CcUC06G119490.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G119490.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	rubisco accumulation factor 1, chloroplastic
Location	CicolChr06: 16014543 .. 16027373 (-)
Sequence length	1875
RNA-Seq Expression	CcUC06G119490.1
Synteny	CcUC06G119490.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGGAAGACAGGGCTAGTCCTTCCTTAGTTGTACTTATTGACCCTAAGCCTGAGGTATGCTCTATTTTAATATAGTATTCCATGCAGAACTATTAATTTCGTTAATGCTTTCTCCAATCATGTAGCCTGAGGAGTTCAATGATGTCGTTCTACTTTTCGGACTAGTACCAGTTGGGAGAGACAGGGCTACGAAGAAGAGGAGAGCCCCATGGAAGCTCCATAGTCTAGTACATTCCCAACTTGGTGGGAGGAAGAAGTGTAAGATAAAGTTGTACAATCAAATGTCCAAGATCCCTGTTCATAATGAACAAAAATCCAAGACGTACATGGACACGACAGATAACATTCATCAGACTCGAAGGACTGTCCAATTGATTCATGGAAAGCCGTGGTTCGAGATTGTTGACACTAAACACGTTTATAAACGAGGATGTGAGTACTTTTCATTCGTTTACTTATGACTTGCGTATTTGATCTATGTTCATAGACAATAGACACAATATTCTTATTCCTCCATAAGAAGATATTGGACCATGCACATCCAACCCAAGTGAAGAAGAGCTTCATCACCGTTGATAGAGTCGTCGCAATGAGTCAAAATTTCTTATCCAACTCCTTAAATTTGTTTCTTATTTCTATGCACTAAATTCCTTACCTTATTTGTAGAACTTTTTCCGTCGTAGTCTCAGATTATACGAGGAGCTTAAGCAAGGGACTAGCCCCTTGGAGTTGAAGTACACTTGGTTGAAGGACTTGACCTTGCTTAACTATGTGGATGGGAAACAATCGGACTACAACATCTCTTGGTGCACGGTCGACTACATTTACATGTCGTACAACGTCACAGGATGCCACTAGGTGTTTCTGGTAATTGATATGGTTGTGGGGAAAATATTGGTTTGGGACTCATTGATTGCCTTCACATCAAATGTCAACTTATCGAAGAAGCTAAATAATATGCGGACGATACTTCCCGCGTTATTAGAGAAGGTGGGTATCCTACTATCGAAGCCGCAATTGCCAGTGACACCTTAGAGGGTTTATCAAGTGAACACGGCACCACAACAGACTAGTGAAGGTGATTGTGAGATTTTCTTTGCTTTGAATATAATGTAACATAGTCACCCTTAGATACTTTGACGCAAGAAAACATGGTATTCTTTAGGCATCAGTTAACAATACAGTTATGGGCCAAGAAAGCCTTTATGTAGAACTTTTCTTTTATATACACTAGTATTCGATCACGTGCATTACACGCGTATTTGCTAATTTTAAATAATTTGAGTGAAATATTGTTTAATATAAATATTTTTTAATGACTTAATATTGATTTTATATATTCATATAATAGGTTTGAATGCTAGTTTGTTCAGTGTTTTTATGATTTTTTATTGTGTAAAGTGTCTATAATGTTTGTATTTTTATTTTCAATTTAATCTCGATTTTTCTAAAGAAGGTTTCAGTTTATTTTTTTTTTATTTTCTAAATTTAGTCTCTCGTGTGGTGAATGTTAAAATTGACCATAAATTTAGGACAAATTGCAAAAACCACAACATGTATGGTGGTAGTTACAATTTGCGCATATTTATCTAGCATATTATTTAGGCATCAACAAAAATTTAGATGATAGAAGAGGCTAATCTAAGAGAAGTCAAAAAAATAAAATAAAGATAATAGAAGAAAACTCAAAATTTCCACCAATTTCTTATTTCTTTAAAAGTTAGGTTGTGAACTTAGAAATTTTCCCTCTTAATTTATTTTTTATCATAATCATCTTTTTTAATGTTGTAGTGCATAGTGTTTTCCTCCTTTTAAAATGTTTGGTGAAATGTTATTAAATATAATGTATAGTAGGTTTGAATGCTAATTTGTTTAGTGTTTTGATGATTTTATTGTGTGAATAATGTTTTTATTTTTATTTTCAATTTATTTATTTATTTTTATTTTTTTTAAATTTCGCCCCTCATGTGGTGCATGTTAAAACTGACCATAAATTTAGGACAAATTGCAAAAACCACAATATGTATGGTGGTAGTTGCAATTTGTGCATATTATGTAGCATATTATTTAGACATCAACAAACATTTAGAGGATAGAAGAGGCTAAGCTAAGAGAAGTCCAAAAAAAAATAAAGATAATATAAGAAAACTCAAAATTTTCACCAATTTCTTATTTCTTCAAAAGTTAGGTTGCGAACTTAGAAATTTTTTCTCAATTTATTTTGTATCATAATCATCTTTTTTAATGTTGTAGTGCATAGTTTTTTCCTTTTAAGATGTTTGCTTTGAATGCTAGTTTGTTTAGTGTTTTTCTGATTTTATTGTGTAAAGTATCTATAATGTTTGTATTTTTATTTTCAATTTAATCTCGATTTTTCTAAAAGAAGATTTTTCAATTTTTTTTATTATTTTTATTTTTTTAAGTTTAGTCCCTCATGTGGTGAAGGTTAAAATTGACCATAAATTTAAAACAAATTGCAAATACCATAACATGTATGGTGGTAGTTGTAATTTGTGCATATTTACGTAGCATATTATTTAGACATCAATGAAAATTTAGATGATAGAAGAGGCTAAGCTAAGAGAAGTCTAAAAAAAACAAAATAAAGATAATAGAAGAAAACTCAAAATTTCCACCAATTTCTTATTTCTTCGAAAGTTAGGGTGTGAACTTAGAAATTTTCCCTCTTAATTTATTTCTTATCATAATCATCTTTTTTTAATGTTGTAGTGCATAGTTTTTTCCTTTTAAAATGTTTGGTGAAATGTTATTAAATAAAATGAATTTTATCATTTGAAAAGAAAATTATAATATTTTTTTTAAAAAATATATATATATATTTTTACAATCAATTAAAACAAACTCTTATATGCCTTCTTAATTTAATGTTTTTTTAAAATTTCATTGTATTGTAGTTGTGTATACTACATTTTCATCATTCACTATTTGTGATTGTCATTTATATGTCTTCGACTTCTTTATTTATTGTCATTTTTGCCCTTTCTCTTATTTATTTTCTAACCTTGATTGCATTCCTTATTTTCATTGTCTTGCATATGTAATTTCTTTCATAGTTGAATTTATAGATTTTTTTATAGGAAAGTTTAGGGAGTTTTGATTATAATGTCTTGGATGTATATATTGATAGTAGAATTTGAATGGTTGTGTCTTTAATATAGTAATAATGATAATACTAATAGTTTGGGGGTAGGGTAACCATGCATTTAACACAATAATTTTTGTGTTACAAACAATTGGATTATTTTAATTCTATAATAAAAAAATTTAAGTGTGATATAATTAAATAAATTATGTGTTTGCTTTTTAATAAAACTTGTATTAGTTTAATGTTTCATACTTCATATTCATATAAAATTATTATTGATAATTAAATATTACAATATTCGTGTGACAATATATTACACTAAAACTCATGAAGAACATAAGTTTATAATAGATCACTAAGAAGTTTTCCTTTCTTCAACCAAACAAAAAACAGTACATTGATTATAAATGAGAAAGAAAAGACTCTTTGCTATGTTCACATTTATTCTGAAATAGGAATGTCTCACATAACATCTCAAAAGTCTAGAAATCGAGATATTACATACAACATCATGAATAATCTTTTGCAACTTGAATCTACCATCATCATGTTTGAGAAGCTTTGGAAATTAAAATTGTTTTGAAAACAATGCATTGAGAGAACAAAAATGAAGAAATGATAAAGGCTTAGGCATTAGTGAGAAATGGTAATCAATAAAAGTCATTTTTATAGTGGTTGAAGGTGAGAGTTACAAAACTTTTTAACTCCTAAAACTTACTAAAATAATGAAATAGAGTGTTAGTGCGTTGTTATTGATATTAATTTGGCAGCATCATCATCATCATGAATGAATTAAAATTTTAGTGGGGTGTGATGTTATCGATATTAATTTGGTATTAATTTAAAAATAATAAAGTAAAAAAGCAATTGCTACATTTTTTTTTGGTTATTTTCAAACATAACAAAATGAGCCAAATTATTTAAAAATAGACTTCTATCACTCAAGCAATAGAAGTCTATCATGGTCTATCGCTATAGACACGGAAATTTTTCTATATATATATATTTTGCTTAACGTGTTTCTACACCCACACAAAAATAAATGAGTGTTTTTCTTTTTTTCAATGCAATTTTAATAATACTAATAGTGACAATGTCCAATAATTACAATTGAAATGACATAAGTGTAATAAACTAAAAATAAAAATGATAATATAGTTTTAAAATATTTTTTAAAAATCCTAGCTTTTTAATATAGTATAGATATGTATATGTTCCATGCAAAAAGTGCACGTTATAGGAATAGGATACTATTCCTAACTCAGGCAAAGATCATTCATTATACAAATTTTTACATTTTGTTTTTCATCTCAGAGTAAAATTTCACCTGAGTAGGCCCATGTTTTTTTTTTTTTTTTTCATTCTAATTCTCATCTCGGGGTCAAAATATCGCCTGAGATGGCCCGAGTTGTTGTTCCTTTGACATTCTATTTTTTGTCTTTGGGTAAAATCTCGTCCGAGTAACCCTGAGTTTTTATTTATTTTACATTATATTTTTCATCTCAGGCAAAAACCTCGCTTGAGATGGCTCGAGTTATTCATTTTACATTTTGTTTTTCATCTCAGAGTAAAATTTCACCTGAGTAGGCCCATGTTTTTTTTTTTTTTTTTCATTCTAATTCTCATCTCGGGGTCAAAATATCGCCTGAGATGGCCCGAGTTGATGTTCCTTTCACATTTTGTTTTTCATCTTGGGTTAAAATATTGCTCGAGATGGCCCAAGTTGTTGTTCCTTTTACATTCAATTTTTTATCTCGAGGTAAAATTTCTCTCGAGTAACCTCGAGTTTTTGTTCCTTTTACATTCTGATTTTCACACTAGAGATGGCCCGAGTTGATGTTCCTTTTACATTCTGTTTTTAATCTCACCCGAGATGGCCCGAGTTGTTGTTCCTTTGACATTCTATTTTTTGTCTTTGGGTAAAATCTCGTCCGAGTAACCCTGAGTTTTTATTTATTTTACATTATATTTTTCATCTCAGGCAAAAACCTCGCTTGAGATGGCTCGAGTTATTCATTTTACATTTTGTTTTTCATCTCAGGGTATAATCCCGCCCAACTACGCCTGAGATTTTTTAACCTGAATGTAAATTCCATCACATATCATTAAATATTTAATACGTCAATTCGTCCACCATCGTTCATTACATATATATACTTGTCCACAAGTTGTCGTCGACATAATAATTACAATGTGTCTATCTAAGTGTTGTCCGTAAGTTGTTGTCGACATGTCTTCCGATTATATGTCCAACATTGCCACATCAATGACACTTATGAATTTGTTTTTGTATTTCGCCATTTGATGGTATTTGAACAATTGGTCTCTGGCCAACTATTCCAACAAATTTCAGTGGTAGGACAATTTTGTCAATAAAGCCTTCTGATATGAACAGAGGAGCCTAAATCATGCCATATGAACGTCATAAAAGATGCCAAGGATGCACAAAATATGCTATCAAGATTCACAATGAGAAGAACTTACATTTATGTGAAGTCAAGTGGAATTTATGAAGAATCAAGCTTCATTTAATGAACAAAGACTTTAAGCTACTTCAAATGAGATGTCATTTATTCTTTGATAGTTACAAATGCATGGAATATGAATGAAAAATACTAATCTCGGATTTATTGTATTTATTAAATGTATTTTTCAGTTTTGAGCCATTTTATATATGTTTATGTTACAATTAAATCATGGCTTATAATGATCATTAATTATGAGTGTTACAACTCTTTGGAATGCCTCATAGAATGTCTAGGGTTAGATTTTGAGGCCTATATAATCCCATGTAATTGTTCAAAAAAAGGAGAGATGGAAAAGATTTAGAAAATGTAGGGGAAAAAAAAAAGCCTTAGAGCTTTCTTTTAGCCTTGTCTATGTTACTTTTGCAATTCTATGGTGTTTAGGTTGCATGTCTAGAATCATTCAAGCTTGACTTGATCAATCGTGCTTGTGGAGTGATTCGAAGATCAAAAGGGTTGATGGGAGCATCAAGCTGTGTCCGATCCGTGGTTTTATTGATGGTCTCAGTAATCTGTCGTCTAGACATTCTTAGGGGCTGATATAATCTTGATTTGAGGTGTTTGAGTTTGAGATCTAAAGGTCTTGTTCATCAACAAGGTTGTTGGATCCAAATTCTCGAGGGTTACTTATCATTTGAAACATAAACCATGTTAGATCTGAAACATTACTATTTGACCTCATCTTTTTCTTTAAATGTCATAATTTGGTATCAATCCCATATGCTACATTTTGAAAAATTGCAAAGGTTGGTTATTATACATTAAATATGGAAGTTACATTTGGCACATTGAATTTCCCAACAATTTAGTTAAGAATACAACTCCAAAATTCTAAATTCCAGCCTATAGATTATTTCTTAAGAGTGTAAATGTTTGCACCAATACTTCGATGTTTCTTCCAAGCAATATTTTTAGATTCGAGGACGAATCTTCTTGAACAATGGGATAATGATATGAATAGAAGAACCTAAATCATGTCATATGAACGTCATGAAAGATGCCAAGGATGCACAAAATATGCTATCAAGATTCACAATGAGAAGAACTTACAATTATGTAAAGTCAAGTAGAATTTATGAAGAATCAAGCTTCATTTAATGAACAAAGACTTCAAGCTACTTCAAATGAGATGTCATTTACTCTTTGATGGTTACAAATGCATGGAATATGAATGAAAAATAATAATCTCGGATTTTTTGTCTTTATTAAATGTATTTTTCTAAGTTATTTTATGTATTTTTATGTTACAATTAGATCAAGGCTTATAATGATCATTAATTATGAGTGTTACAACTATTTGGAATGCTTCATAGAATGTCGGGTTAGATTTTGAGGCCTATATAATCTCATGTAATTGTTAAAAAAAAAAAAAAGGAGACTTGAAAGAGATTTGAAAATGTAGTAAAAGAGCCTTTGAGCTTTCTTTTAGCCTTGTGCTATGTTTCTTTTGTAATTCTATGGTGTTTAGGTTGCATGTGGAATCATTCAAGCTTGACTTGATCGATCTTGCTTGTGGAGTGATTTTAAGATCAAGGGTTGATGGGAGCATCAAGCTGTGTCCAATCCGTGGTTTTATTGATGGTCTCAGTAATCTGTCGTCTAGACATTCTTAGGGGCTGAATCATATTGATTTTGGGTGTTTAAGTTTGGGATGTAAAGCTATTATTCGTCAACAAGGTTGTTAGATCCAAGTTCTCAAGTGTTTCTTATCACCTTCACTTATCTTCTCACTAAGTGTTTAAGGAAGAAGAGTTGGAAGCATAGTTGGAAGCTAGTAGTAAGTTGGACACACACTTGGGAGGAGAACTACCATGTTGGATGCATGGTAGGTAAAGTTGGATGCATGGTGACCCTTTTTAGAGGAAAAATTGGTTAAGTGTTGAAGTGTTGGATGATTTGGAGAGTTGAGAAACAACCCTAAGGAAGGAGAAGTTGAGTTGGACGCATACTGGGGTAAGTTTGTTGAAAAATATAAAGGCTTAAGAGAGGAAAGTTGGATGCATAGGCTCGGGAGGCACAACATGGATGCATAAGTGAGCAATTAAGGAGTCCACGGGGACATGTTGGAGAGTCATGGACGCATGGACCAATGTAAAGAAGGAGTTGGGTGCATATCTAAGAGAATTTGGAGGAAACCGCACACATAAAGAACTTTATGAGTGGAAATTTGACTAAGTGTGGGAACCTCAGAGTAGTTGGCCACATACCTCCTAAAGGAGGAAATTTTTGGCTAAGTGTTGGACTCTTGGAAGAAGCTTGGACGCATAAGAGAGAGAGTGGATGCACAGGGGAGGTTTGGCAAGGGAAATTTGGCTAAGTATAGAAAGGTCGGAAGAAGAAAAGAGAGCAAAAGAAGCCAAACCCTAGGAAGCATCATCTTTGACGCATAGTATTGAAAGGTTGGATGCATGGTCCTATTTCCGAAGGGCTAAGTTGGACGCATGGTTGGAAATATTAGTGATAAGTGGTTTCATTTTGACTAACACTTTATAAGTACGAGGTGTCGGGATGCATGACAAATTAACATGCAAGGAAGCAAGTGTGTGGCTACATGTTGAGCTTAAATGCATGATGACATGGAGAAGCTAAGTGTCAACCTTGGAAGCAAAGAAGATGTGAGCAAGCATGTCTTCGAACTCTATAAATAGGACCAAGGGGGGGAGAGGAGCCCTCACACCATCACAAGTCCCCAATTTTCAGTAGAGAGAGAGAAGGAAGGTGGAGAAGCAAGCTTTGCGTCCAAAAGAGGACAAGTTGTGTCCAAGGAGCTGTTTTCCTTGTTGTTGAAGTGCTGTCTGTGTCCATCAATTGTCCCAGGTGTCCAAGGAAGGCTGCCCTACGTCCAATTGAGTTGTTTGAGGTGAAGTAGTGCTACCCTGCATCCAAGGAAGAAATTTTTGGCGTCCAGGAAGCTGTTTTAGAGTTTTTGGGGTTTTCAGGTTGCTGTTAGTTCTAGAAGCTCGAGAAAAGCTGAGAAGGACCGGAACTGAAAACAGGAAAAGAAACCCTAAGTCAGACAACTATCTCTACAGTGAGTGATTGATTTCCTTTTGCGAGAGAACTAAATTATACTCTCTAAATACTTATTAATAACATGCCTATGAGCTTATAATTAATAGCATGATTATGCGATCTTATGCATGTTATGGTGAGGTATCGGATAATTTATATTGAACATGATAGCATGCGGTAGTATGCATGCTAGGGCAAGTTAATGAATAAGTACATAGAATATCGAGCTTGTTGGATATTAGATCCTAACGTCAATGCTGAAGGATTATACCAAGGTATCAATTAACAGGTTATGTTTCCAATGCCGAAGGAACTTACGAAGGCATTGATGATGACAATCATGGCTGGGACCGGGATTCAACACCGCACAGGATGGTCAGAGGGTCGGAAGGACCTATTTTCTGAGCCTGTGGCAGGGATTTCCTCGTGGGATGGTCAGGTTCCTAAGCCTACGAGAAGTACCCAAGGGAATGGTCGGGGAGCCGACGGACCTAGCTCCTGAGCCTCGAAGGTAAAACTATACATAGGAGAAACATAGAAGACAGATAGATACAGAATTGAGAAGTTTAGCTGAGCCAGGTTGGCCAGTGGGAAAAACCAGTTAGGATTTGCTATGTTGAAGGTGCCAGCAGGAGGAGACGATTTTGAGAATAACCCTATGGGGAAGGTTTGAGTATAAGCTTGATTTAATTGTAGATTTACTTACACTTGATTTTATTTTACGAGTATTATGATTATCATTATAATTTTGAAATGGTTGATTGAATCCTAGTTTATTCGTTCACTCACTGGGCTTCATTGAAGCTCATCCTTTTCTTATGTTTTTCTTTCCAGTTAGCAGCCGAGTTTTCATTGCTATGCAAAGTCAAGGTCTGCCGAGAAATTATGTGTATTAGCTATAGACAGCAATCTAAAAGAGGAACTAGAATCATGTCTTTTGTAAACAGACTTGTAAAACAGTTGTAATAATAAGTTATGCATTTTATTAATGAGTTAGTTTTATTTCTGCTAGTGTAAATTGCACATGTTAAGATGAGAAAGATAGAGGTTCGAGGTAGGCATCGCAAGAGGGTCAATATCTGCTGTCGTCATGTTCTGTCTCAGGGTGAGGTGTGACACGTTTCCTCTTCCTACTAACACCACCATTAGTTATTGAATCCATTGAATGTTCATTGGTTGTTCGGTTACTATCAACCAACGGTCCCCTATCAGTTCGTGACTCAAACTCGATTGTCATCAGATTTTCTTCATTGTGTGAGTCAATATGAACTACATTAACATCGACCTCAGATAGATGCACATTATCCATACTTATATCGACATCAAAATCTATTGACATATCTACATAAAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACTCCCTACTCAACAACCCTTCCATTTTGTCTCCCAATTTCAGTAGGATTACATTATCATTTAGTGGACTTAATGATTGCACATCATGCAAACTTATGTGATTTTTAGGAATAAAATCAAGGTGGGAGGGAATGGAGGGTACATTTTGGAGCATTGGGATTGGGAATGATGGTACATTACTGCCGCTGTTATGCATTAACATCAATACTTTAGACAATAAAAGAGCAATCTAGGATACATCATCGCTAGTTAAGAAAAAAATGGAGGTGTTCTTGATTATTAATGACAGATGCAGAGACATCCGATCGAACATTATACAGACACCTCATAACTAACACAAACTCATCAGAATTTATCCCCACTTATTCTATATATTTGCCTTAAGAACTCTTCCTATGTTATTCTGTCCTCTACGATCAAACCTTTCAACTGACCCCATGTATTCTTTCTCTGTCTCCTTCCATTCGCCCCCGAAACAAACAAATATGCTAGGTCCTGAAAAAATCCAAATATATGGAAAAAAGTTACTAAGAAACCTCAAATTCTCGGAGAGAATAATAAATCTCGTAGAAAATTGTCAATTTCTTGACTGAGATTCAAAAAATCTCGGGCGAGATTATTAATTTCAAACCGAAATTCCGTACATAACATGTAAAATCATTTTTTTGGGATCAACAACATGCACTTTAGAATCCTAACGTATTTGATAAAGACAGGGTAGAGATATATACCTTGTATTTCTGATTTTCTGTGGAGAGATGTGTTGCACAAGAGAAATAAACCCCAAAATAGATAAGAGGAAAAAAAAAAAAAAATTAGAACCAAAACTTATAAAGCAAGTCAAATTTTGGGTTTCTAAAAAAATGATATAATAATAAGATAATGAAACATCTGAAGGCATATTGGTAAAATTAATGTATTAGTAATATATCCATACATGTGGCCGAATAGAAGCTTCCAATTTTATAACTCGATCTCGATCCCAATCTCGACCAAGTTCGCCCGAAAAAAAACTACATTTGAGAGTGCCAATGAGAGTGTCAAGAATTCGTGTTATTTTTTAAAAGGAAAAACTTGGGAGGGTTAGTTTGGACAATTTCTCCGTAAATATACACATCAGGAAATATAACCAAATTACTATTTTAGCCTCAGCCTGAAATTGTAAAAAAAATATCTTCCACTCCCGTATTTCCAAAATTATCAAATAGATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCGAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCTATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGCTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACTCCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCTGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAGGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATATGGCGAGGAATCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAAAAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGAAAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTGTTGTTGGTGGTTAGGCCACCAAAGGATATGGAAGATGATCAGTTG

