Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TTATTGTGTGAAGGTTGTGAAGCTCTGAGTAATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATCAAAAACTCATAGAGACGAATCGAAGAAAGGAAATGAGAGAGCTTCTCTCAAAATTTAATTCCCTCGTTCCCCATGAAAGTTCAAAGGTTTTTTTTTTTTTTTTTTTTCTCTCTTTTTAATTTATATATATGACTATATCTTATTATATTATTTTTAGTAAAAATTTTGAATAATGTTTGTGTGCAGGAAGCAAGAACAGTGGTGGATGAGGTAGAAGACGTTACGAATTACATAAAAGAATTGCAGAACCACATTGAGAAACTAAAAGAAAAAAAAGAGAAGCTAATGGGGAAATATAAAATGGTTGAGTTAGAAGATGGAAGAAGAAGTAGAAAGAAACATGAAGAAACCAAACCCAACCCCAAATTATTGGTGCAAGTTAAAGCTCATCAACTGGATTCTTCACTGCACATCCTTTTAACCACCGGATCTGATTATCACTCTATTCTTCAACAAATCCTTCTCCTCCTCCATGATAATGGAACTGACACCCTCCATGTCAATCAGACAAGGGTCAAACATCGGGTTTTTCACACAATTGTAGCTAAGGTAATTTAGATCTCGTTTAATAACTATTTTACTTCTAACACTATTCTACCTTCAAAGTTCAAACCATTTGCAATAAAACAAACTTTGTTATTATATTTTTTTATTAAGAAAAATGGTTTTTAAAAATTTCTTTTTATTTTTGAAATTTAGTTAAAAATTCACAAATTCAAATTTGTGAAAAAACTTGCAGATTTTTTTTTTTTAAAAAATGAAACAGCTAAATGATTATTTATTTTCCTTTCAACTTTTTGGTGTCTCACACAAATTAATTTTATAAAATGTGTTTAATTCATTTCATAAATAATTATTAAGAGGACAATTTGTTGTTTCATGGTTGAAAATTTGATTTCCCGCACTAGAAACTTGTGGAATTCAAAAAAGAGAATGGAAAATGGGAAAAAAAAAGTCACGTGGGTTATCTTGTTATCTACAAAAATAATTCACGTATGGAAATAAATATATATATTTTTTATCGTTTTTTTTTTTTTCTTCTTCTTTTTGAGTTCTTATCCATTAGGTTTGTGAAGATACCAGAGAAATGGTAGAAACCACGGAGAGGGAAGGAAAAGAGAGTTTTTTTTTTTAAGGTCAAATAATTAACATTTACGTTCAATTTGAAAACTGTTTTAATTTTGTATAATTAACAGATACGTGTTTTTTAAAACTAATTTATTGTTTATTCTAAACCTGACTTAAAATTTGAAAATGTTGTAGACAATAAAACAAGTGAACACTTGGATGGAAGTAGTATACTTAATTTTAAAAAATAAGAAACCAAAAAAAATTCTATTGTTTTCTCACAGTTATTTTGCAATAGTCTTCATATTTTTTAAGGTAATATATGAATCCGGTTAAAAAGACTATTTTTTAAGACTTCGTTTGGTAATTAATTATTTTTAGTTTTCGAAAATTAACCCTTAAACATTTTTTTCACCTTCAAATTTTTTGTATTTATTATATACTTTTTATCAATATTTTCAAAAACTATGAAAATTTTTTAGACAGAAAATTAATTTTAAAAAAATAATTTTTGTTATTAAGAATTTGACTGTTTTAAAATTACTATAAAAAATTGAGAAAAAATATATACTTAATTTTTTAAAACTTGAAACCAAAATCCAAATAGTTATTAAACTAGGTTGAATTAGTTTTGAAGGTTTGAATTTAAAAACCATGAAAATAGTGTTTCCAAGTTTAATTTTCCAAAACTCAAATAACATTTCAAACAACGTCAAAATTTTAATATTGGTTTCATCCATAAATTTCATGCCTACAAACTATATCTTTTGATTTTGTTCTCATTTACTATTGGAAAACGTAAGAATTAATTTAACATTTTTTTTTTCCTGAATCATTTTCTCATATTTCTTATTTGGGAATGCACGTAATAATAATGCTAATTAATATTAGGGCAAATAACAATTTATACCCCTAAACTTTGGAGGATATATCAACTTAAATCCTAAACTAATAATCGTATCAACTTAAACTTTGAACTTTCATAAATGTGTCGATTTTAACCCGAATTAATAGTTGTATTAGTTTAAACCCTAAACTTTCATAAGTGTATCAATTGAAATCCTCCATTATGTTTTATTTGGATACGGTTATAAAAGTTTAGAGTTTAAATTGATATACTTATGAAAGTTTAAGGTTTAAATTGACACATATAATTATTAGTTTGGGGTTTAAATCGATACAAACCTCAAAATTTAGGATTTAAATTGATACAATCAATTAGTTTGAGAGTTCCAATTGATACAATCTCCAAAGCTTAGGATATAAATTGATATAACATTATAGTGTGGGAGAAAAAAATGATGATAATATATTGCAAATTTAGGTGGATGGAGAAGGAATGGGGGCAGAAGATGGTGAAAGGATTTGTGAGACAGTGAAGAATTTAGTTTCAGAGTACAGAGATGGTGAATGCACTCTTTAATAATATTTCGACCACAACGTTAAACTGCTCGTGAAGATTTATGATGTCTTTTGTCCTTCTTTTTATTATTTTTTTAATTATTTTTATTTTTATTTTTTATTGATAATGCTTCAAATCAACACATTCAATAGTTTGCATTTATTGTAATGCATTATAACCCTTTGCCATGGTGAACTTCTCAGACAATTATTTGCTTCC
