CcUC06G119370.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC06G119370.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	F-box domain-containing protein
Location	CicolChr06: 15612398 .. 15613681 (-)
Sequence length	837
RNA-Seq Expression	CcUC06G119370.1
Synteny	CcUC06G119370.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCATACGGTTCCGCCTTAAAGCCTTAAAGAAGGGAAGGGGAGGAGCTGTTATCTATGTAATTACGGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTCTTTGTCAAATTCCGTCTTACCAAACAAGACTGACTTCTGACCAACCCGCGAAGGGTTGTGAAGTTGGACCAGGTACGAAGAATGAATCTATATCTGTGTACGGAAGTTGCTGGCCGGCGGCCGCTCAACTGTTCGAGCGTTTTCCTTTCTCCTATTATTAGAGTGGGGTGGTTGGTTCCGATTCGACAAGGGTCGAATACCTGGTCGAAGGTCCAGTACAGTAGGTAGCAGGCGTTTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCAGCTACGTACGTTGACCTTGACTTGACAGATTCATCCAATTGAACCCACACTAAAAGGAGGACCACAAGCTCGGGGCTCGACGAAACGGAAAGTATCAGCATGTTGAAACTTCTTGGGGTTAGCAGTGAAAGAAAGAGCCCGGCATTCATTTCTTCATTCATATTCATAGCTTAGTCTACTAAAATCAAAGGGGGACCAGCCTCATCGTGGTAATTAGAGGACATCTTGGATCGTTCACCTCTAATGTGACACGTTCCCTCCCAGTTATATGATCAACGGGATCAGTCGTCCCTCGAGCGGGGCTCTTTTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACGGATCGAACCCCCTTTCTCTAATAAGTCGGAGGTCTTCGTAAACATGTTAAAGGGCTCCCGTCTTCGGCGGGTCACCTTTCCAAGACTGAGAAAGGCGAACATCTGGGCAAGGGAAAGCGCGGTGTGCCTGGTGCAAATGGCTTTCTTTTTTCATGATATACCAATCAGAATGGAGGGCCCCCCTACGTACATGATTGATAGAATCACTACGTAGGGGGGGTCGGTCAACTTGATGCGAGAGAGGCATGAGTGCTGTTCGATCTTGTGGTGTATTCGTTTGTAGTGAGTAGGGCCTCTTTCTCGTTGATCAGTTCGCCTCCGCTCGAGGGAAAGGTCTCCATTCCTACGGCGGTTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCCAAAAGGGGCTGCTGCGGTCGAACTCGAATTCTGGAAATCCGTCGGGGCCCTTTTACCAAGTCTACCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATC

mRNA sequence

GCCATACGGTTCCGCCTTAAAGCCTTAAAGAAGGGAAGGGGAGGAGCTGTTATCTATGTAATTACGGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTCTTTGTCAAATTCCGTCTTACCAAACAAGACTGACTTCTGACCAACCCGCGAAGGGTTGTGAAGTTGGACCAGGTACGAAGAATGAATCTATATCTGTGTACGGAAGTTGCTGGCCGGCGGCCGCTCAACTGTTCGAGCAGTGGGGTGGTTGGTTCCGATTCGACAAGGGTCGAATACCTGGTCGAAGGTCCAGTACAGTAGGTAGCAGGCGTTTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCAGCTACGTACTTATATGATCAACGGGATCAGTCGTCCCTCGAGCGGGGCTCTTTTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACGGATCGAACCCCCTTTCTCTAATAAGTCGGAGGTCTTCGTAAACATGTTAAAGGGCTCCCGTCTTCGGCGGGTCACCTTTCCAAGACTGAGAAAGGCGAACATCTGGGCAAGGGAAAGCGCGGGCCTCTTTCTCGTTGATCAGTTCGCCTCCGCTCGAGGGAAAGGTCTCCATTCCTACGGCGGTTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCCAAAAGGGGCTGCTGCGGTCGAACTCGAATTCTGGAAATCCGTCGGGGCCCTTTTACCAAGTCTACCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATC

Coding sequence (CDS)

GCCATACGGTTCCGCCTTAAAGCCTTAAAGAAGGGAAGGGGAGGAGCTGTTATCTATGTAATTACGGTCTTTGTTGGCCGTTGTTCCGGTCGAGCACTCTCTTTTCTTTGTCAAATTCCGTCTTACCAAACAAGACTGACTTCTGACCAACCCGCGAAGGGTTGTGAAGTTGGACCAGGTACGAAGAATGAATCTATATCTGTGTACGGAAGTTGCTGGCCGGCGGCCGCTCAACTGTTCGAGCAGTGGGGTGGTTGGTTCCGATTCGACAAGGGTCGAATACCTGGTCGAAGGTCCAGTACAGTAGGTAGCAGGCGTTTTCGTTTTGGCTCCCGAGCGAGAACGAGAAATAGGCGATGCACCATCCTTGCAGCTACGTACTTATATGATCAACGGGATCAGTCGTCCCTCGAGCGGGGCTCTTTTTCTTCCGGGGAGGCAAAGTCGTCCCCTCTACGGATCGAACCCCCTTTCTCTAATAAGTCGGAGGTCTTCGTAAACATGTTAAAGGGCTCCCGTCTTCGGCGGGTCACCTTTCCAAGACTGAGAAAGGCGAACATCTGGGCAAGGGAAAGCGCGGGCCTCTTTCTCGTTGATCAGTTCGCCTCCGCTCGAGGGAAAGGTCTCCATTCCTACGGCGGTTTTGTCAACGAACGCGTCTCGGGCCGGGAACTTGATCCCCCCAAAAGGGGCTGCTGCGGTCGAACTCGAATTCTGGAAATCCGTCGGGGCCCTTTTACCAAGTCTACCGTCTCGAAGATGATAGAGGGCCAATTATCGTTGCGTTGCACAAGACGGTGCCGTCTCACTTCGAGTGCCTTCCTTCGTAGTCAAATC

Protein sequence

AIRFRLKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNESISVYGSCWPAAAQLFEQWGGWFRFDKGRIPGRRSSTVGSRRFRFGSRARTRNRRCTILAATYLYDQRDQSSLERGSFSSGEAKSSPLRIEPPFSNKSEVFVNMLKGSRLRRVTFPRLRKANIWARESAGLFLVDQFASARGKGLHSYGGFVNERVSGRELDPPKRGCCGRTRILEIRRGPFTKSTVSKMIEGQLSLRCTRRCRLTSSAFLRSQI

Homology

[Close]

BLAST of CcUC06G119370.1 vs. NCBI nr
Match: KAF3614258.1 (putative pentatricopeptide repeat-containing protein-like [Capsicum annuum])

HSP 1 Score: 155.2 bits (391), Expect = 8.1e-34
Identity = 81/111 (72.97%), Postives = 90/111 (81.08%), Query Frame = 0


Query: 5   RLKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNE 64
           RLKAL++ RGG VIYVITVFV  CSGRALSF+C IPSYQTRLT  QPAKGCEV PGT+NE
Sbjct: 66  RLKALRR-RGGVVIYVITVFVSHCSGRALSFICSIPSYQTRLTYYQPAKGCEVRPGTRNE 125

Query: 65  SISVYGSCWPAAAQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRAR 115
           SI V+GS WPAA QLFE+    WFR  KGR+PGRR STVGSR  RFGS+ +
Sbjct: 126 SIFVHGSFWPAAVQLFERNAVCWFRLGKGRMPGRRFSTVGSRLVRFGSQLK 175

[Close]

BLAST of CcUC06G119370.1 vs. NCBI nr
Match: CAA3033717.1 (hypothetical protein TSUD_199210 [Olea europaea subsp. europaea])