mRNA sequence

GAGGAAGACAGGGCTAGTCCTTCCTTAGTTGTACTTATTGACCCTAAGCCTGAGCCTGAGGAGTTCAATGATGTCGTTCTACTTTTCGGACTAGTACCAGTTGGGAGAGACAGGGCTACGAAGAAGAGGAGAGCCCCATGGAAGCTCCATAGTCTAGTACATTCCCAACTTGGTGGGAGGAAGAAGTGTAAGATAAAGTTGTACAATCAAATGTCCAAGATCCCTGTTCATAATGAACAAAAATCCAAGACGTACATGGACACGACAGATAACATTCATCAGACTCGAAGGACTGTCCAATTGATTCATGGAAAGCCGTGGTTCGAGATTGTTGACACTAAACACGCAAAAACCTCGCTTGAGATGGCTCGAGCAAAAACCTCGCTTGAGATGGCTCGAGTTATTCATTTTACATTTTGGTATAATCCCGCCCAACTACGCCTGAGATTTTTTAACCTGAATATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCGAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCTATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGCTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACTCCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCTGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAGGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATATGGCGAGGAATCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAAAAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGAAAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTGTTGTTGGTGGTTAGGCCACCAAAGGATATGGAAGATGATCAGTTG

Coding sequence (CDS)

GAGGAAGACAGGGCTAGTCCTTCCTTAGTTGTACTTATTGACCCTAAGCCTGAGCCTGAGGAGTTCAATGATGTCGTTCTACTTTTCGGACTAGTACCAGTTGGGAGAGACAGGGCTACGAAGAAGAGGAGAGCCCCATGGAAGCTCCATAGTCTAGTACATTCCCAACTTGGTGGGAGGAAGAAGTGTAAGATAAAGTTGTACAATCAAATGTCCAAGATCCCTGTTCATAATGAACAAAAATCCAAGACGTACATGGACACGACAGATAACATTCATCAGACTCGAAGGACTGTCCAATTGATTCATGGAAAGCCGTGGTTCGAGATTGTTGACACTAAACACGCAAAAACCTCGCTTGAGATGGCTCGAGCAAAAACCTCGCTTGAGATGGCTCGAGTTATTCATTTTACATTTTGGTATAATCCCGCCCAACTACGCCTGAGATTTTTTAACCTGAATATAAGATACAGAGACGCTCTTCCTCTTCTCTTCTCATCATTTCCATTTCCCCCTCCATCTCCATCCACCATGCTTTCCTCCACCACCACCACCGCCAATTCTCTCACTTCTCTCTCAGCCGCCGCCCACACCACCGCCATTTTCCTTCATCCTCCTCGAGACTCCTCTCTCCGCCTCTTCCTCCGCCGCCGTCCAAACCCCATTTCCGCTATTATAAACCCTTCCCCTTCCCCTTTAGCCGCAAAGCAACAAGTGTACCAGCCATTCCGCCCCCCTCCCTCTCCTCTCCCCTCTCAATACCGCTCCCTTGACGCCGAAGGCAAGCTCAATGTCCTCTCCAACCGCCTTGGACTCTGGTTCGAATACGCCCCCCTCATTTCCTCCTTGATTCAAGAAGGCTTCACTCCTTCCACTCTAGAGGAAATCACCGGAATCAGCGGTGTCCAACAGAACATCTTCGTCGTTGGCGCTCAGGTTCGCGATTCCCTAGTCCAGTCCAATAACTCCGATCCAGATGTAATCGCCGCCTTCGATACCAGCGGCGCCGAGTTGCTCTATGAAATTCGCCTCCTAAGTACCGAGAAACGTGCTGCGGCTGCCAAATATATAGTGGAGAACAGGCTTGATAGCAAAGGCGCGCAGGATCTGGCTCGAGCGATGAAGGATTTTCCTCGAAGAAGAGGGGAAAAAGGTTGGGAGTCTTTTGATTACGATTCTCCTGGTGATTGTTTGGCGTTTATGTATTACAGGTTGAGTAGAGAGTACAATAATCAATCGGAGCGGAGAACGGCGGCGTTGGAGGAGGCTTTGAAGGTGGTAGTGACGGATATGGCGAGGAATCTGATTGTTGGGGATTTGGAGGGAAAAGGAGACGGGAAGGAAGGGGATGAAGAGGAAATCGGAGCGGCAGTTAGGGTTCCGGTGGTGCGGTTGAAGATCGGAGAAGTTGCGGAGGCGACAACGGTAGTGGTGATGCCGGTGTGCAAGGCAGGGAAGGGGGAAAAAGGAGTTGGAGAAGCGCCAATGGAGGTAAGAAGCGAGGGAGAATTCGGAGTTGTGGTGGCGGAAAAGGAGTGGAGCAGGTGGGTGGTGCTGCCGGCGTGGGAGCCGGTGGCGGGGTTGGTGAAGGGCGGCGGCGTAGTGGTGGCGTTTGAGGATGCGAGAGCTCTACCATGGCGGGTGAACAGGTGGTACAAGGAGGAGCCAATTCTAGTAGTGGTTGATCGGAGTAGGAAGGAGGTGGTGGCGGGAGATGGGTTTTACCTGAAAGAAGCCACCGTGGGCGGCGGCGATGGAGGTGGTGAGTTGAAGGTGGAGAGAGGAAATGCATTAATGGAAATGGAAGTGAAGGAGAGTTTGGGAACTGTGTTGTTGGTGGTTAGGCCACCAAAGGATATGGAAGATGATCAGTTG

Protein sequence

EEDRASPSLVVLIDPKPEPEEFNDVVLLFGLVPVGRDRATKKRRAPWKLHSLVHSQLGGRKKCKIKLYNQMSKIPVHNEQKSKTYMDTTDNIHQTRRTVQLIHGKPWFEIVDTKHAKTSLEMARAKTSLEMARVIHFTFWYNPAQLRLRFFNLNIRYRDALPLLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKDMEDDQL

Homology

[Close]

BLAST of CcUC06G119490.1 vs. NCBI nr
Match: TYK28779.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 780.8 bits (2015), Expect = 8.9e-222
Identity = 401/448 (89.51%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. NCBI nr
Match: XP_008462710.1 (PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo])

HSP 1 Score: 779.6 bits (2012), Expect = 2.0e-221
Identity = 400/448 (89.29%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. NCBI nr
Match: KAA0062559.1 (rubisco accumulation factor 1 [Cucumis melo var. makuwa])

HSP 1 Score: 778.1 bits (2008), Expect = 5.7e-221
Identity = 400/448 (89.29%), Postives = 417/448 (93.08%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKV VT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. NCBI nr
Match: XP_038880540.1 (rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida])

HSP 1 Score: 775.4 bits (2001), Expect = 3.7e-220
Identity = 400/445 (89.89%), Postives = 419/445 (94.16%), Query Frame = 0


Query: 181 STTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVY 240
           STTTTANSLTSLSAAAHTTA FLHPPRDSSLRLFLRRRPN ISA +N  PSPLAAKQQVY
Sbjct: 3   STTTTANSLTSLSAAAHTTATFLHPPRDSSLRLFLRRRPNSISATLN--PSPLAAKQQVY 62

Query: 241 QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGIS 300
           QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTP TLEEITGI+
Sbjct: 63  QPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPPTLEEITGIT 122