mRNA sequence
TTATTGTGTGAAGGTTGTGAAGCTCTGAGTAATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATCAAAAACTCATAGAGACGAATCGAAGAAAGGAAATGAGAGAGCTTCTCTCAAAATTTAATTCCCTCGTTCCCCATGAAAGTTCAAAGGAAGCAAGAACAGTGGTGGATGAGGTAGAAGACGTTACGAATTACATAAAAGAATTGCAGAACCACATTGAGAAACTAAAAGAAAAAAAAGAGAAGCTAATGGGGAAATATAAAATGGTTGAGTTAGAAGATGGAAGAAGAAGTAGAAAGAAACATGAAGAAACCAAACCCAACCCCAAATTATTGGTGCAAGTTAAAGCTCATCAACTGGATTCTTCACTGCACATCCTTTTAACCACCGGATCTGATTATCACTCTATTCTTCAACAAATCCTTCTCCTCCTCCATGATAATGGAACTGACACCCTCCATGTCAATCAGACAAGGGTCAAACATCGGGTTTTTCACACAATTGTAGCTAAGGTGGATGGAGAAGGAATGGGGGCAGAAGATGGTGAAAGGATTTGTGAGACAGTGAAGAATTTAGTTTCAGAGTACAGAGATGGTGAATGCACTCTTTAATAATATTTCGACCACAACGTTAAACTGCTCGTGAAGATTTATGATGTCTTTTGTCCTTCTTTTTATTATTTTTTTAATTATTTTTATTTTTATTTTTTATTGATAATGCTTCAAATCAACACATTCAATAGTTTGCATTTATTGTAATGCATTATAACCCTTTGCCATGGTGAACTTCTCAGACAATTATTTGCTTCC
Coding sequence (CDS)
ATGGCGAACAACCCTATCCGTTGTGCACCATCTTCACAAACCGATCAAAAACTCATAGAGACGAATCGAAGAAAGGAAATGAGAGAGCTTCTCTCAAAATTTAATTCCCTCGTTCCCCATGAAAGTTCAAAGGAAGCAAGAACAGTGGTGGATGAGGTAGAAGACGTTACGAATTACATAAAAGAATTGCAGAACCACATTGAGAAACTAAAAGAAAAAAAAGAGAAGCTAATGGGGAAATATAAAATGGTTGAGTTAGAAGATGGAAGAAGAAGTAGAAAGAAACATGAAGAAACCAAACCCAACCCCAAATTATTGGTGCAAGTTAAAGCTCATCAACTGGATTCTTCACTGCACATCCTTTTAACCACCGGATCTGATTATCACTCTATTCTTCAACAAATCCTTCTCCTCCTCCATGATAATGGAACTGACACCCTCCATGTCAATCAGACAAGGGTCAAACATCGGGTTTTTCACACAATTGTAGCTAAGGTGGATGGAGAAGGAATGGGGGCAGAAGATGGTGAAAGGATTTGTGAGACAGTGAAGAATTTAGTTTCAGAGTACAGAGATGGTGAATGCACTCTTTAA
Protein sequence
MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEARTVVDEVEDVTNYIKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLHILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAEDGERICETVKNLVSEYRDGECTL
Homology
BLAST of CcUC05G106230.1 vs. NCBI nr
Match:
XP_008442634.2 (PREDICTED: transcription factor bHLH118-like [Cucumis melo])
HSP 1 Score: 228.4 bits (581), Expect = 5.3e-56
Identity = 122/198 (61.62%), Postives = 155/198 (78.28%), Query Frame = 0
Query: 3 NNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEA-RTVVDEVEDVTNYIK 62
+NPIRC P+ Q+D+K +E NRRKEM+ L S NSL+P+ +S+EA RTV D++ED TNYIK
Sbjct: 2 SNPIRCQPTPQSDRKFVERNRRKEMKSLFSTLNSLLPNHTSREAPRTVPDQLEDATNYIK 61
Query: 63 ELQNHIEKLKEKKEKLMGKYKMVELE--DGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 122
ELQ +I+KLKEKKE+LMGK KM E E +GRR R+ ETK PKLL+QVKAHQ+ SS+
Sbjct: 62 ELQKNIQKLKEKKEELMGKNKMEEDEEAEGRRRRRFEHETK--PKLLLQVKAHQIGSSVE 121
Query: 123 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAEDGERI 182
+ LTTGSDYH ILQQ+L LL DNG + L+VNQ+ RVFH I A+VDGEG+G DGERI
Sbjct: 122 VFLTTGSDYHFILQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIGPGDGERI 181