HSP 1 Score: 152.5 bits (384), Expect = 5.3e-33
Identity = 77/93 (82.80%), Postives = 82/93 (88.17%), Query Frame = 0


Query: 45  RLTSDQPAKGCEVGPGTKNESISVYGSCWPAAAQLFEQWGGWFRFDKGRIPGRRSSTVGS 104
           RLTSDQPAK CE  PGTKNESISVYGSCWPAAAQLFE+   WFRFDKGR+PGRRSSTVGS
Sbjct: 21  RLTSDQPAKACEAEPGTKNESISVYGSCWPAAAQLFER-NAWFRFDKGRMPGRRSSTVGS 80

Query: 105 RRFRFGSRARTRNRRCTILAATYLY-DQRDQSS 137
           RR RFGSRARTRNRRCTILAATY++ D  D S+
Sbjct: 81  RRVRFGSRARTRNRRCTILAATYVFLDLTDSSN 112

[Close]

BLAST of CcUC06G119370.1 vs. NCBI nr
Match: KAF3637818.1 (putative pentatricopeptide repeat-containing protein-like [Capsicum annuum])

HSP 1 Score: 151.8 bits (382), Expect = 9.0e-33
Identity = 80/110 (72.73%), Postives = 88/110 (80.00%), Query Frame = 0


Query: 6   LKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNES 65
           LKAL++ RGG VIYV TVFV  CSGRALSFLC I  YQTRLT  QPAKGCEV PGT+NES
Sbjct: 341 LKALRR-RGGVVIYVFTVFVSHCSGRALSFLCSILPYQTRLTYYQPAKGCEVRPGTRNES 400

Query: 66  ISVYGSCWPAAAQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRAR 115
           I V+GS WPAA QLFE+    WFR  KGR+PGRRSSTVGSRR RFGS+ +
Sbjct: 401 IFVHGSFWPAAVQLFERNAMCWFRLGKGRMPGRRSSTVGSRRVRFGSQLK 449

[Close]

BLAST of CcUC06G119370.1 vs. NCBI nr
Match: PHT29283.1 (hypothetical protein CQW23_31155 [Capsicum baccatum])

HSP 1 Score: 145.6 bits (366), Expect = 6.5e-31
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   RLKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNE 64
           RLKAL++ RGG VIY ITVFV  CSGRALSFL  IP Y+TRLT  QPAKGCE  PGT+NE
Sbjct: 157 RLKALRR-RGGVVIYEITVFVSPCSGRALSFLRSIPPYKTRLTYYQPAKGCEGRPGTRNE 216

Query: 65  SISVYGSCWPAAAQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRAR 115
           SI V+GS W AAAQLFE+    WF+  KGRIPGRRSSTVGSRR RFGS+ +
Sbjct: 217 SIFVHGSFWSAAAQLFERNAVCWFQLGKGRIPGRRSSTVGSRRLRFGSQLK 266

[Close]

BLAST of CcUC06G119370.1 vs. NCBI nr
Match: GEX73349.1 (hypothetical protein [Tanacetum cinerariifolium])

HSP 1 Score: 132.5 bits (332), Expect = 5.7e-27
Identity = 88/147 (59.86%), Postives = 97/147 (65.99%), Query Frame = 0


Query: 1   AIRFRLKALKKGRGGAVIYVITVFVGRC-SGRALSFLCQIPSYQTRLTSDQPAKGCEVGP 60
           AIRF LK  +KGR     Y+     G C  GRALSFLCQIPSYQTRLTS QPAKGCE GP
Sbjct: 19  AIRFALKT-EKGRSS---YLCN--YGLCWPGRALSFLCQIPSYQTRLTSYQPAKGCEAGP 78