Query: 301 GVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVEN 360
           GVQQNIFVVGAQVR+SLVQSNN+DPDVIAAFDTSGAELLYEIRLLSTEKRAAAA+YIVEN
Sbjct: 123 GVQQNIFVVGAQVRESLVQSNNADPDVIAAFDTSGAELLYEIRLLSTEKRAAAARYIVEN 182

Query: 361 RLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAAL 420
           RLD KGAQDLARA+KDFPRRRG+KGWE FDY+ PGDCLA+MYYRLSREYNN SE RTAAL
Sbjct: 183 RLDIKGAQDLARALKDFPRRRGDKGWECFDYEEPGDCLAYMYYRLSREYNNPSEPRTAAL 242

Query: 421 EEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMP 480
           EEALKVVVT+ AR+LIVGDLEGKGDGKEG EEEI   +RVPVVR+KIGEVAEATTV+VMP
Sbjct: 243 EEALKVVVTEKARDLIVGDLEGKGDGKEGVEEEIEVGIRVPVVRMKIGEVAEATTVLVMP 302

Query: 481 VCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFED 540
           VCKAG+GEKGVGEAPME+RSEGEFGVVVAEKEW +WVVLP WEPV GLVKGGGVVVAFED
Sbjct: 303 VCKAGEGEKGVGEAPMELRSEGEFGVVVAEKEWRKWVVLPGWEPVVGLVKGGGVVVAFED 362

Query: 541 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNALME 600
           ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYL  ATV    GGGELKV+RGNALME
Sbjct: 363 ARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLTGATV----GGGELKVQRGNALME 422

Query: 601 MEVKESLGTVLLVVRPPKDMEDDQL 626
           M VKESLGTVLLVVRPPK+MEDDQL
Sbjct: 423 MGVKESLGTVLLVVRPPKEMEDDQL 441

[Close]

BLAST of CcUC06G119490.1 vs. NCBI nr
Match: XP_004142574.1 (rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hypothetical protein Csa_007640 [Cucumis sativus])

HSP 1 Score: 765.8 bits (1976), Expect = 3.0e-217
Identity = 393/448 (87.72%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSL+SLS+ AHTT+IFLH PRDS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ AR+LIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           LMEM VKESLGTVLLVVRPP++ EDDQL
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQL 444

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot
Match: Q9SR19 (Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.2 PE=1 SV=1)

HSP 1 Score: 436.8 bits (1122), Expect = 4.1e-121
Identity = 234/422 (55.45%), Postives = 305/422 (72.27%), Query Frame = 0


Query: 206 PRDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNV 265
           PR  S  +     P   SA + P   P  A+QQ+YQPFRPP SP+P+Q+RSLD+ GK+ +
Sbjct: 33  PRTVSFTVTASMIPKRSSANMIPKNPP--ARQQLYQPFRPPSSPIPTQFRSLDSAGKIEI 92

Query: 266 LSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDP 325
           L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGAQVRDS++QS + +P
Sbjct: 93  LAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGAQVRDSILQSIH-EP 152

Query: 326 DVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKG 385
           ++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLARA+KD+P RRG+ G
Sbjct: 153 ELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLARAIKDYPNRRGDVG 212

Query: 386 WESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDMARNL----IVGDLE 445
           W  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++ A+N     + GD E
Sbjct: 213 WLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKE 272

Query: 446 GKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKGEKGVGEAPMEVRSE 505
            + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +GEK + EAPME+ + 
Sbjct: 273 AEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAG 332

Query: 506 GEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVV 565
           G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW      KEEP+LVV 
Sbjct: 333 GDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD----GKEEPLLVVA 392

Query: 566 DRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKDME 624
           DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESLG V+LVVRPP++ +
Sbjct: 393 DRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESLGMVVLVVRPPREDD 440

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot
Match: Q9LKR8 (Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=RAF1.1 PE=1 SV=1)

HSP 1 Score: 430.6 bits (1106), Expect = 3.0e-119
Identity = 245/447 (54.81%), Postives = 314/447 (70.25%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
             LE+AL+  VT+ A+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           V+PVCKA +GE+ + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 538 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGN 597
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 598 ALMEMEVKESLGTVLLVVRPPKDMEDD 624
            L E  V ESLG V+LVVRPP+D +D+
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDE 425

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot
Match: Q7XDY9 (Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=39947 GN=RAF1 PE=2 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.4e-92
Identity = 200/409 (48.90%), Postives = 266/409 (65.04%), Query Frame = 0


Query: 229 SPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGF 288
           +P P A   Q+YQPF PPPSPLP +Y+ LD   +L VL +RLGLW EYAPLIS+L +EGF
Sbjct: 69  TPPPTAPPDQLYQPFHPPPSPLPDKYKDLDLGQRLAVLRDRLGLWHEYAPLISALSREGF 128

Query: 289 TPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDP-DVIAAFDT-SGAELLYEIRLLS 348
           TPS++EE TGISGV+QN  VV  QVRDSLV      P +++  FD+  G ELLYE+R L+
Sbjct: 129 TPSSIEEATGISGVEQNSVVVATQVRDSLVADEGGFPAELLRYFDSYGGPELLYELRFLN 188

Query: 349 TEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLS 408
             +RA AA++ ++ RL+ +G ++LAR+MKDFP+RRG+ GWE+F  D+PGDCLAF  +R S
Sbjct: 189 ARQRADAARHAIDRRLEPRGVRELARSMKDFPQRRGDDGWEAFTRDNPGDCLAFARFRQS 248

Query: 409 REYNNQSERRTAALEEALKVVVTDMARNLIVGDLE---GKGDGKEGDEEE-----IGAAV 468
           RE  + +E   A LE AL+VV T+ AR  +  +L+    K  G+E D+E+       AA 
Sbjct: 249 REAID-AEDSVAELERALEVVDTEPARARVEAELDRARRKAAGEEVDDEDGAANAAAAAS 308

Query: 469 R--VPVVRLKIGEVAEATTVVVMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRW 528
           R  VPVVRL  GEVAEATTV+++PV + G G + +  AP   R++ + G+V  +K W+RW
Sbjct: 309 RPAVPVVRLMYGEVAEATTVLLLPVVREGDGGEALAHAPRRTRTDADLGMVEVDKGWTRW 368

Query: 529 VVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYL 588
            V+P W PVA  V G  VV+   D R LPWR     + E +LVV +R R+EVV  DG Y+
Sbjct: 369 AVVPGWGPVAE-VAGEAVVIELADGRTLPWRS---AEAERVLVVANRGRREVVE-DGIYV 428

Query: 589 KEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKDMEDDQL 626
            E         G L VE+G  L    V E+   VL+VVRPP+D EDD +
Sbjct: 429 VERE-------GRLVVEKGRKLAAEGVGEAAAEVLVVVRPPRD-EDDMI 463

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot
Match: B4FR29 (Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV=1)

HSP 1 Score: 326.6 bits (836), Expect = 6.0e-88
Identity = 207/473 (43.76%), Postives = 284/473 (60.04%), Query Frame = 0


Query: 163 LLFSSFPFPPPSPSTMLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPI 222
           +L  S P P P+ ST       TA  +     A+H  A  +  P   S       R  P 
Sbjct: 1   MLSLSHPHPHPAASTTAPRHQRTA-PVWHRRRASHIAASAILLPGGGS----TGGRGGPG 60

Query: 223 SAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISS 282
              +  +P P+A   Q+YQPF PPPSPLP   R+LD   +L +L +R+GLW EYAPLISS
Sbjct: 61  DRRLPFTPPPMAPPGQLYQPFHPPPSPLPPSLRNLDLSERLQILRDRMGLWHEYAPLISS 120

Query: 283 LIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNS--DPDVIAAFDT-SGAELL 342
           L ++GF PS+++E TGISGV+QN  VV +QVRDSL+    +   PD++  FD+  G E+L
Sbjct: 121 LSRDGFNPSSIQEATGISGVEQNCLVVASQVRDSLLDDRAAAFPPDLLPYFDSLGGPEVL 180