Query: 183 CETVKNLVSEYRDGECTL 198
C+TVK VS+Y+D +C++
Sbjct: 182 CKTVKKFVSQYKDEQCSV 197
BLAST of CcUC05G106230.1 vs. NCBI nr
Match:
XP_004146605.1 (transcription factor bHLH162 isoform X1 [Cucumis sativus] >KGN64684.1 hypothetical protein Csa_013539 [Cucumis sativus])
HSP 1 Score: 218.4 bits (555), Expect = 5.5e-53
Identity = 120/197 (60.91%), Postives = 149/197 (75.63%), Query Frame = 0
Query: 3 NNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEA-RTVVDEVEDVTNYIK 62
+NPIRC P+ Q+++K +E NRRKEM+ L S NSL+P+++S EA RTV D++ED TNYIK
Sbjct: 2 SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61
Query: 63 ELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLHIL 122
ELQ +I+KLKEKKEKLMG + E E RR R +ETK PKL V VKAHQ+ SS+ +
Sbjct: 62 ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETK--PKLSVHVKAHQIGSSVEVF 121
Query: 123 LTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGAEDGERIC 182
LTTGSDYH LQQ+L LL DNG + L+VNQ+ RVFH I A+VDGEG +G DGERIC
Sbjct: 122 LTTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERIC 181
Query: 183 ETVKNLVSEYRDGECTL 198
ETVK VSEY+DGEC++
Sbjct: 182 ETVKKYVSEYKDGECSV 196
BLAST of CcUC05G106230.1 vs. NCBI nr
Match:
XP_038876951.1 (transcription factor bHLH162-like [Benincasa hispida] >XP_038876952.1 transcription factor bHLH162-like [Benincasa hispida] >XP_038876954.1 transcription factor bHLH162-like [Benincasa hispida] >XP_038876955.1 transcription factor bHLH162-like [Benincasa hispida] >XP_038876956.1 transcription factor bHLH162-like [Benincasa hispida])
HSP 1 Score: 215.7 bits (548), Expect = 3.6e-52
Identity = 122/204 (59.80%), Postives = 151/204 (74.02%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEARTVVDEVEDVTNYI 60
MANNPI C PS KLIE N R+EM+ L S NSL+P+++S EARTV D++E+ TNYI
Sbjct: 1 MANNPICCPPS-----KLIERNGRREMKALFSTLNSLLPNQNSGEARTVPDQLEEATNYI 60
Query: 61 KELQNHIEKLKEKKEKL------MGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQL 120
KELQN+IE+LKEKKEKL GKYKM ED +R + KHE P LL+QVKAH++
Sbjct: 61 KELQNNIERLKEKKEKLKQKQKVKGKYKMGVEEDEKRRKCKHE---IEPNLLLQVKAHRV 120
Query: 121 DSSLHILLTTG-SDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGA 180
SS+ + LTTG SDYH ILQQI+ LL NG L++NQ+ ++HR FH I A+VDGEGM
Sbjct: 121 GSSVEVFLTTGISDYHFILQQIIRLLQHNGAHILNLNQSILQHRAFHKITAQVDGEGMVP 180
Query: 181 EDGERICETVKNLVSEYRDGECTL 198
EDGERICETVKN VS+Y+DG+C+L
Sbjct: 181 EDGERICETVKNFVSQYKDGQCSL 196
BLAST of CcUC05G106230.1 vs. NCBI nr
Match:
XP_023542777.1 (uncharacterized protein LOC111802586 [Cucurbita pepo subsp. pepo])
HSP 1 Score: 184.5 bits (467), Expect = 8.9e-43
Identity = 108/195 (55.38%), Postives = 144/195 (73.85%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEAR-TVVDEVEDVTNY 60
MANN I C S++ D+KLIE NRR EM+ L S+ +SLVP++SS EA T++D++E+ TNY
