CcUC05G106830.1 (mRNA) Watermelon (PI 537277) v1

Overview


Name	CcUC05G106830.1
Type	mRNA
Organism	Citrullus colocynthis (Watermelon (PI 537277) v1)
Description	Unknown protein
Location	CicolChr05: 33908115 .. 33911535 (+)
Sequence length	399
RNA-Seq Expression	CcUC05G106830.1
Synteny	CcUC05G106830.1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGGAGCATCTGATCTAACCCTAAATGTTATGATGCCAGCTCTCATTGAAAGGTGTGGGCATAGGCATATATCTCACAGCCCAGTTCTGAGCCCAAGTATTGGGTGTGTCTCACTGTAAGGTAACTGGAGATGGAAATTGTAGGCCAAGAAATGGGTGGTAGGCCCATTAAGACATCATTGAAATGACATGGGCCTTGATAGTTATCATAATGTCCTGGCCCATTTCAACCCACAACTTTTGTGCAAAGGACAGCAAGTGACAATTGACAACTGAGAACGTGACATTTGTAGTAATGTAATAAATTTTTTTGAAAAGGGTTGCTCAAATGGTAATAATTAATGACTAAAATTTCATGCAAGTCTGCAGTTTGCAGTGAAAAAAGAAAGAAGGCCATCCATTGCCAACTTTTTAACTTACATCCTATTAAGACTTAAGAGAAGAGACCAATTTTTTGGGACCCTCTAAAGGCCTTCAAAATTAAAGCAAATCATTTCATTTGACAGACATGAATGAATTCAGTTTGATGAAGATGGTAGCTTTAAAAAAAATATGGTCCCAATCAAAAACCTATTTCAATCATATAAATATGCATGGAGATATGAGTTTTAACATATGCATTAAAAGTGCTAAGAAAAAGTAATTAGTTAAAATGGAGGGATAAGAGTACATTGGAGTTGAAACTTTAATATGGTAAGTTGGATTAAAAAAAAAAAAAAAAAAAAAAAAANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAAAAAAAAAAAAAAAAAAAAGAAATTGGAAGAAGAATCAAGAAAGTGAATTACTTTAGTTGTTAAGGGTTGTGGGTCTGACAGGTTGGGGAAATTTTGTGGTTTAATTTTGTAGCCCCATGGAAACAAAGTTTGGTGGCAATACAGACTTGGGCAGAGAGAAAGAAAAGGAATAAATTGGATTTTGAGGAAGTGAAGGTAGCTGAGATTTTGCCAGCTTATTCATTCAAGACTTTTGACCATGGTTCAGGATTTGTCTACCTGACTTCTTCAGACTAAAAGCCCACAAAATTAAAAATAAAAATCAAAATAAAATACAAAATTATACAAAAGAAATAAAAATTGAAAAGAAAGATGATCAAGTTATGGGAGGTGGTGTCAAGTCAAGGGGCAGAAATGAGAGAAAGAAGTTCAGTATGCTCTGTTTTGATGAAGAGAAGAAAAAAAAAAAAAAAAAAAAAAAACTCAATAAATGCATCTTTATATAAAGATGTGATAAAGAGAGATATCCCCATTTTTGTTAATTTGACAGAGGGTAACTCTTCCTCTCTTTTTCTTTGAAACTTATAGTTTCTGCTAAAAAACATGGCTGGGGATGGCCCTTCCCTTCACTTCAATTATTAAATCAAATCCTCTACATGTAAGAGTTTAATTAATTGAACTAAAAAAGAAATTATACAATGATCTTTGTGGATATTGTATTTATTAAGCTAAAGTGGGAATATTTATGCAGTGGTGGAGCAGTGTGCCCCCAAGTAAAAGACATGATTACAGAGAAAAAACATCAATGGAGTTTGATTTTGTATTGATTATTGGAAACAGTATTCAGAGTAGTAGGTTGTGATTTGAGACTTGAGAGGGTGTGATATAAATTTTGGGTAGTGGGATTTTGATTTATTGGTTAGCATTTGAATACAAATTGTCTGCACACTGATGTACAAACATCAAGAGTTGTATAAACAGTGAAATGTTTTTGTTGAACAGTGAAATCAAAGTGAGAAGAATTGGTGGCTATTCGCGTTCTTATTTTCTTTGTCTTGGGCTTTGTTGCGGGTATTTGGTGTCCTTGACCTCTACTCTACTTTTCTTTAGTTTGATCTCTATATTTATATCTTCTTAGCTGACTTCTGTAAAAAATATTTATACCAATGTGGTGCTGAGTCTATTAGACTCCTCTAATGTTTAAGTTAGTATAAGTATAAGGTAAGATCTCTTCCTTTAATATTCCTCTTTTGGGTGGTCAAATGAGACTATTTGTAAACATGTCCTCGACTAGGCTACATGTGATGTTCTAGGGTTGCATAGTTTTATTTTGCAATTGGTATATATTTACTAGTTTGGCTGGTTGGCCCAAACTCAGAGACACTTGACATTTTCTTTTAGGGACGCACGTTCTTCTAGCACCTTTTGTCCATTAACTTTGAACTTTGGGTTGGACAAGTCGGCATTAAATTGAACGTGTAATTAGGTGTCACAAAATTTGATAAATTCATGTTTTTTTTTTTTTTTTTAATCTTTTTAATGAAATTGGTTACAAAGAGTAATAGAAATGGGAAAGGGCATAGGATTCTCAAAAGCATTCTCTTTAGGAAGAGCGTGCTTGTATAAAAGATAGGGAAAGAAAGTGAATGAAGTGTAAAAAATCTAACAATGATCTTAAAAAGGTGGCTCCAATATCCAGGAAATGGGGTGCCCACATTGTTGGAATCCCCAAGCAAGTGA