Query: 343 YEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLA 402
           YE+R L+  +RA AA++ +  RL+ KG ++LARAMK FPR RGE+GWE+F  DSP DCLA
Sbjct: 181 YELRFLNARQRADAARHAIGYRLEPKGVRELARAMKGFPRWRGEEGWEAFSKDSPADCLA 240

Query: 403 FMYYRLSREYNNQSERRTAALEEALKVVVTDMARNLIVGDLE---GKGDG-----KEGDE 462
           F  +R SRE  +  + R A LE AL+VV T+  R  +  +LE    K  G     +EG+E
Sbjct: 241 FARFRQSREAIDVQD-RVAELERALQVVETESGRARVELELERARRKAAGEEEVDEEGEE 300

Query: 463 EEIGAAVR--VPVVRLKIGEVAEATTVVVMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVA 522
           ++  A++R  V VVRL+ GEVAEATTV+++PV +   G   +  AP   +++   GVV  
Sbjct: 301 DDAAASLRPGVTVVRLRYGEVAEATTVILLPVVRETDGVAAMESAPRRAKTDVGLGVVEV 360

Query: 523 EKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVVDRSRKEVV 582
           ++ W+RW V+P W PVA       VVV   D R LPWR++    EEP+LV+ +RS+KEVV
Sbjct: 361 DRAWARWAVVPGWGPVAE-AADDAVVVELADGRRLPWRMS---DEEPVLVIANRSKKEVV 420

Query: 583 AGDGFYLKEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKDMED 623
             +G Y+ E         G L VERG  L E  +  +   V++VVRPPKD +D
Sbjct: 421 E-EGVYVLERE-------GRLVVERGKKLAEQGIAAAAAEVVIVVRPPKDEDD 455

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot
Match: Q8YLP6 (RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX 2576) OX=103690 GN=raf1 PE=1 SV=1)

HSP 1 Score: 113.6 bits (283), Expect = 8.0e-24
Identity = 109/384 (28.39%), Postives = 186/384 (48.44%), Query Frame = 0


Query: 245 PPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQ 304
           PP +P P    +  A+  L  L  + G W E+   I+SL + G+ P  + E TG   VQQ
Sbjct: 5   PPNAPNPENATNELAQELLRKLRQKQGNWVEWGQAIASLQKSGYNPQDIFEATGFEPVQQ 64

Query: 305 NIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDS 364
           N  +VG+QV +SL +S  S    +A + T G+++LYE+RLL+ E+RAAA      +++D+
Sbjct: 65  NQVIVGSQVYNSLEKSGAS-AATLAHYATRGSDVLYELRLLTHEERAAAGDLTFTHKVDA 124

Query: 365 KGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEAL 424
             A+++A+A+KDF R R     E F  + PGD +A+  ++L+R+Y++  E R+  +   L
Sbjct: 125 DEAREIAKAIKDFSRFRILP--EGFS-NHPGDAVAYQAWKLARQYSDLQE-RSRLIARGL 184

Query: 425 KVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKA 484
           +   ++ AR  I   L          +  + +    P+      +  +    +V  V + 
Sbjct: 185 RFAHSETARKQIEQLLV---------DFTVVSQRPAPIPPFFRFDTEDELPRIVPVVGQL 244

Query: 485 GKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARAL 544
               + +   P+ V     F +V    E   WV LP W+          V++A ED   +
Sbjct: 245 PLKAEELKAVPL-VEEIEPFRLVKFSGE-QAWVALPGWQ----------VLLAAEDPVTI 304

Query: 545 PWRVNRWYKEE-----PILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNALM 604
               +R+ K+      P+LVVVDRS++E      F +        D  GEL  +      
Sbjct: 305 LATSDRFPKQNQTEPGPVLVVVDRSQREWNDFSYFVV--------DHDGELDFQWFETKP 351

Query: 605 EMEVKESLGTVLLVVRPPKDMEDD 624
           E  +   LG V+++VRP + ++++
Sbjct: 365 EFPI---LGKVIILVRPRRILDEN 351

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL
Match: A0A5D3DZE4 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001420 PE=4 SV=1)

HSP 1 Score: 780.8 bits (2015), Expect = 4.3e-222
Identity = 401/448 (89.51%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL
Match: A0A1S3CHL8 (rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103501013 PE=4 SV=1)

HSP 1 Score: 779.6 bits (2012), Expect = 9.6e-222
Identity = 400/448 (89.29%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWF+YAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFQYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVVVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL
Match: A0A5A7VA63 (Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold79G00440 PE=4 SV=1)

HSP 1 Score: 778.1 bits (2008), Expect = 2.8e-221
Identity = 400/448 (89.29%), Postives = 417/448 (93.08%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSLTSLS+ AHTTAIFLH P DS LRLFLRRR NPISAIINPSPSPLAAKQ
Sbjct: 1   MLSSTITNANSLTSLSSIAHTTAIFLHQPIDSPLRLFLRRRSNPISAIINPSPSPLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLNVLSNRLGLWFEYAPLISSL+QEGFTP TLEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNVLSNRLGLWFEYAPLISSLLQEGFTPPTLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN FVVGAQVR+SLVQSN+SDPDVIA+FDTSGAELLYEIRLLSTEKR AAAKYI
Sbjct: 121 GISGVQQNTFVVGAQVRESLVQSNDSDPDVIASFDTSGAELLYEIRLLSTEKRVAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARA+KDFPRR+G++GWE FDYDS GDCLA+MYYRLSREYNN SERRT
Sbjct: 181 VENRLDSKGAQDLARAIKDFPRRKGDRGWECFDYDSAGDCLAYMYYRLSREYNNSSERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKV VT+ ARNLIVGDLE KGDGK+G EEE GA VRVPVVRLKIGEVAEAT VV
Sbjct: 241 AALEEALKVGVTEKARNLIVGDLERKGDGKDGVEEETGAGVRVPVVRLKIGEVAEATKVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEG+FGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGDFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           F+DAR LPWRVNRWYKEEPILVV DRSRKEVVAGDGFYL   TVGGGDGGGELKVERGNA
Sbjct: 361 FKDARVLPWRVNRWYKEEPILVVADRSRKEVVAGDGFYLMGGTVGGGDGGGELKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           L EM VKESLGTV+LVVRPPK+MEDDQL
Sbjct: 421 LTEMGVKESLGTVVLVVRPPKEMEDDQL 448

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL
Match: A0A0A0LY43 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1)

HSP 1 Score: 765.8 bits (1976), Expect = 1.4e-217
Identity = 393/448 (87.72%), Postives = 418/448 (93.30%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLSST T ANSL+SLS+ AHTT+IFLH PRDS LRLFLRRR NPISAIINPS S LAAKQ
Sbjct: 1   MLSSTITNANSLSSLSSIAHTTSIFLHQPRDSPLRLFLRRRLNPISAIINPSSSSLAAKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           QVYQPFRPPPSPLP QYRSLD EGKLN+LSNRLGLWFEYAPLISSL+QEGFTP  LEEIT
Sbjct: 61  QVYQPFRPPPSPLPPQYRSLDTEGKLNILSNRLGLWFEYAPLISSLLQEGFTPPVLEEIT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGVQQN F+VGAQVR+SL+QSN+SDPDVIA+FDT GAELLYEIRLLSTEKRAAAAKYI
Sbjct: 121 GISGVQQNSFIVGAQVRESLLQSNDSDPDVIASFDTGGAELLYEIRLLSTEKRAAAAKYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           VENRLDSKGAQDLARAMKDFPRRRG+KGWE FDYD  GDCLA+MYYRLSREYN+ +ERRT
Sbjct: 181 VENRLDSKGAQDLARAMKDFPRRRGDKGWEYFDYDFAGDCLAYMYYRLSREYNSSTERRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
           AALEEALKVVVT+ AR+LIVGDLEGKGDGK+G EEEIGAAV+VPVVR+KIGEVAEATTVV
Sbjct: 241 AALEEALKVVVTEKARDLIVGDLEGKGDGKDGVEEEIGAAVKVPVVRMKIGEVAEATTVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           VMPVCKAG+GEKGVGEAPMEVRSEGEFGVVVAEK WSRWVVLP WEPVAGLVKGGGVVVA
Sbjct: 301 VMPVCKAGEGEKGVGEAPMEVRSEGEFGVVVAEKGWSRWVVLPGWEPVAGLVKGGGVVVA 360