Sbjct: 1 MANNFIHCPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 60
Query: 61 IKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 120
IK+L+ ++EKLKEKKEKLM K+ E E RRS K +LLVQV+AHQ+ SSL
Sbjct: 61 IKQLKENVEKLKEKKEKLM---KLGE-ESARRSEIK-------ARLLVQVEAHQVGSSLE 120
Query: 121 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAE--DGE 180
LLTTGS+YH +L+QIL LL +NGT +++N + VK RVFH I+A++ GEG +E +GE
Sbjct: 121 FLLTTGSEYHLVLKQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTEGE 180
Query: 181 RICETVKNLVSEYRD 193
RICETVK VS+Y+D
Sbjct: 181 RICETVKKFVSQYKD 184
BLAST of CcUC05G106230.1 vs. NCBI nr
Match:
KAG6573268.1 (Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma subsp. sororia])
HSP 1 Score: 183.3 bits (464), Expect = 2.0e-42
Identity = 107/195 (54.87%), Postives = 143/195 (73.33%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEAR-TVVDEVEDVTNY 60
MANN I C S++ D+KLIE NRR EM+ L S+ +SLVP++SS EA T++D++E+ TNY
Sbjct: 22 MANNFIHCPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81
Query: 61 IKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 120
IK+L+ ++EKLKEKKEKLM K+ E E R S K +LLVQV+AHQ+ SSL
Sbjct: 82 IKQLKENVEKLKEKKEKLM---KLGE-ESARSSEIK-------ARLLVQVEAHQVGSSLE 141
Query: 121 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAE--DGE 180
LLTTGSDYH +L+Q+L LL +NGT +++N + VK RVFH I+A++ GEG +E +GE
Sbjct: 142 FLLTTGSDYHLVLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGE 201
Query: 181 RICETVKNLVSEYRD 193
RICETVK VS+Y+D
Sbjct: 202 RICETVKKFVSQYKD 205
BLAST of CcUC05G106230.1 vs. ExPASy Swiss-Prot
Match:
F4JIJ7 (Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=1)
HSP 1 Score: 82.8 bits (203), Expect = 4.8e-15
Identity = 55/179 (30.73%), Postives = 95/179 (53.07%), Query Frame = 0
Query: 11 SSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEARTVVDEVEDVTNYIKELQNHIEKL 70
S D+K +E NRR +M+ L S+ SL+PH SS E T+ D++++ NYIK+LQ ++EK
Sbjct: 11 SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVNVEKK 70
Query: 71 KEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLHILLTTGSDYHS 130
+E+K L+ + +L S P+ L +++ + S HI L T ++
Sbjct: 71 RERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKF 130
Query: 131 ILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAEDGERICETVKNLVS 189
+ +I+ +L + G + H + V VFHT+ KV+ GA +I E ++ +V+
Sbjct: 131 MFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGAR--SQIPERLEKIVN 187
BLAST of CcUC05G106230.1 vs. ExPASy TrEMBL
Match:
A0A1S3B660 (transcription factor bHLH118-like OS=Cucumis melo OX=3656 GN=LOC103486444 PE=4 SV=1)
HSP 1 Score: 228.4 bits (581), Expect = 2.6e-56
Identity = 122/198 (61.62%), Postives = 155/198 (78.28%), Query Frame = 0
Query: 3 NNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEA-RTVVDEVEDVTNYIK 62
