAAGAACGGAGGGGAAAATCCCGTGTGGAGAGTTCACTACTATTTCTATAGTACAGCAGAAAGTATTTAGGTCAGAAAAGCGACATCATAGTAAAGTAGAGCTTGAGTATCAAGAACGTGGAGAATTTACCTGCATAGAAGACGGGTCGGCATATTTGACAAAGGCGATTGACGCATTGGCCATGGAAATGGCATGA

Protein sequence

MTLMSFSCYQVQHQFCQLPSIKRRQDVNRLVGKVVISFLGVGFHIHISNGMYLRTEGKIPCGEFTTISIVQQKVFRSEKRHHSKVELEYQERGEFTCIEDGSAYLTKAIDALAMEMA

Homology

The following BLAST results are available for this feature:

BLAST of CcUC06G119950.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G119950.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G119950.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC06G119950.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G119950	CcUC06G119950	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20466926..20466967	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20467011..20467051	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20467120..20467161	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20467292..20467330	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20468202..20468211	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20468351..20468432	exon
CcUC06G119950.1-exon	CcUC06G119950.1-exon-CicolChr06:20468935..20469032	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20466926..20466967	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20467011..20467051	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20467120..20467161	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20467292..20467330	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20468202..20468211	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20468351..20468432	CDS
CcUC06G119950.1-cds	CcUC06G119950.1-cds-CicolChr06:20468935..20469032	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G119950.1	CcUC06G119950.1-protein	polypeptide