Query: 61  GTKNESISVYGSCWPAAAQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRARTRNR 120
             +  ++ +     PAAAQLFE+        DK R+PGRRSSTVGSRR RFGSRARTRNR
Sbjct: 79  EVRRMNLYLCTE-GPAAAQLFERNAVVLVPIDKSRMPGRRSSTVGSRRVRFGSRARTRNR 138

Query: 121 RCTILAATYLYDQRDQSSLERGSFSSG 146
           RCTILAATY        +   G FSSG
Sbjct: 139 RCTILAATYF-------TRLNGQFSSG 151

[Close]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL
Match: A0A2G2V8H8 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_31155 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 3.1e-31
Identity = 79/111 (71.17%), Postives = 88/111 (79.28%), Query Frame = 0


Query: 5   RLKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNE 64
           RLKAL++ RGG VIY ITVFV  CSGRALSFL  IP Y+TRLT  QPAKGCE  PGT+NE
Sbjct: 157 RLKALRR-RGGVVIYEITVFVSPCSGRALSFLRSIPPYKTRLTYYQPAKGCEGRPGTRNE 216

Query: 65  SISVYGSCWPAAAQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRAR 115
           SI V+GS W AAAQLFE+    WF+  KGRIPGRRSSTVGSRR RFGS+ +
Sbjct: 217 SIFVHGSFWSAAAQLFERNAVCWFQLGKGRIPGRRSSTVGSRRLRFGSQLK 266

[Close]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL
Match: A0A494G8Y5 (Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 2.6e-30
Identity = 69/78 (88.46%), Postives = 74/78 (94.87%), Query Frame = 0


Query: 5   RLKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNE 64
           RLKAL++G GGAVIYVITVFVGRCSGRALSFLC IPSYQTRLTS QPAKGCE GPGT+NE
Sbjct: 38  RLKALRRG-GGAVIYVITVFVGRCSGRALSFLCPIPSYQTRLTSYQPAKGCEAGPGTRNE 97

Query: 65  SISVYGSCWPAAAQLFEQ 83
           SISV+GSCWPAAAQLFE+
Sbjct: 98  SISVHGSCWPAAAQLFER 114

[Close]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL
Match: A0A2G2V295 (Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33270 PE=4 SV=1)

HSP 1 Score: 131.7 bits (330), Expect = 4.7e-27
Identity = 69/99 (69.70%), Postives = 75/99 (75.76%), Query Frame = 0


Query: 17  VIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNESISVYGSCWPAA 76
           V YVITVFV RCSGRA+SFLC I  YQTRLT  QP KGCE  PGT+NESI V+GS WPAA
Sbjct: 248 VFYVITVFVSRCSGRAISFLCSILPYQTRLTYYQPEKGCEGRPGTRNESIFVHGSFWPAA 307

Query: 77  AQLFEQWG-GWFRFDKGRIPGRRSSTVGSRRFRFGSRAR 115
            QLFE+    WFR  KGR+ GRRSSTVGSRR RF S  +
Sbjct: 308 VQLFERNAVCWFRLGKGRMAGRRSSTVGSRRLRFVSELK 346

[Close]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL
Match: A0A6A4P013 (Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0059141 PE=4 SV=1)

HSP 1 Score: 123.6 bits (309), Expect = 1.3e-24
Identity = 68/104 (65.38%), Postives = 72/104 (69.23%), Query Frame = 0


Query: 29  SGRALSFLCQIPSYQTRLTSDQPAKGCEVGPGTKNESISVYG---------SCWPAAAQL 88
           S    S LC I  YQTRLTSDQP KGCEVGPGT NE I VYG         +C  ++A  
Sbjct: 21  SSTPFSLLCPIEYYQTRLTSDQPVKGCEVGPGTNNEYIFVYGTEVVDRRPLNC--SSAND 80

Query: 89  FEQWGGWFRFDKGRIPGRRSSTVGSRRFRFGSRARTRNRRCTIL 124
               GGWFRFDKGR+ GRRSSTVGSRR RFGSRART NRRCTIL
Sbjct: 81  RHIGGGWFRFDKGRMSGRRSSTVGSRRLRFGSRARTINRRCTIL 122