+NPIRC P+ Q+D+K +E NRRKEM+ L S NSL+P+ +S+EA RTV D++ED TNYIK
Sbjct: 2 SNPIRCQPTPQSDRKFVERNRRKEMKSLFSTLNSLLPNHTSREAPRTVPDQLEDATNYIK 61
Query: 63 ELQNHIEKLKEKKEKLMGKYKMVELE--DGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 122
ELQ +I+KLKEKKE+LMGK KM E E +GRR R+ ETK PKLL+QVKAHQ+ SS+
Sbjct: 62 ELQKNIQKLKEKKEELMGKNKMEEDEEAEGRRRRRFEHETK--PKLLLQVKAHQIGSSVE 121
Query: 123 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAEDGERI 182
+ LTTGSDYH ILQQ+L LL DNG + L+VNQ+ RVFH I A+VDGEG+G DGERI
Sbjct: 122 VFLTTGSDYHFILQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGIGPGDGERI 181
Query: 183 CETVKNLVSEYRDGECTL 198
C+TVK VS+Y+D +C++
Sbjct: 182 CKTVKKFVSQYKDEQCSV 197
BLAST of CcUC05G106230.1 vs. ExPASy TrEMBL
Match:
A0A0A0LUL3 (BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G074400 PE=4 SV=1)
HSP 1 Score: 218.4 bits (555), Expect = 2.7e-53
Identity = 120/197 (60.91%), Postives = 149/197 (75.63%), Query Frame = 0
Query: 3 NNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEA-RTVVDEVEDVTNYIK 62
+NPIRC P+ Q+++K +E NRRKEM+ L S NSL+P+++S EA RTV D++ED TNYIK
Sbjct: 2 SNPIRCQPTPQSNRKFVERNRRKEMKALFSTLNSLLPNQTSMEAPRTVPDQLEDATNYIK 61
Query: 63 ELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLHIL 122
ELQ +I+KLKEKKEKLMG + E E RR R +ETK PKL V VKAHQ+ SS+ +
Sbjct: 62 ELQKNIKKLKEKKEKLMGMEEDEEAEGRRRRRGYEDETK--PKLSVHVKAHQIGSSVEVF 121
Query: 123 LTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEG-MGAEDGERIC 182
LTTGSDYH LQQ+L LL DNG + L+VNQ+ RVFH I A+VDGEG +G DGERIC
Sbjct: 122 LTTGSDYHFNLQQVLRLLQDNGAEILNVNQSMFTDRVFHKITAQVDGEGILGGGDGERIC 181
Query: 183 ETVKNLVSEYRDGECTL 198
ETVK VSEY+DGEC++
Sbjct: 182 ETVKKYVSEYKDGECSV 196
BLAST of CcUC05G106230.1 vs. ExPASy TrEMBL
Match:
A0A6J1K2Y3 (transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE=4 SV=1)
HSP 1 Score: 181.8 bits (460), Expect = 2.8e-42
Identity = 104/195 (53.33%), Postives = 139/195 (71.28%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEAR-TVVDEVEDVTNY 60
MANN I C S++ D+KLIE NRR EM+ L S+ +SLVP++SS EA T++D++E+ TNY
Sbjct: 22 MANNFIHCPSSTKIDRKLIERNRRAEMKALFSRLHSLVPNQSSTEAETTLLDQLENATNY 81
Query: 61 IKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 120
IK+L+ ++EKLKEK+EKLMG + ETK +LLVQV+AHQ+ SSL
Sbjct: 82 IKQLKENVEKLKEKREKLMG--------------SREGETK--ARLLVQVEAHQVGSSLE 141
Query: 121 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAED--GE 180
+LLTTGSDY +L QIL LL +NGT +++N + VK RVFH I+A++ GEG +E GE
Sbjct: 142 VLLTTGSDYQFVLNQILQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESTKGE 200
Query: 181 RICETVKNLVSEYRD 193
RICETVK VS+Y+D
Sbjct: 202 RICETVKKFVSQYKD 200
BLAST of CcUC05G106230.1 vs. ExPASy TrEMBL
Match:
A0A6J1GT92 (uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC111457229 PE=4 SV=1)
HSP 1 Score: 176.4 bits (446), Expect = 1.2e-40
Identity = 105/195 (53.85%), Postives = 141/195 (72.31%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEAR-TVVDEVEDVTNY 60
MANN I S++ D+KLIE NRR EM+ L S+ +SLVP++SS EA T++D++E+ TNY
Sbjct: 22 MANNFIHSPSSAKIDRKLIERNRRAEMKALFSRLHSLVPNQSSMEAETTLLDQLENATNY 81
Query: 61 IKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 120
IK+L+ ++EKLKEKKEKLM K+ E E R S K +LLVQV+AHQ+ SSL
Sbjct: 82 IKQLKENVEKLKEKKEKLM---KLGE-ESARSSEIK-------ARLLVQVEAHQVGSSLE 141
Query: 121 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAE--DGE 180
LLTT SDYH +L+Q+L LL +NGT +++N + VK RVFH I+A++ GEG +E +GE
Sbjct: 142 FLLTTRSDYHLVLKQVLQLLQENGTQIVYINHSTVKDRVFHKIIAEMVGEGTTSESIEGE 201
Query: 181 RICETVKNLVSEYRD 193
RICETVK VS+Y+D
Sbjct: 202 RICETVKKFVSQYKD 205
BLAST of CcUC05G106230.1 vs. ExPASy TrEMBL
Match:
A0A6J1K483 (transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE=4 SV=1)
HSP 1 Score: 172.2 bits (435), Expect = 2.2e-39
Identity = 99/200 (49.50%), Postives = 140/200 (70.00%), Query Frame = 0
Query: 1 MANNPIRCAPSSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEARTVV-DEVEDVTNY 60
MA+N I C S++TDQ++IE NRR EM+ LLS+ +SLVP+++S E T + D++E+ TNY
Sbjct: 1 MADNFIYCPSSAKTDQEIIERNRRDEMKALLSQLHSLVPNQNSTEGETTLPDQLENATNY 60
Query: 61 IKELQNHIEKLKEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLH 120
IK+L+ ++EKLKEK+EKLMG G +S E +++VQV+AH + SSL
Sbjct: 61 IKQLKENVEKLKEKREKLMGL--------GEKSTITSEN---KARVIVQVEAHLVGSSLE 120
Query: 121 ILLTTGSDYHSILQQILLLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAE--DGE 180
ILLTTGSDYH +L+QI+ LL +NGT+ + +NQ+ V +R FH I+A++ GEG E GE
Sbjct: 121 ILLTTGSDYHLVLRQIIQLLQENGTEIVDINQSTVANRAFHKIIAQMAGEGTTLEGAKGE 180
Query: 181 RICETVKNLVSEYRDGECTL 198
RICE VK VS Y+D + T+
Sbjct: 181 RICERVKKFVSHYKDDQYTV 189
BLAST of CcUC05G106230.1 vs. TAIR 10
Match:
AT4G20970.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )
HSP 1 Score: 82.8 bits (203), Expect = 3.4e-16
Identity = 55/179 (30.73%), Postives = 95/179 (53.07%), Query Frame = 0
Query: 11 SSQTDQKLIETNRRKEMRELLSKFNSLVPHESSKEARTVVDEVEDVTNYIKELQNHIEKL 70
S D+K +E NRR +M+ L S+ SL+PH SS E T+ D++++ NYIK+LQ ++EK
Sbjct: 11 SRSVDRKTVEKNRRMQMKSLYSELISLLPHHSSTEPLTLPDQLDEAANYIKKLQVNVEKK 70
Query: 71 KEKKEKLMGKYKMVELEDGRRSRKKHEETKPNPKLLVQVKAHQLDSSLHILLTTGSDYHS 130
+E+K L+ + +L S P+ L +++ + S HI L T ++
Sbjct: 71 RERKRNLVATTTLEKLNSVGSSSVSSSVDVSVPRKLPKIEIQETGSIFHIFLVTSLEHKF 130
Query: 131 ILQQIL-LLLHDNGTDTLHVNQTRVKHRVFHTIVAKVDGEGMGAEDGERICETVKNLVS 189
+ +I+ +L + G + H + V VFHT+ KV+ GA +I E ++ +V+
Sbjct: 131 MFCEIIRVLTEELGAEITHAGYSIVDDAVFHTLHCKVEEHDYGAR--SQIPERLEKIVN 187