mRNA sequence

ATGGGAGCATCTGATCTAACCCTAAATGTTATGATGCCAGCTCTCATTGAAAGGTGTGGGCATAGGCATATATCTCACAGCCCAGTTCTGAGCCCAAGTATTGGGTGTGTCTCACTTAATGTAATAAATTTTTTTGAAAAGGGTTGCTCAAATGCCCCATGGAAACAAAGTTTGGTGGCAATACAGACTTGGGCAGAGAGAAAGAAAAGGAATAAATTGGATTTTGAGGAAGTGAAGTGGTGGAGCAGTGTGCCCCCAAGTAAAAGACATGATTACAGAGAAAAAACATCAATGGAGTTTGATTTTGTATTGATTATTGGAAACAGTATTCAGAGTAGTAGGTGGCTCCAATATCCAGGAAATGGGGTGCCCACATTGTTGGAATCCCCAAGCAAGTGA

Coding sequence (CDS)

ATGGGAGCATCTGATCTAACCCTAAATGTTATGATGCCAGCTCTCATTGAAAGGTGTGGGCATAGGCATATATCTCACAGCCCAGTTCTGAGCCCAAGTATTGGGTGTGTCTCACTTAATGTAATAAATTTTTTTGAAAAGGGTTGCTCAAATGCCCCATGGAAACAAAGTTTGGTGGCAATACAGACTTGGGCAGAGAGAAAGAAAAGGAATAAATTGGATTTTGAGGAAGTGAAGTGGTGGAGCAGTGTGCCCCCAAGTAAAAGACATGATTACAGAGAAAAAACATCAATGGAGTTTGATTTTGTATTGATTATTGGAAACAGTATTCAGAGTAGTAGGTGGCTCCAATATCCAGGAAATGGGGTGCCCACATTGTTGGAATCCCCAAGCAAGTGA

Protein sequence

MGASDLTLNVMMPALIERCGHRHISHSPVLSPSIGCVSLNVINFFEKGCSNAPWKQSLVAIQTWAERKKRNKLDFEEVKWWSSVPPSKRHDYREKTSMEFDFVLIIGNSIQSSRWLQYPGNGVPTLLESPSK

Homology

The following BLAST results are available for this feature:

BLAST of CcUC05G106830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106830.1 vs.


Match Name	E-value	Identity	Description

BLAST of CcUC05G106830.1 vs.


Match Name	E-value	Identity	Description

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Type
CcUC05G106830	CcUC05G106830	gene

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106830.1-exon	CcUC05G106830.1-exon-CicolChr05:33908115..33908230	exon
CcUC05G106830.1-exon	CcUC05G106830.1-exon-CicolChr05:33908408..33908445	exon
CcUC05G106830.1-exon	CcUC05G106830.1-exon-CicolChr05:33909929..33910011	exon
CcUC05G106830.1-exon	CcUC05G106830.1-exon-CicolChr05:33910547..33910650	exon
CcUC05G106830.1-exon	CcUC05G106830.1-exon-CicolChr05:33911478..33911535	exon

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Type
CcUC05G106830.1-cds	CcUC05G106830.1-cds-CicolChr05:33908115..33908230	CDS
CcUC05G106830.1-cds	CcUC05G106830.1-cds-CicolChr05:33908408..33908445	CDS
CcUC05G106830.1-cds	CcUC05G106830.1-cds-CicolChr05:33909929..33910011	CDS
CcUC05G106830.1-cds	CcUC05G106830.1-cds-CicolChr05:33910547..33910650	CDS
CcUC05G106830.1-cds	CcUC05G106830.1-cds-CicolChr05:33911478..33911535	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Type
CcUC05G106830.1	CcUC05G106830.1-protein	polypeptide