[Close]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL
Match: A0A6B9MKU1 (Uncharacterized protein OS=Sesuvium portulacastrum OX=221166 GN=ORF153 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 1.7e-24
Identity = 63/75 (84.00%), Postives = 64/75 (85.33%), Query Frame = 0


Query: 1   AIRFR-LKALKKGRGGAVIYVITVFVGRCSGRALSFLCQIPSYQTRLTSDQPAKGCEVGP 60
           AIRF  LKA  + RG AVIYVITVFVGRCSGRALSFLC IPSYQTR TS QPAKGCE  P
Sbjct: 56  AIRFLCLKAFFRRRGRAVIYVITVFVGRCSGRALSFLCLIPSYQTRRTSYQPAKGCETEP 115

Query: 61  GTKNESISVYGSCWP 75
           GTKNESISVYGSCWP
Sbjct: 116 GTKNESISVYGSCWP 130

The following BLAST results are available for this feature:

BLAST of CcUC06G119370.1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAF3614258.1	8.1e-34	72.97	putative pentatricopeptide repeat-containing protein-like [Capsicum annuum]	[more]
CAA3033717.1	5.3e-33	82.80	hypothetical protein TSUD_199210 [Olea europaea subsp. europaea]	[more]
KAF3637818.1	9.0e-33	72.73	putative pentatricopeptide repeat-containing protein-like [Capsicum annuum]	[more]
PHT29283.1	6.5e-31	71.17	hypothetical protein CQW23_31155 [Capsicum baccatum]	[more]
GEX73349.1	5.7e-27	59.86	hypothetical protein [Tanacetum cinerariifolium]	[more]

BLAST of CcUC06G119370.1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A2G2V8H8	3.1e-31	71.17	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_31155 PE=4 SV=1	[more]
A0A494G8Y5	2.6e-30	88.46	Uncharacterized protein OS=Solanum lycopersicum OX=4081 PE=4 SV=1	[more]
A0A2G2V295	4.7e-27	69.70	Uncharacterized protein OS=Capsicum baccatum OX=33114 GN=CQW23_33270 PE=4 SV=1	[more]
A0A6A4P013	1.3e-24	65.38	Uncharacterized protein OS=Lupinus albus OX=3870 GN=Lalb_Chr18g0059141 PE=4 SV=1	[more]
A0A6B9MKU1	1.7e-24	84.00	Uncharacterized protein OS=Sesuvium portulacastrum OX=221166 GN=ORF153 PE=4 SV=1	[more]

BLAST of CcUC06G119370.1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC06G119370	CcUC06G119370	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119370.1-exon	CcUC06G119370.1-exon-CicolChr06:15612398..15612655	exon
CcUC06G119370.1-exon	CcUC06G119370.1-exon-CicolChr06:15612825..15613022	exon
CcUC06G119370.1-exon	CcUC06G119370.1-exon-CicolChr06:15613278..15613414	exon
CcUC06G119370.1-exon	CcUC06G119370.1-exon-CicolChr06:15613438..15613681	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC06G119370.1-cds	CcUC06G119370.1-cds-CicolChr06:15612398..15612655	CDS
CcUC06G119370.1-cds	CcUC06G119370.1-cds-CicolChr06:15612825..15613022	CDS
CcUC06G119370.1-cds	CcUC06G119370.1-cds-CicolChr06:15613278..15613414	CDS
CcUC06G119370.1-cds	CcUC06G119370.1-cds-CicolChr06:15613438..15613681	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC06G119370.1	CcUC06G119370.1-protein	polypeptide

GO Annotation

GO Assignments

This mRNA is annotated with the following GO terms.

Category	Term Accession	Term Name
cellular_component	GO:0016021	integral component of membrane
cellular_component	GO:0005739	mitochondrion