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| XP_008442634.2 | 5.3e-56 | 61.62 | PREDICTED: transcription factor bHLH118-like [Cucumis melo] | [more] |
| XP_004146605.1 | 5.5e-53 | 60.91 | transcription factor bHLH162 isoform X1 [Cucumis sativus] >KGN64684.1 hypothetic... | [more] |
| XP_038876951.1 | 3.6e-52 | 59.80 | transcription factor bHLH162-like [Benincasa hispida] >XP_038876952.1 transcript... | [more] |
| XP_023542777.1 | 8.9e-43 | 55.38 | uncharacterized protein LOC111802586 [Cucurbita pepo subsp. pepo] | [more] |
| KAG6573268.1 | 2.0e-42 | 54.87 | Transcription factor basic helix-loop-helix 162, partial [Cucurbita argyrosperma... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| F4JIJ7 | 4.8e-15 | 30.73 | Transcription factor bHLH162 OS=Arabidopsis thaliana OX=3702 GN=BHLH162 PE=1 SV=... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| A0A1S3B660 | 2.6e-56 | 61.62 | transcription factor bHLH118-like OS=Cucumis melo OX=3656 GN=LOC103486444 PE=4 S... | [more] |
| A0A0A0LUL3 | 2.7e-53 | 60.91 | BHLH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_1G074400 PE=4 S... | [more] |
| A0A6J1K2Y3 | 2.8e-42 | 53.33 | transcription factor bHLH167-like OS=Cucurbita maxima OX=3661 GN=LOC111490185 PE... | [more] |
| A0A6J1GT92 | 1.2e-40 | 53.85 | uncharacterized protein LOC111457229 OS=Cucurbita moschata OX=3662 GN=LOC1114572... | [more] |
| A0A6J1K483 | 2.2e-39 | 49.50 | transcription factor bHLH162-like OS=Cucurbita maxima OX=3661 GN=LOC111489936 PE... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| AT4G20970.1 | 3.4e-16 | 30.73 | basic helix-loop-helix (bHLH) DNA-binding superfamily protein | [more] |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G106230.1-exon | CcUC05G106230.1-exon-CicolChr05:33494938..33495234 | exon |
| CcUC05G106230.1-exon | CcUC05G106230.1-exon-CicolChr05:33497078..33497440 | exon |
| CcUC05G106230.1-exon | CcUC05G106230.1-exon-CicolChr05:33497541..33497703 | exon |
The following three_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G106230.1-three_prime_utr | CcUC05G106230.1-three_prime_utr-CicolChr05:33494938..33495135 | three_prime_UTR |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G106230.1-cds | CcUC05G106230.1-cds-CicolChr05:33495136..33495234 | CDS |
| CcUC05G106230.1-cds | CcUC05G106230.1-cds-CicolChr05:33497078..33497440 | CDS |
| CcUC05G106230.1-cds | CcUC05G106230.1-cds-CicolChr05:33497541..33497672 | CDS |
The following five_prime_UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G106230.1-five_prime_utr | CcUC05G106230.1-five_prime_utr-CicolChr05:33497673..33497703 | five_prime_UTR |
The following polypeptide feature(s) derives from this mRNA:
| Feature Name | Unique Name | Type |
|---|
| CcUC05G106230.1 | CcUC05G106230.1-protein | polypeptide |