Query: 538 FEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNA 597
           FEDAR LPWRVNRWYKEEPILVV DRSR+EVVAGDGFYL    +GGGDGGG+LKVERGNA
Sbjct: 361 FEDARVLPWRVNRWYKEEPILVVADRSRREVVAGDGFYL----MGGGDGGGDLKVERGNA 420

Query: 598 LMEMEVKESLGTVLLVVRPPKDMEDDQL 626
           LMEM VKESLGTVLLVVRPP++ EDDQL
Sbjct: 421 LMEMGVKESLGTVLLVVRPPRETEDDQL 444

[Close]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL
Match: A0A6J1F451 (rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111439956 PE=4 SV=1)

HSP 1 Score: 657.5 bits (1695), Expect = 5.5e-185
Identity = 356/449 (79.29%), Postives = 388/449 (86.41%), Query Frame = 0


Query: 181 STTTTANSLTSLSAAAHTTAIF-LHPPRDSSLRLFLRRRPNPISAIIN--PSPSPLAAKQ 240
           S T  A SL+  +AAAHTT  F LH P    LRLFLRR PNPISA +N  PSPSPL AK 
Sbjct: 3   SATAPATSLS--AAAAHTTTTFLLHTP---PLRLFLRRPPNPISASLNPSPSPSPLVAKP 62

Query: 241 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 300
           QVYQPFRPPPSPLPSQYRSLDA GKL+VL+NRLGLWFEYAPLISSLIQEGFTP T+EEIT
Sbjct: 63  QVYQPFRPPPSPLPSQYRSLDAAGKLDVLANRLGLWFEYAPLISSLIQEGFTPPTIEEIT 122

Query: 301 GISGVQQNIFVVGAQVRDSLVQS-NNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKY 360
           GI GVQQN  VVGAQVR+SLVQ+ N++DPD+IAAFDT GAELLYEIRLL+ EKRAAAA+Y
Sbjct: 123 GIGGVQQNTLVVGAQVRESLVQTINDADPDLIAAFDTGGAELLYEIRLLNAEKRAAAARY 182

Query: 361 IVENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERR 420
           IVENRLD KGAQDLARAMKDFPRRRG+KGWESF+YD PGDCLAFM+YRLSREY+N SE R
Sbjct: 183 IVENRLDGKGAQDLARAMKDFPRRRGDKGWESFNYDYPGDCLAFMHYRLSREYSNMSEAR 242

Query: 421 TAALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTV 480
           TAALE+ALKV VT+ AR+LIV DLE +G+GK+  EEEI A VRVPVVRLKIGEVAEATTV
Sbjct: 243 TAALEDALKVAVTEEARSLIVRDLEREGEGKDEVEEEIEAGVRVPVVRLKIGEVAEATTV 302

Query: 481 VVMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVV 540
           VV+PVC   +G KGVGEAPMEVRSEGEFGVVVAE+ W RWVVLP WEP+AGL K GGVVV
Sbjct: 303 VVLPVCNGEEGGKGVGEAPMEVRSEGEFGVVVAEEGWRRWVVLPGWEPIAGLGK-GGVVV 362

Query: 541 AFEDARALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGN 600
           AF+DARALPWRVNRWYKEE ILVV DRSRKEV AGDGFYL  AT  G D  GELKV+RG+
Sbjct: 363 AFKDARALPWRVNRWYKEEAILVVADRSRKEVEAGDGFYLTGAT--GSD--GELKVQRGS 422

Query: 601 ALMEMEVKESLGTVLLVVRPPKDMEDDQL 626
            LMEM +KESLGTVLLVVRPPKDM+DDQL
Sbjct: 423 ELMEMGLKESLGTVLLVVRPPKDMDDDQL 441

[Close]

BLAST of CcUC06G119490.1 vs. TAIR 10
Match: AT3G04550.1 (unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G28500.1); Has 110 Blast hits to 110 proteins in 51 species: Archae - 0; Bacteria - 67; Metazoa - 1; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 436.8 bits (1122), Expect = 2.9e-122
Identity = 234/422 (55.45%), Postives = 305/422 (72.27%), Query Frame = 0


Query: 206 PRDSSLRLFLRRRPNPISAIINPSPSPLAAKQQVYQPFRPPPSPLPSQYRSLDAEGKLNV 265
           PR  S  +     P   SA + P   P  A+QQ+YQPFRPP SP+P+Q+RSLD+ GK+ +
Sbjct: 33  PRTVSFTVTASMIPKRSSANMIPKNPP--ARQQLYQPFRPPSSPIPTQFRSLDSAGKIEI 92

Query: 266 LSNRLGLWFEYAPLISSLIQEGFTPSTLEEITGISGVQQNIFVVGAQVRDSLVQSNNSDP 325
           L+ R+ LWFEYAPLISSL  +GFTP T+EE+TGIS ++QN  +VGAQVRDS++QS + +P
Sbjct: 93  LAGRMALWFEYAPLISSLYTDGFTPPTIEELTGISSIEQNRLIVGAQVRDSILQSIH-EP 152

Query: 326 DVIAAFDTSGAELLYEIRLLSTEKRAAAAKYIVENRLDSKGAQDLARAMKDFPRRRGEKG 385
           ++I+AFDT GAELLYEIRLLST +R AAA +I++  +DSKGAQDLARA+KD+P RRG+ G
Sbjct: 153 ELISAFDTGGAELLYEIRLLSTTQRVAAATFIIDRNIDSKGAQDLARAIKDYPNRRGDVG 212

Query: 386 WESFDYDSPGDCLAFMYYRLSREYNNQSERRTAALEEALKVVVTDMARNL----IVGDLE 445
           W  FDY+ PGDCL+F+YYR SRE  N S++RT+ L +AL V  ++ A+N     + GD E
Sbjct: 213 WLDFDYNLPGDCLSFLYYRQSRENKNPSDQRTSMLLQALGVAESEKAKNRLNTELYGDKE 272

Query: 446 GKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVVVMPVCKAGKGEKGVGEAPMEVRSE 505
            + + ++  +EE   A+R+PVVRLK GEVAEAT+VVV+PVCKA +GEK + EAPME+ + 
Sbjct: 273 AEKEKEKKKKEEEVKAIRIPVVRLKFGEVAEATSVVVLPVCKAEEGEKKILEAPMEIIAG 332

Query: 506 GEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVAFEDARALPWRVNRWYKEEPILVVV 565
           G+F VV AEK W RWVVLP+W PVA + KGG  V   +D + LPW      KEEP+LVV 
Sbjct: 333 GDFKVVEAEKGWKRWVVLPSWNPVAAIGKGGVAVSFRDDRKVLPWD----GKEEPLLVVA 392

Query: 566 DRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGNALMEMEVKESLGTVLLVVRPPKDME 624
           DR R  V A DG+YL  A  G       LK+E+G+ L   EVKESLG V+LVVRPP++ +
Sbjct: 393 DRVRNVVEADDGYYLVVAENG-------LKLEKGSDLKAREVKESLGMVVLVVRPPREDD 440

[Close]

BLAST of CcUC06G119490.1 vs. TAIR 10
Match: AT5G28500.1 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast stroma, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1); Has 109 Blast hits to 109 proteins in 49 species: Archae - 0; Bacteria - 67; Metazoa - 0; Fungi - 0; Plants - 41; Viruses - 0; Other Eukaryotes - 1 (source: NCBI BLink). )

HSP 1 Score: 430.6 bits (1106), Expect = 2.1e-120
Identity = 245/447 (54.81%), Postives = 314/447 (70.25%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEEEIGAAVRVPVVRLKIGEVAEATTVV 477
             LE+AL+  VT+ A+  ++ +L G+ + +   EEEI   +RVPVVRL+ GEVA A++VV
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERVKEEEI-KIIRVPVVRLRFGEVAGASSVV 300

Query: 478 VMPVCKAGKGEKGVGEAPMEVRSEGEFGVVVAEKEWSRWVVLPAWEPVAGLVKGGGVVVA 537
           V+PVCKA +GE+ + EAPME  S GEFGVV AEK+WSRWVVLP W+PV  + K  GV V+
Sbjct: 301 VLPVCKAEEGEEKLLEAPMEFESGGEFGVVEAEKDWSRWVVLPGWDPVVAVRK--GVAVS 360

Query: 538 FEDAR-ALPWRVNRWYKEEPILVVVDRSRKEVVAGDGFYLKEATVGGGDGGGELKVERGN 597
           F D R  LPW      K E I+VV+DR +K V A +G+Y      GG      +K++RG 
Sbjct: 361 FSDDREVLPWN----GKGEAIMVVIDREKKTVEADNGYYYLVVADGG------MKLDRGL 420

Query: 598 ALMEMEVKESLGTVLLVVRPPKDMEDD 624
            L E  V ESLG V+LVVRPP+D +D+
Sbjct: 421 VLKEKGVNESLGMVVLVVRPPRDDDDE 425

[Close]

BLAST of CcUC06G119490.1 vs. TAIR 10
Match: AT5G28500.2 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G04550.1). )

HSP 1 Score: 277.3 bits (708), Expect = 3.0e-74
Identity = 152/275 (55.27%), Postives = 198/275 (72.00%), Query Frame = 0


Query: 178 MLSSTTTTANSLTSLSAAAHTTAIFLHPPRDSSLRLFLRRRPNPISAIINPSPSPLAAKQ 237
           MLS T TT +S  S+   + T   F   P      ++ +      SA+I  S      KQ
Sbjct: 1   MLSLTATTLSS--SIFTQSKTHGFFNTRP------VYRKPFTTITSALIPASNRQAPPKQ 60

Query: 238 QVYQPFRPPPSPLPSQYRSLDAEGKLNVLSNRLGLWFEYAPLISSLIQEGFTPSTLEEIT 297
           Q+YQPFRPPPSP+P ++RSLD  GK+ VL++RLGLWFEYAPLISSL  EGFTP ++EE+T
Sbjct: 61  QLYQPFRPPPSPIPPKFRSLDTAGKIEVLADRLGLWFEYAPLISSLYTEGFTPPSIEELT 120

Query: 298 GISGVQQNIFVVGAQVRDSLVQSNNSDPDVIAAFDTSGAELLYEIRLLSTEKRAAAAKYI 357
           GISGV+QN  +VGAQVRDSLVQS  + P++IAAFDT+GAELLYEIRLL+T +R AAA+YI
Sbjct: 121 GISGVEQNSLIVGAQVRDSLVQS-GAKPELIAAFDTNGAELLYEIRLLNTTQRVAAAEYI 180

Query: 358 VENRLDSKGAQDLARAMKDFPRRRGEKGWESFDYDSPGDCLAFMYYRLSREYNNQSERRT 417
           V++  D+KGA DLARA+KDFP RRG+ G   FDY+ PGDCL+FM YR SRE+ + SE RT
Sbjct: 181 VDHGFDTKGAGDLARAIKDFPHRRGDVGLGDFDYNLPGDCLSFMLYRKSREHRSPSEIRT 240

Query: 418 AALEEALKVVVTDMARNLIVGDLEGKGDGKEGDEE 453
             LE+AL+  VT+ A+  ++ +L G+ + + G E+
Sbjct: 241 TLLEQALETAVTEKAKKAVLRELHGESEEERGKED 266

The following BLAST results are available for this feature:

BLAST of CcUC06G119490.1 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK28779.1	8.9e-222	89.51	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_008462710.1	2.0e-221	89.29	PREDICTED: rubisco accumulation factor 1, chloroplastic [Cucumis melo]	[more]
KAA0062559.1	5.7e-221	89.29	rubisco accumulation factor 1 [Cucumis melo var. makuwa]	[more]
XP_038880540.1	3.7e-220	89.89	rubisco accumulation factor 1.1, chloroplastic-like [Benincasa hispida]	[more]
XP_004142574.1	3.0e-217	87.72	rubisco accumulation factor 1.1, chloroplastic [Cucumis sativus] >KGN66790.1 hyp...	[more]

BLAST of CcUC06G119490.1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9SR19	4.1e-121	55.45	Rubisco accumulation factor 1.2, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q9LKR8	3.0e-119	54.81	Rubisco accumulation factor 1.1, chloroplastic OS=Arabidopsis thaliana OX=3702 G...	[more]
Q7XDY9	2.4e-92	48.90	Rubisco accumulation factor 1, chloroplastic OS=Oryza sativa subsp. japonica OX=...	[more]
B4FR29	6.0e-88	43.76	Rubisco accumulation factor 1, chloroplastic OS=Zea mays OX=4577 GN=RAF1 PE=1 SV...	[more]
Q8YLP6	8.0e-24	28.39	RuBisCO accumulation factor 1 OS=Nostoc sp. (strain PCC 7120 / SAG 25.82 / UTEX ...	[more]

BLAST of CcUC06G119490.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DZE4	4.3e-222	89.51	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_sc...	[more]
A0A1S3CHL8	9.6e-222	89.29	rubisco accumulation factor 1, chloroplastic OS=Cucumis melo OX=3656 GN=LOC10350...	[more]
A0A5A7VA63	2.8e-221	89.29	Rubisco accumulation factor 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc...	[more]
A0A0A0LY43	1.4e-217	87.72	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G690280 PE=4 SV=1	[more]
A0A6J1F451	5.5e-185	79.29	rubisco accumulation factor 1.1, chloroplastic-like OS=Cucurbita moschata OX=366...	[more]

BLAST of CcUC06G119490.1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G04550.1	2.9e-122	55.45	unknown protein; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplas...	[more]
AT5G28500.1	2.1e-120	54.81	unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic...	[more]
AT5G28500.2	3.0e-74	55.27	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Watermelon (PI 537277) v1
Date Performed: 2022-01-31

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR040781	Rubisco accumulation factor 1, helix turn helix domain	PFAM	PF18579	Raf1_HTH	coord: 258..318 e-value: 2.9E-22 score: 78.1
IPR041358	Rubisco accumulation factor 1, alpha helical domain	PFAM	PF18578	Raf1_N	coord: 331..438 e-value: 2.3E-35 score: 121.3
IPR040858	Rubisco accumulation factor 1, C-terminal	PFAM	PF18087	RuBisCo_chap_C	coord: 460..618 e-value: 1.3E-32 score: 112.3
IPR037494	Rubisco accumulation factor 1	PANTHER	PTHR35299	FAMILY NOT NAMED	coord: 178..625
None	No IPR available	PANTHER	PTHR35299:SF3	RUBISCO ACCUMULATION FACTOR 1.2, CHLOROPLASTIC	coord: 178..625

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G119490	CcUC06G119490	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16014543..16015955	exon
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16022183..16022226	exon
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16022241..16022286	exon
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16022735..16022761	exon
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16026958..16027248	exon
CcUC06G119490.1-exon	CcUC06G119490.1-exon-CicolChr06:16027320..16027373	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16014543..16015955	CDS
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16022183..16022226	CDS
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16022241..16022286	CDS
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16022735..16022761	CDS
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16026958..16027248	CDS
CcUC06G119490.1-cds	CcUC06G119490.1-cds-CicolChr06:16027320..16027373	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G119490.1	CcUC06G119490.1-protein	polypeptide